Wall clock time and date at job start Tue Mar 31 2020 20:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47085 * 2 1 4 4 N 1.46495 * 109.47136 * 119.99472 * 2 1 3 5 5 C 1.36936 * 120.00288 * 275.00306 * 4 2 1 6 6 H 1.08000 * 119.99892 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00313 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00010 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00208 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46747 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46883 * 120.00029 * 9 7 5 12 12 H 1.48493 * 109.47094 * 240.00446 * 9 7 5 13 13 C 1.52998 * 109.47119 * 239.99621 * 2 1 3 14 14 H 1.09002 * 109.69910 * 58.38692 * 13 2 1 15 15 C 1.53189 * 109.58717 * 298.02938 * 13 2 1 16 16 C 1.53041 * 109.31173 * 185.57840 * 15 13 2 17 17 C 1.53044 * 109.53843 * 61.36554 * 16 15 13 18 18 C 1.53622 * 109.24118 * 298.51422 * 17 16 15 19 19 N 1.46925 * 108.54736 * 54.85414 * 18 17 16 20 20 C 1.34771 * 120.63172 * 126.36972 * 19 18 17 21 21 O 1.21280 * 119.99970 * 174.04872 * 20 19 18 22 22 C 1.50703 * 119.99941 * 354.04908 * 20 19 18 23 23 N 1.46502 * 109.46988 * 180.02562 * 22 20 19 24 24 C 1.45736 * 117.93184 * 270.24614 * 23 22 20 25 25 C 1.52920 * 110.54982 * 161.16231 * 24 23 22 26 26 C 1.53338 * 108.67596 * 50.54004 * 25 24 23 27 27 C 1.53075 * 108.42351 * 292.46418 * 26 25 24 28 28 C 1.33353 * 117.94473 * 89.99657 * 23 22 20 29 29 O 1.21275 * 118.25156 * 2.20116 * 28 23 22 30 30 H 1.09001 * 109.46912 * 185.96618 * 1 2 3 31 31 H 1.08999 * 109.47394 * 305.97174 * 1 2 3 32 32 H 1.09006 * 109.46964 * 65.96890 * 1 2 3 33 33 H 0.97004 * 119.99902 * 94.99385 * 4 2 1 34 34 H 0.97002 * 120.00339 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.49672 * 305.52970 * 15 13 2 36 36 H 1.09000 * 109.49900 * 65.62483 * 15 13 2 37 37 H 1.08998 * 109.45957 * 181.38143 * 16 15 13 38 38 H 1.08995 * 109.46099 * 301.34694 * 16 15 13 39 39 H 1.09002 * 109.49471 * 58.58461 * 17 16 15 40 40 H 1.08997 * 109.49616 * 178.67852 * 17 16 15 41 41 H 1.08999 * 109.73430 * 295.11376 * 18 17 16 42 42 H 1.08996 * 109.66593 * 174.55166 * 18 17 16 43 43 H 1.08995 * 109.47091 * 59.99466 * 22 20 19 44 44 H 1.09004 * 109.46956 * 299.99465 * 22 20 19 45 45 H 1.09002 * 109.44438 * 40.72103 * 24 23 22 46 46 H 1.08996 * 108.92633 * 281.27705 * 24 23 22 47 47 H 1.09003 * 109.60456 * 290.77518 * 25 24 23 48 48 H 1.09006 * 109.73653 * 170.37659 * 25 24 23 49 49 H 1.08998 * 109.67725 * 172.73783 * 26 25 24 50 50 H 1.08998 * 109.70707 * 52.21543 * 26 25 24 51 51 H 1.09002 * 109.40154 * 288.77319 * 27 26 25 52 52 H 1.08994 * 109.40204 * 169.02750 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3757 6 1 1.8918 1.0405 2.4243 7 6 2.6113 -0.6617 3.5093 8 7 2.9244 -1.9388 3.4503 9 14 2.7903 0.2705 5.1183 10 1 2.3763 1.6828 4.9207 11 1 1.9291 -0.3573 6.1524 12 1 4.2072 0.2267 5.5606 13 6 2.0400 -0.7213 -1.2492 14 1 1.6553 -0.2274 -2.1415 15 6 1.5718 -2.1797 -1.2272 16 6 2.1988 -2.9304 -2.4042 17 6 3.7233 -2.9105 -2.2703 18 6 4.2158 -1.4558 -2.3074 19 7 3.5090 -0.6964 -1.2670 20 6 4.1949 0.0139 -0.3498 21 8 3.6020 0.7220 0.4363 22 6 5.6987 -0.0717 -0.3009 23 7 6.2020 0.7860 0.7749 24 6 6.5141 2.1727 0.4529 25 6 6.5688 3.0198 1.7249 26 6 7.4820 2.3226 2.7403 27 6 6.8054 1.0246 3.1881 28 6 6.3407 0.2503 1.9881 29 8 6.0828 -0.9263 2.1290 30 1 -0.3633 -1.0221 0.1068 31 1 -0.3634 0.6036 0.8317 32 1 -0.3633 0.4185 -0.9386 33 1 2.2490 -1.6317 1.1527 34 1 3.2470 -2.3962 4.2426 35 1 1.8803 -2.6468 -0.2919 36 1 0.4855 -2.2144 -1.3107 37 1 1.8479 -3.9624 -2.4052 38 1 1.9100 -2.4480 -3.3379 39 1 4.0115 -3.3707 -1.3252 40 1 4.1683 -3.4653 -3.0962 41 1 4.0049 -1.0207 -3.2843 42 1 5.2884 -1.4267 -2.1160 43 1 6.1126 0.2589 -1.2535 44 1 5.9980 -1.1028 -0.1130 45 1 5.7490 2.5717 -0.2131 46 1 7.4820 2.2103 -0.0469 47 1 5.5665 3.1188 2.1417 48 1 6.9672 4.0075 1.4925 49 1 7.6361 2.9722 3.6019 50 1 8.4416 2.0950 2.2761 51 1 5.9492 1.2618 3.8197 52 1 7.5158 0.4227 3.7546 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266000813.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:04 Heat of formation + Delta-G solvation = -16.487781 kcal Electronic energy + Delta-G solvation = -33484.853568 eV Core-core repulsion = 29486.206486 eV Total energy + Delta-G solvation = -3998.647082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.39157 -39.43875 -36.67237 -35.91624 -35.15668 -33.48033 -32.32107 -31.99645 -29.52608 -29.33611 -27.89644 -27.62894 -24.63878 -23.98455 -23.78445 -22.91127 -22.00251 -20.61999 -19.86520 -18.41381 -18.12168 -16.81741 -16.42035 -16.24001 -15.99788 -15.32480 -14.88108 -14.49851 -14.37963 -14.05481 -13.95391 -13.85877 -13.70856 -13.45906 -13.29202 -13.03882 -12.87313 -12.59418 -12.51148 -12.23432 -12.01177 -11.85353 -11.44883 -11.30411 -11.19370 -11.03608 -11.02050 -10.83163 -10.76872 -10.72928 -10.54475 -10.51953 -10.39838 -10.27861 -9.98337 -9.64510 -9.21784 -9.02259 -8.63118 -8.50897 -7.82820 -7.75175 -6.41384 -5.32826 -2.53673 3.13433 3.48901 3.55886 3.60832 3.65664 3.68824 3.78551 4.87842 4.89631 4.92121 4.93580 4.96156 5.05154 5.08969 5.13590 5.28161 5.40745 5.45874 5.54103 5.58604 5.63018 5.66574 5.69141 5.78811 5.86710 5.88435 5.91517 5.94198 6.02250 6.02348 6.09568 6.12725 6.18401 6.20349 6.26230 6.35404 6.40587 6.41493 6.52874 6.61699 6.69622 6.77703 6.99552 7.11800 7.20904 7.51904 7.97118 8.12845 8.16479 8.83752 8.87257 9.19468 9.95964 10.53547 10.89710 11.91192 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.006567 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.336706 B = 4262.636819 C = 5792.063982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.170 3.830 3 H 0.080 0.920 4 N -0.702 5.702 5 C -0.182 4.182 6 H 0.059 0.941 7 C -0.016 4.016 8 N -0.928 5.928 9 Si 0.884 3.116 10 H -0.286 1.286 11 H -0.300 1.300 12 H -0.296 1.296 13 C 0.149 3.851 14 H 0.057 0.943 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.114 3.886 19 N -0.615 5.615 20 C 0.488 3.512 21 O -0.448 6.448 22 C 0.096 3.904 23 N -0.590 5.590 24 C 0.125 3.875 25 C -0.136 4.136 26 C -0.119 4.119 27 C -0.132 4.132 28 C 0.521 3.479 29 O -0.514 6.514 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.029 0.971 33 H 0.377 0.623 34 H 0.245 0.755 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.066 0.934 51 H 0.098 0.902 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.149 5.780 -14.319 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.060 3.940 3 H 0.098 0.902 4 N -0.344 5.344 5 C -0.314 4.314 6 H 0.077 0.923 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.718 3.282 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.224 1.224 13 C 0.045 3.955 14 H 0.075 0.925 15 C -0.171 4.171 16 C -0.153 4.153 17 C -0.174 4.174 18 C -0.010 4.010 19 N -0.354 5.354 20 C 0.272 3.728 21 O -0.316 6.316 22 C -0.031 4.031 23 N -0.324 5.324 24 C 0.002 3.998 25 C -0.173 4.173 26 C -0.157 4.157 27 C -0.172 4.172 28 C 0.309 3.691 29 O -0.388 6.388 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.212 0.788 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.117 0.883 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.741 5.725 -13.574 16.642 hybrid contribution 0.102 0.018 0.923 0.929 sum 7.843 5.743 -12.651 15.954 Atomic orbital electron populations 1.22609 1.00564 1.00754 0.99036 1.20648 0.90013 0.97860 0.85475 0.90197 1.42337 1.77405 1.09595 1.05072 1.18928 1.33308 0.92822 0.86367 0.92336 1.24469 1.03733 0.95824 0.97021 1.69593 1.52368 1.08313 1.27617 0.86418 0.77053 0.78768 0.85986 1.21228 1.22788 1.22447 1.21525 0.79078 0.95722 0.99218 0.92484 1.21979 1.00019 0.95881 0.99182 1.21486 0.95138 1.00203 0.98469 1.21992 0.96520 0.96463 1.02472 1.21639 0.96501 0.91678 0.91165 1.47898 1.06088 1.50453 1.30929 1.20766 0.89459 0.81907 0.80667 1.90867 1.67696 1.37080 1.36001 1.21267 0.92984 0.98181 0.90667 1.46785 1.65602 1.10811 1.09197 1.21231 0.99779 0.81237 0.97595 1.21843 1.01640 0.98368 0.95472 1.21630 0.98489 0.96304 0.99291 1.21618 1.02522 0.96512 0.96571 1.19873 0.77495 0.88195 0.83518 1.90827 1.48227 1.16497 1.83275 0.93673 0.93128 0.95160 0.78753 0.94452 0.90338 0.91343 0.92295 0.92565 0.91031 0.91662 0.92282 0.90657 0.89550 0.87606 0.91156 0.92596 0.90302 0.90398 0.91089 0.91573 0.88328 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 9.02 37.16 0.34 -2.92 16 2 C 0.17 3.60 1.89 -67.93 -0.13 3.47 16 3 H 0.08 1.87 5.94 -52.03 -0.31 1.56 16 4 N -0.70 -18.21 3.43 -53.43 -0.18 -18.39 16 5 C -0.18 -5.35 8.06 -15.06 -0.12 -5.47 16 6 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 8 N -0.93 -30.05 13.06 55.49 0.72 -29.33 16 9 Si 0.88 24.33 29.55 -169.99 -5.02 19.30 16 10 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 11 H -0.30 -8.34 7.11 56.52 0.40 -7.94 16 12 H -0.30 -8.16 7.11 56.52 0.40 -7.76 16 13 C 0.15 2.55 2.75 -67.60 -0.19 2.36 16 14 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.13 -2.15 4.80 -26.61 -0.13 -2.27 16 16 C -0.12 -1.47 5.88 -26.69 -0.16 -1.63 16 17 C -0.14 -1.68 6.10 -26.39 -0.16 -1.85 16 18 C 0.11 1.40 6.38 -3.49 -0.02 1.38 16 19 N -0.62 -10.18 2.96 -164.96 -0.49 -10.66 16 20 C 0.49 9.35 7.16 -10.99 -0.08 9.27 16 21 O -0.45 -10.36 9.52 5.56 0.05 -10.30 16 22 C 0.10 1.56 4.06 -5.19 -0.02 1.54 16 23 N -0.59 -9.97 2.30 -176.35 -0.41 -10.38 16 24 C 0.12 1.58 6.32 -4.49 -0.03 1.55 16 25 C -0.14 -1.64 6.02 -26.60 -0.16 -1.80 16 26 C -0.12 -1.46 6.03 -26.52 -0.16 -1.62 16 27 C -0.13 -2.27 6.03 -28.09 -0.17 -2.44 16 28 C 0.52 10.66 7.44 -11.87 -0.09 10.57 16 29 O -0.51 -13.18 16.18 5.56 0.09 -13.09 16 30 H 0.04 0.87 6.94 -51.93 -0.36 0.51 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.38 10.65 5.88 -40.82 -0.24 10.41 16 34 H 0.25 7.93 8.31 -40.82 -0.34 7.59 16 35 H 0.08 1.59 6.25 -51.93 -0.32 1.26 16 36 H 0.07 1.06 6.94 -51.93 -0.36 0.70 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.82 5.93 -51.93 -0.31 0.51 16 43 H 0.09 1.02 7.57 -51.93 -0.39 0.63 16 44 H 0.11 1.90 6.92 -51.93 -0.36 1.54 16 45 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 51 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 52 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -37.09 390.47 -9.68 -46.77 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -8.96 Total: 10.63 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.37 Total: 9.56 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -0.35 Total: -68.76 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.14 Total: -23.39 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.02 Total: 19.30 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.09 -9.68 -46.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266000813.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.283 kcal (2) G-P(sol) polarization free energy of solvation -37.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds