Wall clock time and date at job start Tue Mar 31 2020 20:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99980 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47261 * 180.02562 * 9 7 6 11 11 C 1.29440 * 117.95970 * 94.73408 * 10 9 7 12 12 C 1.50067 * 124.07125 * 180.23750 * 11 10 9 13 13 C 1.53026 * 110.20267 * 343.31962 * 12 11 10 14 14 C 1.53388 * 108.43567 * 49.25011 * 13 12 11 15 15 C 1.50071 * 117.96056 * 275.00243 * 10 9 7 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00252 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00305 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47102 * 89.99542 * 25 23 21 27 27 H 1.48493 * 109.47421 * 209.99846 * 25 23 21 28 28 H 1.48497 * 109.46772 * 330.00472 * 25 23 21 29 29 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 33 33 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 34 34 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 35 35 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 36 36 H 0.97001 * 119.99987 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47118 * 300.00011 * 9 7 6 38 38 H 1.09003 * 109.47094 * 60.00080 * 9 7 6 39 39 H 1.07988 * 117.96735 * 0.47308 * 11 10 9 40 40 H 1.09004 * 109.48160 * 223.00020 * 12 11 10 41 41 H 1.09003 * 109.18130 * 103.45059 * 12 11 10 42 42 H 1.08996 * 109.64088 * 289.56038 * 13 12 11 43 43 H 1.09003 * 109.63761 * 168.93440 * 13 12 11 44 44 H 1.09007 * 109.63975 * 172.87698 * 14 13 12 45 45 H 1.08998 * 109.64411 * 52.25243 * 14 13 12 46 46 H 1.08994 * 109.35559 * 283.05126 * 15 10 9 47 47 H 1.09000 * 109.35761 * 42.77835 * 15 10 9 48 48 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 49 49 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 50 50 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 51 51 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 52 52 H 0.97002 * 120.00635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0530 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7752 8 8 6.1583 -0.8006 2.0236 9 6 5.8762 -2.0494 4.0062 10 6 7.3781 -1.9432 4.0697 11 6 7.8896 -0.9830 4.7710 12 6 9.3636 -0.7466 4.9241 13 6 10.1451 -1.9936 4.5047 14 6 9.6242 -2.4557 3.1380 15 6 8.1876 -2.9537 3.3108 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.7708 -0.5438 -8.1004 25 14 2.8982 1.9177 -7.1782 26 1 4.0987 2.7366 -6.8726 27 1 2.4330 2.2163 -8.5564 28 1 1.8192 2.2409 -6.2105 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4368 1.3573 36 1 3.4257 -1.7353 3.1109 37 1 5.4420 -1.5889 4.8937 38 1 5.5873 -3.0996 3.9636 39 1 7.2136 -0.3125 5.2806 40 1 9.5880 -0.5126 5.9648 41 1 9.6588 0.0933 4.2952 42 1 9.9959 -2.7841 5.2402 43 1 11.2058 -1.7534 4.4305 44 1 10.2499 -3.2653 2.7620 45 1 9.6408 -1.6204 2.4380 46 1 8.1952 -3.8957 3.8588 47 1 7.7412 -3.1104 2.3288 48 1 2.9172 -1.1206 -1.0288 49 1 1.0870 0.6165 -2.5525 50 1 2.7588 1.0462 -2.1182 51 1 2.5033 1.0618 -4.8013 52 1 3.8716 -0.0817 -8.9473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266130203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:44 Heat of formation + Delta-G solvation = -78.517104 kcal Electronic energy + Delta-G solvation = -28561.374738 eV Core-core repulsion = 24560.037863 eV Total energy + Delta-G solvation = -4001.336875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.18804 -38.75669 -38.40185 -37.22705 -34.83369 -33.91945 -33.20555 -31.76189 -31.41702 -30.98001 -29.40421 -27.43671 -26.53062 -24.03357 -23.54334 -23.13253 -21.97307 -20.90598 -20.19068 -19.35020 -18.33113 -17.83148 -17.22541 -16.63242 -16.25407 -15.94897 -15.62302 -15.31931 -15.17711 -14.77368 -14.60498 -14.17459 -14.07186 -13.91139 -13.76476 -13.41115 -13.33046 -13.07767 -12.86254 -12.64473 -12.47054 -12.38033 -12.27706 -12.16206 -12.02390 -11.97300 -11.69505 -11.36840 -11.32084 -11.15766 -11.01992 -10.84932 -10.70910 -10.57085 -10.48382 -10.05776 -9.94702 -9.54354 -9.27300 -8.99916 -8.54808 -8.17838 -8.12291 -6.28144 -3.79421 1.92642 2.48757 3.04913 3.05431 3.09200 3.17062 3.77491 4.08620 4.13527 4.27608 4.41979 4.53349 4.66236 4.69375 4.81225 4.82953 4.84712 4.94113 4.96974 5.06253 5.16638 5.24193 5.27456 5.30497 5.34439 5.36037 5.36821 5.49037 5.57826 5.61717 5.68340 5.70338 5.72665 5.77922 5.82368 5.85195 5.89063 5.93579 5.96117 5.99553 6.11930 6.21151 6.27204 6.38689 6.75079 7.13219 7.27573 7.58787 7.61592 8.06042 8.17669 8.62902 8.98040 9.45551 9.85992 10.85037 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.002077 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.011374 B =13475.002076 C =15239.289766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.044 0.956 4 C -0.132 4.132 5 C 0.113 3.887 6 N -0.732 5.732 7 C 0.510 3.490 8 O -0.527 6.527 9 C -0.109 4.109 10 C -0.100 4.100 11 C -0.147 4.147 12 C -0.088 4.088 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.081 4.081 16 N -0.666 5.666 17 C 0.047 3.953 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.400 0.600 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.351 0.649 49 H 0.087 0.913 50 H 0.045 0.955 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 1.500 30.472 30.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.062 0.938 4 C -0.170 4.170 5 C -0.011 4.011 6 N -0.385 5.385 7 C 0.296 3.704 8 O -0.402 6.402 9 C -0.149 4.149 10 C -0.100 4.100 11 C -0.166 4.166 12 C -0.125 4.125 13 C -0.157 4.157 14 C -0.157 4.157 15 C -0.118 4.118 16 N -0.301 5.301 17 C -0.086 4.086 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.172 0.828 49 H 0.105 0.895 50 H 0.063 0.937 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.580 0.846 29.560 29.685 hybrid contribution -0.069 1.900 0.103 1.904 sum 2.511 2.746 29.663 29.896 Atomic orbital electron populations 1.21789 0.94224 1.02596 1.01115 1.21460 0.96264 0.95776 0.88960 0.93761 1.21978 0.93761 1.02849 0.98426 1.21457 0.94180 0.97452 0.88019 1.46003 1.07590 1.57677 1.27196 1.20645 0.82028 0.80464 0.87238 1.90755 1.55159 1.44944 1.49370 1.20859 0.94951 1.02284 0.96840 1.20281 0.93051 0.98112 0.98577 1.21844 0.96788 0.97467 1.00453 1.20409 0.92360 0.98466 1.01265 1.21603 0.99176 0.97591 0.97363 1.21582 0.95547 1.01269 0.97327 1.20351 0.94830 0.96680 0.99894 1.60198 1.35096 1.32019 1.02785 1.21761 1.01305 0.94070 0.91442 1.19716 0.84453 0.88218 0.84018 1.90563 1.53758 1.15883 1.84401 1.42209 1.60165 1.11090 1.09603 1.19433 1.39993 0.98026 0.85810 0.86291 1.25038 0.97535 0.98408 0.95238 1.69620 1.45260 1.36509 1.00806 0.86669 0.79005 0.85189 0.78524 1.19654 1.20177 1.19487 0.92849 0.92464 0.91754 0.90649 0.89981 0.90978 0.91633 0.76660 0.88561 0.88279 0.88275 0.91305 0.90869 0.91880 0.91803 0.91693 0.91363 0.91154 0.90766 0.82763 0.89460 0.93728 0.79711 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.41 37.16 0.35 -1.06 16 2 C 0.09 0.95 2.65 -67.71 -0.18 0.77 16 3 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 4 C -0.13 -1.15 4.92 -26.73 -0.13 -1.28 16 5 C 0.11 1.19 5.50 -4.04 -0.02 1.16 16 6 N -0.73 -6.44 5.56 -60.29 -0.33 -6.77 16 7 C 0.51 5.61 7.82 -10.99 -0.09 5.52 16 8 O -0.53 -8.35 16.03 5.56 0.09 -8.26 16 9 C -0.11 -0.82 5.71 -29.04 -0.17 -0.99 16 10 C -0.10 -0.92 4.33 -100.94 -0.44 -1.35 16 11 C -0.15 -1.30 9.37 -35.90 -0.34 -1.64 16 12 C -0.09 -0.69 6.11 -28.18 -0.17 -0.86 16 13 C -0.12 -0.89 6.01 -26.52 -0.16 -1.05 16 14 C -0.12 -1.06 6.01 -26.52 -0.16 -1.22 16 15 C -0.08 -0.74 5.80 -28.18 -0.16 -0.90 16 16 N -0.67 -10.29 5.93 -107.99 -0.64 -10.93 16 17 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 18 C 0.45 10.50 7.82 -10.98 -0.09 10.42 16 19 O -0.56 -15.53 15.78 5.55 0.09 -15.44 16 20 N -0.59 -14.45 5.09 -10.96 -0.06 -14.50 16 21 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 22 H 0.12 3.93 7.39 -52.48 -0.39 3.54 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.20 13.96 55.50 0.77 -25.42 16 25 Si 0.88 19.75 27.74 -169.99 -4.71 15.04 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.96 6.43 -51.93 -0.33 0.62 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.40 2.18 8.47 -40.82 -0.35 1.83 16 37 H 0.10 0.51 7.80 -51.93 -0.40 0.10 16 38 H 0.10 0.56 8.11 -51.93 -0.42 0.14 16 39 H 0.10 0.79 7.74 -52.49 -0.41 0.38 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.35 5.78 6.17 -39.29 -0.24 5.54 16 49 H 0.09 1.33 7.44 -51.93 -0.39 0.94 16 50 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 51 H 0.37 7.95 5.76 -40.82 -0.24 7.71 16 52 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 416.65 15.07 6.28 6.28 Total: -1.00 -35.99 416.65 -9.58 -45.57 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -9.04 Total: 14.06 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.03 Total: 0.38 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.26 Total: -57.63 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.18 Total: -23.70 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.71 Total: 15.04 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.99 -9.58 -45.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266130203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.947 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds