Wall clock time and date at job start Tue Mar 31 2020 20:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99980 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47261 * 180.02562 * 9 7 6 11 11 C 1.29440 * 117.95970 * 94.73408 * 10 9 7 12 12 C 1.50067 * 124.07125 * 180.23750 * 11 10 9 13 13 C 1.53026 * 110.20267 * 343.31962 * 12 11 10 14 14 C 1.53388 * 108.43567 * 49.25011 * 13 12 11 15 15 C 1.50071 * 117.96056 * 275.00243 * 10 9 7 16 16 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 17 17 C 1.46898 * 110.99888 * 85.00162 * 16 2 1 18 18 C 1.50705 * 109.46661 * 180.02562 * 17 16 2 19 19 O 1.21288 * 120.00125 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99549 * 179.97438 * 18 17 16 21 21 C 1.37103 * 120.00062 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99229 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00207 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00252 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00305 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47102 * 89.99542 * 25 23 21 27 27 H 1.48493 * 109.47421 * 209.99846 * 25 23 21 28 28 H 1.48497 * 109.46772 * 330.00472 * 25 23 21 29 29 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 30 30 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 31 31 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 33 33 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 34 34 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 35 35 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 36 36 H 0.97001 * 119.99987 * 0.02562 * 6 5 4 37 37 H 1.09004 * 109.47118 * 300.00011 * 9 7 6 38 38 H 1.09003 * 109.47094 * 60.00080 * 9 7 6 39 39 H 1.07988 * 117.96735 * 0.47308 * 11 10 9 40 40 H 1.09004 * 109.48160 * 223.00020 * 12 11 10 41 41 H 1.09003 * 109.18130 * 103.45059 * 12 11 10 42 42 H 1.08996 * 109.64088 * 289.56038 * 13 12 11 43 43 H 1.09003 * 109.63761 * 168.93440 * 13 12 11 44 44 H 1.09007 * 109.63975 * 172.87698 * 14 13 12 45 45 H 1.08998 * 109.64411 * 52.25243 * 14 13 12 46 46 H 1.08994 * 109.35559 * 283.05126 * 15 10 9 47 47 H 1.09000 * 109.35761 * 42.77835 * 15 10 9 48 48 H 1.00902 * 110.99923 * 208.96103 * 16 2 1 49 49 H 1.08995 * 109.47296 * 299.99911 * 17 16 2 50 50 H 1.08997 * 109.47334 * 60.00212 * 17 16 2 51 51 H 0.97003 * 120.00664 * 0.02562 * 20 18 17 52 52 H 0.97002 * 120.00635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0530 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7752 8 8 6.1583 -0.8006 2.0236 9 6 5.8762 -2.0494 4.0062 10 6 7.3781 -1.9432 4.0697 11 6 7.8896 -0.9830 4.7710 12 6 9.3636 -0.7466 4.9241 13 6 10.1451 -1.9936 4.5047 14 6 9.6242 -2.4557 3.1380 15 6 8.1876 -2.9537 3.3108 16 7 2.0196 -0.6925 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5872 -0.5217 -3.5561 19 8 2.8675 -1.6986 -3.4703 20 7 2.7271 0.1204 -4.7327 21 6 3.1869 -0.5566 -5.8327 22 1 3.4365 -1.6046 -5.7563 23 6 3.3306 0.1052 -7.0459 24 7 3.7708 -0.5438 -8.1004 25 14 2.8982 1.9177 -7.1782 26 1 4.0987 2.7366 -6.8726 27 1 2.4330 2.2163 -8.5564 28 1 1.8192 2.2409 -6.2105 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7717 1.2055 34 1 3.9994 -1.0730 0.4259 35 1 3.8532 0.4368 1.3573 36 1 3.4257 -1.7353 3.1109 37 1 5.4420 -1.5889 4.8937 38 1 5.5873 -3.0996 3.9636 39 1 7.2136 -0.3125 5.2806 40 1 9.5880 -0.5126 5.9648 41 1 9.6588 0.0933 4.2952 42 1 9.9959 -2.7841 5.2402 43 1 11.2058 -1.7534 4.4305 44 1 10.2499 -3.2653 2.7620 45 1 9.6408 -1.6204 2.4380 46 1 8.1952 -3.8957 3.8588 47 1 7.7412 -3.1104 2.3288 48 1 2.9172 -1.1206 -1.0288 49 1 1.0870 0.6165 -2.5525 50 1 2.7588 1.0462 -2.1182 51 1 2.5033 1.0618 -4.8013 52 1 3.8716 -0.0817 -8.9473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266130203.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:43 Heat of formation + Delta-G solvation = -105.944877 kcal Electronic energy + Delta-G solvation = -28562.564095 eV Core-core repulsion = 24560.037863 eV Total energy + Delta-G solvation = -4002.526233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.01815 -40.38958 -39.24531 -38.35707 -36.10709 -35.68675 -33.90200 -33.78251 -32.63311 -31.64794 -30.22270 -28.30041 -27.98812 -25.66656 -24.33396 -23.98281 -22.67465 -21.74728 -21.35560 -21.02640 -20.29413 -18.50011 -18.09900 -17.77695 -17.39796 -17.00347 -16.90167 -16.61476 -16.26386 -16.06874 -15.59625 -15.33669 -15.08188 -14.87424 -14.82638 -14.56859 -14.42580 -14.38557 -14.12086 -13.94255 -13.51832 -13.41440 -13.17862 -13.13947 -13.01393 -12.92550 -12.63981 -12.56539 -12.44224 -12.25479 -12.16745 -11.98674 -11.75256 -11.69436 -11.54230 -11.36421 -11.12927 -10.95447 -10.46489 -10.27749 -10.13129 -9.66860 -9.34520 -8.43633 -6.04809 1.24769 1.27912 1.33541 1.42535 1.65380 1.92289 2.20902 2.31980 2.70941 3.12409 3.38165 3.63681 3.78344 3.79933 3.89610 4.01700 4.04921 4.12112 4.14517 4.27216 4.33513 4.38614 4.45220 4.45907 4.51684 4.56383 4.58573 4.66108 4.68104 4.73372 4.74347 4.96469 4.97723 5.00094 5.01783 5.04395 5.07798 5.15939 5.19896 5.30639 5.42409 5.43892 5.47697 5.51285 5.74068 5.89082 6.07494 6.09249 6.36586 6.56942 6.57582 6.85076 7.29235 7.36525 7.93127 8.74088 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.002077 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.011374 B =13475.002076 C =15239.289766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.056 0.944 4 C -0.118 4.118 5 C 0.116 3.884 6 N -0.717 5.717 7 C 0.504 3.496 8 O -0.585 6.585 9 C -0.102 4.102 10 C -0.118 4.118 11 C -0.153 4.153 12 C -0.092 4.092 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.082 4.082 16 N -0.684 5.684 17 C 0.061 3.939 18 C 0.446 3.554 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.330 4.330 22 H 0.054 0.946 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.258 1.258 27 H -0.272 1.272 28 H -0.230 1.230 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.419 0.581 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.340 0.660 49 H 0.115 0.885 50 H 0.072 0.928 51 H 0.390 0.610 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 4.146 33.715 33.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.074 0.926 4 C -0.155 4.155 5 C -0.008 4.008 6 N -0.370 5.370 7 C 0.292 3.708 8 O -0.465 6.465 9 C -0.141 4.141 10 C -0.118 4.118 11 C -0.171 4.171 12 C -0.129 4.129 13 C -0.153 4.153 14 C -0.161 4.161 15 C -0.119 4.119 16 N -0.319 5.319 17 C -0.071 4.071 18 C 0.234 3.766 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.459 4.459 22 H 0.072 0.928 23 C -0.215 4.215 24 N -0.574 5.574 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.197 1.197 28 H -0.154 1.154 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.256 0.744 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.161 0.839 49 H 0.133 0.867 50 H 0.090 0.910 51 H 0.225 0.775 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.611 3.484 32.861 33.051 hybrid contribution 0.561 0.938 -0.887 1.407 sum 1.172 4.421 31.974 32.300 Atomic orbital electron populations 1.21784 0.93047 1.02323 1.02248 1.21644 0.96995 0.96161 0.87853 0.92638 1.21892 0.92024 1.02932 0.98691 1.21309 0.95455 0.96692 0.87383 1.45879 1.07485 1.56902 1.26754 1.21340 0.82097 0.79701 0.87637 1.90734 1.56651 1.47592 1.51483 1.20903 0.93921 1.03331 0.95991 1.20478 0.94141 0.98448 0.98740 1.22081 0.97505 0.97180 1.00351 1.20473 0.92002 0.98211 1.02190 1.21590 0.99551 0.97761 0.96384 1.21595 0.95942 1.00593 0.97933 1.20361 0.94800 0.97850 0.98913 1.60256 1.34668 1.32771 1.04203 1.21685 1.02839 0.93817 0.88801 1.21034 0.82295 0.87960 0.85264 1.90537 1.55350 1.18634 1.85428 1.42039 1.60527 1.11825 1.08854 1.19007 1.42389 0.96097 0.88418 0.92790 1.26143 0.96391 1.05141 0.93808 1.69803 1.46230 1.39600 1.01786 0.85354 0.80192 0.76343 0.79577 1.18279 1.19739 1.15372 0.89884 0.93182 0.92737 0.87207 0.90076 0.94496 0.92435 0.74356 0.85530 0.86137 0.87309 0.89417 0.91934 0.90759 0.90926 0.90985 0.93967 0.89337 0.93278 0.83948 0.86715 0.91033 0.77471 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.41 71.98 0.68 -1.63 16 2 C 0.08 1.62 2.65 44.91 0.12 1.74 16 3 H 0.06 1.00 7.80 -2.39 -0.02 0.98 16 4 C -0.12 -1.75 4.92 30.59 0.15 -1.60 16 5 C 0.12 2.36 5.50 86.38 0.48 2.84 16 6 N -0.72 -11.62 5.56 -463.06 -2.57 -14.19 16 7 C 0.50 10.87 7.82 87.66 0.69 11.55 16 8 O -0.58 -19.30 16.03 -3.04 -0.05 -19.35 16 9 C -0.10 -1.36 5.71 29.10 0.17 -1.19 16 10 C -0.12 -2.08 4.33 -15.09 -0.07 -2.15 16 11 C -0.15 -2.55 9.37 27.04 0.25 -2.30 16 12 C -0.09 -1.36 6.11 29.66 0.18 -1.18 16 13 C -0.12 -1.62 6.01 30.73 0.18 -1.44 16 14 C -0.12 -2.26 6.01 30.73 0.18 -2.08 16 15 C -0.08 -1.54 5.80 29.66 0.17 -1.36 16 16 N -0.68 -20.53 5.93 -495.58 -2.94 -23.47 16 17 C 0.06 1.96 5.97 85.56 0.51 2.47 16 18 C 0.45 21.14 7.82 87.66 0.69 21.83 16 19 O -0.61 -35.63 15.78 -3.05 -0.05 -35.68 16 20 N -0.59 -29.02 5.09 -306.99 -1.56 -30.59 16 21 C -0.33 -19.98 10.16 84.04 0.85 -19.13 16 22 H 0.05 3.89 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 24 N -0.93 -57.58 13.96 21.66 0.30 -57.28 16 25 Si 0.97 39.87 27.74 68.60 1.90 41.77 16 26 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.92 7.45 -2.39 -0.02 0.91 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 1.03 6.43 -2.39 -0.02 1.01 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.42 3.41 8.47 -92.71 -0.79 2.63 16 37 H 0.13 0.92 7.80 -2.39 -0.02 0.90 16 38 H 0.12 1.08 8.11 -2.39 -0.02 1.06 16 39 H 0.11 1.54 7.74 -2.92 -0.02 1.52 16 40 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 1.16 8.14 -2.38 -0.02 1.15 16 45 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.34 11.46 6.17 -89.69 -0.55 10.90 16 49 H 0.11 3.11 7.44 -2.39 -0.02 3.09 16 50 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 51 H 0.39 15.86 5.76 -92.71 -0.53 15.32 16 52 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -87.18 416.65 -0.27 -87.45 By element: Atomic # 1 Polarization: 46.41 SS G_CDS: -1.00 Total: 45.40 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.70 Total: 5.93 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -6.77 Total: -125.52 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -0.10 Total: -55.03 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.90 Total: 41.77 kcal Total: -87.18 -0.27 -87.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266130203.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.491 kcal (2) G-P(sol) polarization free energy of solvation -87.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds