Wall clock time and date at job start Tue Mar 31 2020 20:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47543 * 2 1 4 4 N 1.46499 * 109.47424 * 239.99631 * 2 1 3 5 5 C 1.36935 * 119.99779 * 84.99766 * 4 2 1 6 6 H 1.07999 * 120.00280 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99703 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99789 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00229 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47051 * 89.99853 * 9 7 5 11 11 H 1.48499 * 109.47041 * 209.99865 * 9 7 5 12 12 H 1.48497 * 109.46907 * 329.99742 * 9 7 5 13 13 C 1.53012 * 109.46869 * 119.99838 * 2 1 3 14 14 H 1.08992 * 109.69972 * 306.42676 * 13 2 1 15 15 C 1.53620 * 109.66201 * 67.02197 * 13 2 1 16 16 C 1.53050 * 109.23800 * 174.54694 * 15 13 2 17 17 C 1.53043 * 109.53714 * 298.50920 * 16 15 13 18 18 C 1.53196 * 109.30841 * 61.36650 * 17 16 15 19 19 N 1.46921 * 108.77879 * 305.36067 * 18 17 16 20 20 C 1.34773 * 120.63017 * 233.59168 * 19 18 17 21 21 O 1.21285 * 119.99868 * 175.06221 * 20 19 18 22 22 C 1.50696 * 120.00168 * 355.05874 * 20 19 18 23 23 N 1.46497 * 109.47177 * 180.02562 * 22 20 19 24 24 C 1.46121 * 117.87586 * 270.04096 * 23 22 20 25 25 C 1.52923 * 110.28922 * 160.98659 * 24 23 22 26 26 C 1.53345 * 108.80774 * 50.69514 * 25 24 23 27 27 C 1.53070 * 108.42671 * 292.38649 * 26 25 24 28 28 C 1.33360 * 117.94894 * 90.00028 * 23 22 20 29 29 O 1.21276 * 118.24458 * 2.19871 * 28 23 22 30 30 H 1.09006 * 109.47359 * 304.94001 * 1 2 3 31 31 H 1.08999 * 109.47056 * 64.94073 * 1 2 3 32 32 H 1.09002 * 109.47298 * 184.94469 * 1 2 3 33 33 H 0.97001 * 120.00009 * 265.00574 * 4 2 1 34 34 H 0.96997 * 120.00202 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.63428 * 54.55856 * 15 13 2 36 36 H 1.09000 * 109.43573 * 294.41410 * 15 13 2 37 37 H 1.09003 * 109.45478 * 178.48842 * 16 15 13 38 38 H 1.09000 * 109.45608 * 58.53617 * 16 15 13 39 39 H 1.08993 * 109.49734 * 301.41732 * 17 16 15 40 40 H 1.08996 * 109.52052 * 181.33093 * 17 16 15 41 41 H 1.09005 * 109.58042 * 185.57135 * 18 17 16 42 42 H 1.09004 * 109.58520 * 65.15385 * 18 17 16 43 43 H 1.08997 * 109.47363 * 60.00310 * 22 20 19 44 44 H 1.09001 * 109.47137 * 299.99977 * 22 20 19 45 45 H 1.08998 * 109.51079 * 40.66652 * 24 23 22 46 46 H 1.09003 * 109.28843 * 281.16591 * 24 23 22 47 47 H 1.09000 * 109.60238 * 290.86193 * 25 24 23 48 48 H 1.08999 * 109.60539 * 170.53396 * 25 24 23 49 49 H 1.09004 * 109.67508 * 52.12576 * 26 25 24 50 50 H 1.09007 * 109.67468 * 172.65284 * 26 25 24 51 51 H 1.09007 * 109.39875 * 169.02757 * 27 26 25 52 52 H 1.08995 * 109.40260 * 288.76810 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6114 -0.6622 -3.5091 8 7 2.7375 -0.0055 -4.6428 9 14 3.0544 -2.4749 -3.4255 10 1 1.8566 -3.2925 -3.7450 11 1 4.1296 -2.7675 -4.4071 12 1 3.5292 -2.8058 -2.0579 13 6 2.0399 -0.7213 1.2494 14 1 1.5879 -0.2810 2.1380 15 6 1.6798 -2.2125 1.1685 16 6 2.3103 -2.9485 2.3531 17 6 3.8336 -2.8169 2.2852 18 6 4.2186 -1.3368 2.3751 19 7 3.5019 -0.5972 1.3274 20 6 4.1721 0.1846 0.4579 21 8 3.5815 0.7189 -0.4569 22 6 5.6552 0.3950 0.6223 23 7 6.1440 1.2775 -0.4400 24 6 6.5998 0.6615 -1.6841 25 6 6.6206 1.6951 -2.8110 26 6 7.3872 2.9337 -2.3318 27 6 6.5714 3.6103 -1.2274 28 6 6.1439 2.5912 -0.2106 29 8 5.7785 2.9839 0.8771 30 1 -0.3634 0.5886 0.8425 31 1 -0.3633 0.4353 -0.9309 32 1 -0.3634 -1.0238 0.0886 33 1 2.2490 -1.6318 -1.1525 34 1 3.0602 -0.4629 -5.4349 35 1 2.0593 -2.6309 0.2364 36 1 0.5963 -2.3264 1.2045 37 1 2.0348 -4.0024 2.3140 38 1 1.9492 -2.5133 3.2849 39 1 4.1928 -3.2296 1.3426 40 1 4.2835 -3.3609 3.1156 41 1 5.2934 -1.2294 2.2282 42 1 3.9406 -0.9458 3.3539 43 1 6.1674 -0.5652 0.5617 44 1 5.8521 0.8513 1.5925 45 1 5.9278 -0.1529 -1.9546 46 1 7.6045 0.2635 -1.5418 47 1 5.5993 1.9746 -3.0697 48 1 7.1168 1.2733 -3.6850 49 1 8.3591 2.6346 -1.9393 50 1 7.5238 3.6252 -3.1633 51 1 7.1813 4.3723 -0.7419 52 1 5.6892 4.0785 -1.6640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266000814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:07 Heat of formation + Delta-G solvation = -14.946932 kcal Electronic energy + Delta-G solvation = -33230.328921 eV Core-core repulsion = 29231.748655 eV Total energy + Delta-G solvation = -3998.580266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.60907 -39.67668 -36.88157 -36.09532 -35.45121 -33.63067 -32.50827 -32.12571 -29.99523 -29.41057 -28.45056 -27.80165 -24.78922 -24.12055 -23.87301 -22.84960 -22.02012 -20.86430 -19.95030 -18.62652 -18.23313 -17.37532 -16.56978 -16.41901 -16.21852 -15.44481 -15.02230 -14.92957 -14.56038 -14.41058 -13.96216 -13.82023 -13.77265 -13.63224 -13.43560 -13.16375 -12.96933 -12.84196 -12.69107 -12.36272 -12.23964 -12.08301 -11.64437 -11.47849 -11.39745 -11.35665 -11.04307 -10.92205 -10.78930 -10.75639 -10.72297 -10.67941 -10.59191 -10.46028 -10.14087 -9.85404 -9.39623 -9.29764 -8.79070 -8.71783 -8.09623 -7.85202 -6.87671 -5.49751 -2.77484 2.84276 3.19704 3.36553 3.41644 3.45896 3.51368 3.57243 4.75800 4.77202 4.77746 4.85855 4.93900 4.97901 4.98451 5.05216 5.10066 5.26391 5.32431 5.42520 5.47504 5.52177 5.57680 5.61710 5.63572 5.65829 5.74951 5.79847 5.81515 5.87092 5.88000 6.00561 6.02864 6.05114 6.13237 6.14015 6.17827 6.22543 6.35606 6.43403 6.48347 6.55951 6.65138 6.70913 6.92382 7.04844 7.36405 7.72607 7.96571 8.30243 8.44273 8.67400 9.00429 9.48762 10.20911 10.43409 11.70851 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.006487 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.750235 B = 4315.305256 C = 5807.278689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.177 3.823 3 H 0.088 0.912 4 N -0.729 5.729 5 C -0.169 4.169 6 H 0.085 0.915 7 C -0.012 4.012 8 N -0.948 5.948 9 Si 0.870 3.130 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.286 1.286 13 C 0.145 3.855 14 H 0.065 0.935 15 C -0.134 4.134 16 C -0.117 4.117 17 C -0.136 4.136 18 C 0.113 3.887 19 N -0.616 5.616 20 C 0.471 3.529 21 O -0.433 6.433 22 C 0.090 3.910 23 N -0.577 5.577 24 C 0.120 3.880 25 C -0.135 4.135 26 C -0.120 4.120 27 C -0.131 4.131 28 C 0.527 3.473 29 O -0.565 6.565 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.353 0.647 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.093 0.907 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.598 -2.063 13.304 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.068 3.932 3 H 0.106 0.894 4 N -0.372 5.372 5 C -0.300 4.300 6 H 0.103 0.897 7 C -0.204 4.204 8 N -0.600 5.600 9 Si 0.703 3.297 10 H -0.220 1.220 11 H -0.224 1.224 12 H -0.213 1.213 13 C 0.041 3.959 14 H 0.083 0.917 15 C -0.173 4.173 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.011 4.011 19 N -0.355 5.355 20 C 0.255 3.745 21 O -0.301 6.301 22 C -0.037 4.037 23 N -0.308 5.308 24 C -0.002 4.002 25 C -0.173 4.173 26 C -0.158 4.158 27 C -0.170 4.170 28 C 0.317 3.683 29 O -0.445 6.445 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.187 0.813 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.109 0.891 48 H 0.099 0.901 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.112 0.888 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.136 -1.335 13.115 15.491 hybrid contribution 0.353 -1.826 -0.081 1.861 sum 8.490 -3.161 13.034 15.873 Atomic orbital electron populations 1.22564 0.99736 1.00100 1.00721 1.20628 0.90204 0.98021 0.84330 0.89443 1.42802 1.78922 1.08381 1.07073 1.18944 1.31776 0.94906 0.84379 0.89679 1.24472 1.03777 0.96069 0.96054 1.69673 1.55754 1.34501 1.00047 0.86757 0.77953 0.88963 0.76063 1.21955 1.22421 1.21307 1.21676 0.79405 0.95244 0.99556 0.91693 1.22087 1.00750 0.95781 0.98640 1.21500 0.95044 1.00206 0.98691 1.21922 0.96874 0.96345 1.02269 1.21582 0.96594 0.91541 0.91407 1.47933 1.06841 1.48000 1.32698 1.20943 0.89582 0.81253 0.82683 1.91061 1.66466 1.45022 1.27502 1.21365 0.93455 0.95230 0.93620 1.46920 1.62251 1.05710 1.15932 1.21450 0.98753 0.96998 0.83021 1.21837 1.03228 0.94979 0.97245 1.21648 0.98347 0.97746 0.98043 1.21608 1.02350 0.97173 0.95908 1.20046 0.76952 0.82791 0.88549 1.90660 1.49327 1.79026 1.25467 0.94580 0.92121 0.93995 0.81283 0.93908 0.91243 0.90898 0.92189 0.92074 0.91601 0.91278 0.90528 0.91920 0.88981 0.87620 0.89898 0.92458 0.89097 0.90145 0.91761 0.90768 0.88840 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.38 37.15 0.35 -2.79 16 2 C 0.18 3.59 1.88 -67.93 -0.13 3.46 16 3 H 0.09 2.05 5.90 -52.20 -0.31 1.74 16 4 N -0.73 -17.24 3.43 -53.43 -0.18 -17.42 16 5 C -0.17 -4.78 8.47 -15.06 -0.13 -4.91 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.95 -29.78 13.97 55.49 0.78 -29.01 16 9 Si 0.87 22.47 27.74 -169.99 -4.71 17.76 16 10 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 11 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.29 -7.01 6.52 56.52 0.37 -6.64 16 13 C 0.15 2.35 2.73 -67.37 -0.18 2.17 16 14 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.13 -1.96 4.89 -26.38 -0.13 -2.09 16 16 C -0.12 -1.32 5.88 -26.68 -0.16 -1.48 16 17 C -0.14 -1.46 6.08 -26.61 -0.16 -1.62 16 18 C 0.11 1.29 6.32 -3.71 -0.02 1.26 16 19 N -0.62 -9.70 2.96 -164.96 -0.49 -10.19 16 20 C 0.47 8.70 7.44 -10.99 -0.08 8.62 16 21 O -0.43 -9.89 9.16 5.55 0.05 -9.84 16 22 C 0.09 1.39 4.10 -5.20 -0.02 1.36 16 23 N -0.58 -9.40 2.31 -176.05 -0.41 -9.81 16 24 C 0.12 1.82 6.35 -4.29 -0.03 1.79 16 25 C -0.14 -1.99 6.01 -26.59 -0.16 -2.15 16 26 C -0.12 -1.42 6.03 -26.52 -0.16 -1.58 16 27 C -0.13 -1.80 6.03 -28.10 -0.17 -1.97 16 28 C 0.53 9.10 7.44 -11.87 -0.09 9.01 16 29 O -0.57 -11.40 16.18 5.56 0.09 -11.31 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.04 0.72 6.57 -51.93 -0.34 0.37 16 33 H 0.35 8.38 3.46 -40.82 -0.14 8.24 16 34 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 1.22 6.05 -51.93 -0.31 0.91 16 36 H 0.07 1.01 6.82 -51.93 -0.35 0.66 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.75 5.96 -51.93 -0.31 0.44 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.16 7.36 -51.93 -0.38 0.77 16 44 H 0.11 1.56 7.10 -51.93 -0.37 1.19 16 45 H 0.08 1.51 8.11 -51.93 -0.42 1.08 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.70 8.12 -51.93 -0.42 1.28 16 48 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 50 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 51 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 52 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -35.16 386.83 -9.29 -44.45 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.87 Total: 10.88 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -1.37 Total: 8.65 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.30 Total: -66.43 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.14 Total: -21.14 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.16 -9.29 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266000814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.500 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds