Wall clock time and date at job start Tue Mar 31 2020 20:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47543 * 2 1 4 4 N 1.46499 * 109.47424 * 239.99631 * 2 1 3 5 5 C 1.36935 * 119.99779 * 84.99766 * 4 2 1 6 6 H 1.07999 * 120.00280 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99703 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99789 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00229 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47051 * 89.99853 * 9 7 5 11 11 H 1.48499 * 109.47041 * 209.99865 * 9 7 5 12 12 H 1.48497 * 109.46907 * 329.99742 * 9 7 5 13 13 C 1.53012 * 109.46869 * 119.99838 * 2 1 3 14 14 H 1.08992 * 109.69972 * 306.42676 * 13 2 1 15 15 C 1.53620 * 109.66201 * 67.02197 * 13 2 1 16 16 C 1.53050 * 109.23800 * 174.54694 * 15 13 2 17 17 C 1.53043 * 109.53714 * 298.50920 * 16 15 13 18 18 C 1.53196 * 109.30841 * 61.36650 * 17 16 15 19 19 N 1.46921 * 108.77879 * 305.36067 * 18 17 16 20 20 C 1.34773 * 120.63017 * 233.59168 * 19 18 17 21 21 O 1.21285 * 119.99868 * 175.06221 * 20 19 18 22 22 C 1.50696 * 120.00168 * 355.05874 * 20 19 18 23 23 N 1.46497 * 109.47177 * 180.02562 * 22 20 19 24 24 C 1.46121 * 117.87586 * 270.04096 * 23 22 20 25 25 C 1.52923 * 110.28922 * 160.98659 * 24 23 22 26 26 C 1.53345 * 108.80774 * 50.69514 * 25 24 23 27 27 C 1.53070 * 108.42671 * 292.38649 * 26 25 24 28 28 C 1.33360 * 117.94894 * 90.00028 * 23 22 20 29 29 O 1.21276 * 118.24458 * 2.19871 * 28 23 22 30 30 H 1.09006 * 109.47359 * 304.94001 * 1 2 3 31 31 H 1.08999 * 109.47056 * 64.94073 * 1 2 3 32 32 H 1.09002 * 109.47298 * 184.94469 * 1 2 3 33 33 H 0.97001 * 120.00009 * 265.00574 * 4 2 1 34 34 H 0.96997 * 120.00202 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.63428 * 54.55856 * 15 13 2 36 36 H 1.09000 * 109.43573 * 294.41410 * 15 13 2 37 37 H 1.09003 * 109.45478 * 178.48842 * 16 15 13 38 38 H 1.09000 * 109.45608 * 58.53617 * 16 15 13 39 39 H 1.08993 * 109.49734 * 301.41732 * 17 16 15 40 40 H 1.08996 * 109.52052 * 181.33093 * 17 16 15 41 41 H 1.09005 * 109.58042 * 185.57135 * 18 17 16 42 42 H 1.09004 * 109.58520 * 65.15385 * 18 17 16 43 43 H 1.08997 * 109.47363 * 60.00310 * 22 20 19 44 44 H 1.09001 * 109.47137 * 299.99977 * 22 20 19 45 45 H 1.08998 * 109.51079 * 40.66652 * 24 23 22 46 46 H 1.09003 * 109.28843 * 281.16591 * 24 23 22 47 47 H 1.09000 * 109.60238 * 290.86193 * 25 24 23 48 48 H 1.08999 * 109.60539 * 170.53396 * 25 24 23 49 49 H 1.09004 * 109.67508 * 52.12576 * 26 25 24 50 50 H 1.09007 * 109.67468 * 172.65284 * 26 25 24 51 51 H 1.09007 * 109.39875 * 169.02757 * 27 26 25 52 52 H 1.08995 * 109.40260 * 288.76810 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6114 -0.6622 -3.5091 8 7 2.7375 -0.0055 -4.6428 9 14 3.0544 -2.4749 -3.4255 10 1 1.8566 -3.2925 -3.7450 11 1 4.1296 -2.7675 -4.4071 12 1 3.5292 -2.8058 -2.0579 13 6 2.0399 -0.7213 1.2494 14 1 1.5879 -0.2810 2.1380 15 6 1.6798 -2.2125 1.1685 16 6 2.3103 -2.9485 2.3531 17 6 3.8336 -2.8169 2.2852 18 6 4.2186 -1.3368 2.3751 19 7 3.5019 -0.5972 1.3274 20 6 4.1721 0.1846 0.4579 21 8 3.5815 0.7189 -0.4569 22 6 5.6552 0.3950 0.6223 23 7 6.1440 1.2775 -0.4400 24 6 6.5998 0.6615 -1.6841 25 6 6.6206 1.6951 -2.8110 26 6 7.3872 2.9337 -2.3318 27 6 6.5714 3.6103 -1.2274 28 6 6.1439 2.5912 -0.2106 29 8 5.7785 2.9839 0.8771 30 1 -0.3634 0.5886 0.8425 31 1 -0.3633 0.4353 -0.9309 32 1 -0.3634 -1.0238 0.0886 33 1 2.2490 -1.6318 -1.1525 34 1 3.0602 -0.4629 -5.4349 35 1 2.0593 -2.6309 0.2364 36 1 0.5963 -2.3264 1.2045 37 1 2.0348 -4.0024 2.3140 38 1 1.9492 -2.5133 3.2849 39 1 4.1928 -3.2296 1.3426 40 1 4.2835 -3.3609 3.1156 41 1 5.2934 -1.2294 2.2282 42 1 3.9406 -0.9458 3.3539 43 1 6.1674 -0.5652 0.5617 44 1 5.8521 0.8513 1.5925 45 1 5.9278 -0.1529 -1.9546 46 1 7.6045 0.2635 -1.5418 47 1 5.5993 1.9746 -3.0697 48 1 7.1168 1.2733 -3.6850 49 1 8.3591 2.6346 -1.9393 50 1 7.5238 3.6252 -3.1633 51 1 7.1813 4.3723 -0.7419 52 1 5.6892 4.0785 -1.6640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266000814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:06 Heat of formation + Delta-G solvation = -38.512926 kcal Electronic energy + Delta-G solvation = -33231.350819 eV Core-core repulsion = 29231.748655 eV Total energy + Delta-G solvation = -3999.602164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.93087 -40.98755 -38.20923 -37.40403 -37.04977 -34.91733 -34.08341 -33.65756 -31.72930 -30.64459 -29.98839 -29.04023 -26.05198 -25.48069 -25.26912 -24.46629 -23.26207 -22.00731 -21.44627 -19.99427 -19.53892 -19.33564 -17.91106 -17.67441 -17.50729 -16.86500 -16.44498 -16.26787 -16.09276 -15.81481 -15.31266 -15.15764 -15.04663 -14.97441 -14.72318 -14.44586 -14.31890 -14.28386 -14.01923 -13.89791 -13.69356 -13.37273 -13.24954 -12.95294 -12.85594 -12.66355 -12.64902 -12.43071 -12.24117 -12.02197 -11.92671 -11.85203 -11.82126 -11.76083 -11.60965 -11.44569 -11.28394 -10.84025 -10.72511 -10.17418 -9.49689 -9.30498 -8.86589 -7.80002 -5.04389 1.29670 1.34775 1.41042 1.50973 1.96793 2.01066 2.34702 2.57165 3.49725 3.58973 3.60781 3.77794 3.83519 3.87030 3.90947 3.93314 3.98498 4.06054 4.18144 4.22173 4.32832 4.35652 4.37698 4.47137 4.56367 4.57946 4.61396 4.69772 4.78105 4.82676 4.83997 4.92111 4.92793 4.97724 4.99082 5.06204 5.11372 5.14546 5.21559 5.23313 5.31943 5.40499 5.41707 5.49579 5.51969 5.91414 6.00594 6.40182 6.43395 6.68306 7.11227 7.28972 7.64083 8.05324 8.28189 9.44494 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.006487 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.750235 B = 4315.305256 C = 5807.278689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.174 3.826 3 H 0.048 0.952 4 N -0.721 5.721 5 C -0.139 4.139 6 H 0.032 0.968 7 C -0.078 4.078 8 N -0.996 5.996 9 Si 0.942 3.058 10 H -0.292 1.292 11 H -0.300 1.300 12 H -0.265 1.265 13 C 0.148 3.852 14 H 0.088 0.912 15 C -0.130 4.130 16 C -0.112 4.112 17 C -0.131 4.131 18 C 0.104 3.896 19 N -0.616 5.616 20 C 0.460 3.540 21 O -0.495 6.495 22 C 0.092 3.908 23 N -0.579 5.579 24 C 0.121 3.879 25 C -0.134 4.134 26 C -0.106 4.106 27 C -0.130 4.130 28 C 0.516 3.484 29 O -0.601 6.601 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.059 0.941 33 H 0.356 0.644 34 H 0.246 0.754 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.045 0.955 46 H 0.103 0.897 47 H 0.034 0.966 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.118 0.882 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.545 -4.568 16.478 20.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.066 3.934 3 H 0.066 0.934 4 N -0.365 5.365 5 C -0.271 4.271 6 H 0.050 0.950 7 C -0.266 4.266 8 N -0.651 5.651 9 Si 0.773 3.227 10 H -0.220 1.220 11 H -0.227 1.227 12 H -0.191 1.191 13 C 0.044 3.956 14 H 0.106 0.894 15 C -0.168 4.168 16 C -0.149 4.149 17 C -0.170 4.170 18 C -0.017 4.017 19 N -0.353 5.353 20 C 0.246 3.754 21 O -0.367 6.367 22 C -0.035 4.035 23 N -0.309 5.309 24 C -0.001 4.001 25 C -0.172 4.172 26 C -0.143 4.143 27 C -0.170 4.170 28 C 0.307 3.693 29 O -0.484 6.484 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.191 0.809 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.143 0.857 44 H 0.133 0.867 45 H 0.064 0.936 46 H 0.121 0.879 47 H 0.053 0.947 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.136 0.864 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.080 -3.891 16.376 19.620 hybrid contribution -0.332 -0.946 -0.974 1.398 sum 9.748 -4.836 15.402 18.859 Atomic orbital electron populations 1.22411 0.98206 1.01394 1.00161 1.20633 0.91134 0.96466 0.85175 0.93381 1.42661 1.78856 1.08214 1.06722 1.18616 1.29645 0.92609 0.86223 0.94986 1.25103 1.05052 1.00816 0.95637 1.69881 1.57913 1.36488 1.00837 0.85572 0.77309 0.82985 0.76798 1.21955 1.22694 1.19110 1.21585 0.80116 0.96219 0.97697 0.89424 1.22043 1.01523 0.94331 0.98924 1.21498 0.95188 1.00597 0.97626 1.21921 0.96597 0.95706 1.02735 1.21959 0.97298 0.91682 0.90800 1.48086 1.06807 1.47472 1.32941 1.21599 0.90914 0.80635 0.82287 1.91062 1.67863 1.47553 1.30217 1.21497 0.91593 0.96675 0.93733 1.47070 1.61598 1.05825 1.16396 1.21521 0.99929 0.95907 0.82703 1.21788 1.00646 0.96714 0.98069 1.21606 0.98488 0.96306 0.97887 1.21660 1.02407 0.96993 0.95922 1.20670 0.76442 0.83524 0.88692 1.90623 1.51093 1.79616 1.27073 0.91680 0.95562 0.92231 0.80912 0.94457 0.94384 0.90069 0.90825 0.90004 0.93488 0.87789 0.88764 0.89668 0.85692 0.86744 0.93595 0.87941 0.94710 0.88552 0.88735 0.88858 0.86362 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.99 9.38 71.98 0.68 -5.32 16 2 C 0.17 7.24 1.88 44.99 0.08 7.32 16 3 H 0.05 2.42 5.90 -6.63 -0.04 2.38 16 4 N -0.72 -35.37 3.43 -322.94 -1.11 -36.48 16 5 C -0.14 -8.37 8.47 84.03 0.71 -7.66 16 6 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 7 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 8 N -1.00 -66.34 13.97 21.65 0.30 -66.04 16 9 Si 0.94 48.12 27.74 68.60 1.90 50.02 16 10 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 11 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 12 H -0.27 -12.44 6.52 99.48 0.65 -11.79 16 13 C 0.15 4.57 2.73 45.12 0.12 4.70 16 14 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.13 -3.46 4.89 30.82 0.15 -3.31 16 16 C -0.11 -2.03 5.88 30.63 0.18 -1.85 16 17 C -0.13 -2.23 6.08 30.67 0.19 -2.04 16 18 C 0.10 1.98 6.32 86.36 0.55 2.53 16 19 N -0.62 -18.41 2.96 -794.21 -2.35 -20.77 16 20 C 0.46 17.11 7.44 87.66 0.65 17.76 16 21 O -0.49 -23.96 9.16 -3.05 -0.03 -23.98 16 22 C 0.09 2.72 4.10 85.63 0.35 3.07 16 23 N -0.58 -18.85 2.31 -830.08 -1.92 -20.77 16 24 C 0.12 3.65 6.35 86.43 0.55 4.20 16 25 C -0.13 -4.04 6.01 30.68 0.18 -3.86 16 26 C -0.11 -2.35 6.03 30.73 0.19 -2.17 16 27 C -0.13 -3.60 6.03 29.71 0.18 -3.42 16 28 C 0.52 18.05 7.44 87.71 0.65 18.70 16 29 O -0.60 -24.68 16.18 -3.02 -0.05 -24.73 16 30 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.98 6.57 -2.39 -0.02 1.96 16 33 H 0.36 17.03 3.46 -92.71 -0.32 16.71 16 34 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 35 H 0.04 1.26 6.05 -2.38 -0.01 1.25 16 36 H 0.08 2.01 6.82 -2.39 -0.02 1.99 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.46 5.96 -2.38 -0.01 1.45 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.13 2.81 7.36 -2.39 -0.02 2.79 16 44 H 0.11 3.20 7.10 -2.39 -0.02 3.18 16 45 H 0.05 1.72 8.11 -2.39 -0.02 1.70 16 46 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.03 1.42 8.12 -2.39 -0.02 1.40 16 48 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 49 H 0.09 1.61 8.13 -2.38 -0.02 1.59 16 50 H 0.09 1.76 8.14 -2.38 -0.02 1.75 16 51 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 52 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -85.66 386.83 3.13 -82.54 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.50 Total: 35.87 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 5.88 Total: 24.34 kcal Atomic # 7 Polarization: -138.98 SS G_CDS: -5.08 Total: -144.06 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -0.08 Total: -48.71 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.90 Total: 50.02 kcal Total: -85.66 3.13 -82.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266000814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.023 kcal (2) G-P(sol) polarization free energy of solvation -85.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds