Wall clock time and date at job start Tue Mar 31 2020 20:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47497 * 2 1 4 4 C 1.52999 * 109.46997 * 239.99975 * 2 1 3 5 5 C 1.53003 * 109.47204 * 175.00185 * 4 2 1 6 6 N 1.46499 * 109.47056 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99752 * 179.97438 * 6 5 4 8 8 O 1.21615 * 120.00464 * 359.97438 * 7 6 5 9 9 C 1.47109 * 119.99950 * 180.02562 * 7 6 5 10 10 C 1.31555 * 119.85188 * 180.02562 * 9 7 6 11 11 C 1.51416 * 120.29026 * 180.02562 * 10 9 7 12 12 C 1.53040 * 108.56865 * 288.40512 * 11 10 9 13 13 C 1.51777 * 110.80492 * 85.71573 * 12 11 10 14 14 C 1.51785 * 113.84475 * 293.05326 * 13 12 11 15 15 C 1.51411 * 119.85196 * 0.02562 * 9 7 6 16 16 N 1.46903 * 109.47350 * 120.00256 * 2 1 3 17 17 C 1.46902 * 110.99608 * 274.99871 * 16 2 1 18 18 C 1.50699 * 109.47040 * 179.97438 * 17 16 2 19 19 O 1.21291 * 120.00131 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00173 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00049 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00122 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99592 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00402 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99503 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47374 * 60.00218 * 25 23 21 27 27 H 1.48501 * 109.47176 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47523 * 299.99930 * 25 23 21 29 29 H 1.08996 * 109.47359 * 60.00168 * 1 2 3 30 30 H 1.09001 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47268 * 300.00074 * 1 2 3 32 32 H 1.08995 * 109.47808 * 55.00032 * 4 2 1 33 33 H 1.09006 * 109.46942 * 294.99958 * 4 2 1 34 34 H 1.09005 * 109.47197 * 59.99968 * 5 4 2 35 35 H 1.08997 * 109.46992 * 299.99967 * 5 4 2 36 36 H 0.97004 * 120.00525 * 0.02562 * 6 5 4 37 37 H 1.07996 * 119.85821 * 359.97438 * 10 9 7 38 38 H 1.08998 * 109.62150 * 48.13360 * 11 10 9 39 39 H 1.08996 * 109.61865 * 168.68713 * 11 10 9 40 40 H 1.09004 * 109.20888 * 206.05495 * 12 11 10 41 41 H 1.09001 * 109.21377 * 325.37457 * 12 11 10 42 42 H 1.08997 * 108.61105 * 171.93030 * 13 12 11 43 43 H 1.09001 * 108.61521 * 54.18536 * 13 12 11 44 44 H 1.08996 * 109.21048 * 306.60549 * 14 13 12 45 45 H 1.09001 * 109.17361 * 187.25738 * 14 13 12 46 46 H 1.08997 * 109.61774 * 11.29599 * 15 9 7 47 47 H 1.09001 * 109.61528 * 131.66014 * 15 9 7 48 48 H 1.00898 * 111.00320 * 151.04206 * 16 2 1 49 49 H 1.08999 * 109.47475 * 299.99866 * 17 16 2 50 50 H 1.09008 * 109.47171 * 60.00072 * 17 16 2 51 51 H 0.97005 * 119.99735 * 0.02562 * 20 18 17 52 52 H 0.97003 * 120.00493 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3045 -2.5096 7 6 5.3740 -1.3400 -2.7752 8 8 6.1604 -0.7979 -2.0225 9 6 5.8643 -2.0335 -3.9763 10 6 7.1542 -2.0668 -4.2325 11 6 7.6698 -2.7773 -5.4662 12 6 7.5195 -4.2860 -5.2582 13 6 6.1309 -4.7498 -5.6588 14 6 5.0254 -4.2217 -4.7627 15 6 4.8821 -2.7058 -4.9121 16 7 2.0197 -0.6926 1.1994 17 6 2.0825 0.2226 2.3468 18 6 2.5874 -0.5218 3.5560 19 8 2.8678 -1.6987 3.4702 20 7 2.7284 0.1205 4.7325 21 6 3.1882 -0.5566 5.8323 22 1 3.4379 -1.6045 5.7559 23 6 3.3330 0.1056 7.0453 24 7 3.0287 1.3805 7.1385 25 14 3.9588 -0.8172 8.5440 26 1 5.3149 -1.3540 8.2643 27 1 4.0217 0.1077 9.7042 28 1 3.0369 -1.9390 8.8555 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6054 -0.2618 -2.1370 33 1 1.7515 -1.7716 -1.2055 34 1 3.9994 -1.0729 -0.4260 35 1 3.8531 0.4369 -1.3574 36 1 3.4258 -1.7360 -3.1106 37 1 7.8485 -1.5845 -3.5604 38 1 7.0899 -2.4681 -6.3358 39 1 8.7208 -2.5317 -5.6176 40 1 8.2604 -4.8072 -5.8645 41 1 7.6871 -4.5217 -4.2073 42 1 6.1076 -5.8392 -5.6346 43 1 5.9363 -4.4234 -6.6804 44 1 5.2605 -4.4591 -3.7252 45 1 4.0845 -4.6995 -5.0356 46 1 3.8664 -2.4071 -4.6529 47 1 5.0982 -2.4147 -5.9401 48 1 2.9173 -1.1206 1.0287 49 1 2.7589 1.0462 2.1182 50 1 1.0870 0.6163 2.5525 51 1 2.5044 1.0619 4.8010 52 1 3.1301 1.8428 7.9852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267125631.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:01 Heat of formation + Delta-G solvation = -82.097697 kcal Electronic energy + Delta-G solvation = -28754.416275 eV Core-core repulsion = 24752.924134 eV Total energy + Delta-G solvation = -4001.492141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.33954 -38.59422 -38.20522 -37.10975 -34.88301 -33.85983 -32.98500 -32.42639 -31.44991 -31.01579 -29.01322 -26.43061 -26.08947 -24.89952 -24.00488 -23.11588 -21.52514 -20.79130 -20.37476 -19.24072 -18.53487 -17.84668 -17.54053 -16.61308 -16.10909 -15.81837 -15.44814 -15.25026 -15.02459 -14.91740 -14.47942 -14.25993 -14.07361 -13.88691 -13.68533 -13.59148 -13.44740 -13.36158 -13.00357 -12.47521 -12.40772 -12.15587 -12.05057 -11.84326 -11.67238 -11.58418 -11.51555 -11.26544 -11.21816 -11.12543 -11.09407 -11.00893 -10.89009 -10.74504 -10.40733 -10.17109 -9.95408 -9.45709 -9.43884 -9.16085 -8.39931 -8.03311 -7.91389 -6.37302 -3.77904 1.18042 2.98535 3.13403 3.23683 3.28737 3.33548 3.95833 4.12775 4.19953 4.35606 4.35660 4.41311 4.53381 4.58766 4.66403 4.75550 4.88727 4.93885 4.97185 5.06428 5.16009 5.19741 5.27915 5.29602 5.33410 5.39717 5.41036 5.44612 5.57236 5.65147 5.69151 5.71307 5.72717 5.76336 5.83770 5.86665 5.92230 5.95672 6.03455 6.08016 6.13078 6.25846 6.28582 6.29265 6.38436 7.27440 7.34000 7.59241 7.70188 8.08667 8.10716 8.66092 9.22265 9.59035 10.10798 10.80434 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.001955 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.607010 B =14320.572964 C =15527.286083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.112 3.888 6 N -0.724 5.724 7 C 0.550 3.450 8 O -0.541 6.541 9 C -0.182 4.182 10 C -0.069 4.069 11 C -0.096 4.096 12 C -0.116 4.116 13 C -0.119 4.119 14 C -0.118 4.118 15 C -0.079 4.079 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.399 0.601 37 H 0.126 0.874 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.349 0.651 49 H 0.044 0.956 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 -5.090 -29.701 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.063 0.937 4 C -0.170 4.170 5 C -0.012 4.012 6 N -0.377 5.377 7 C 0.338 3.662 8 O -0.419 6.419 9 C -0.185 4.185 10 C -0.088 4.088 11 C -0.134 4.134 12 C -0.153 4.153 13 C -0.156 4.156 14 C -0.155 4.155 15 C -0.116 4.116 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.235 0.765 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.171 0.829 49 H 0.062 0.938 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.603 -5.617 -28.851 29.437 hybrid contribution 0.580 0.656 0.500 1.008 sum 2.183 -4.961 -28.351 28.865 Atomic orbital electron populations 1.21781 0.94266 1.02497 1.01132 1.21453 0.96241 0.95811 0.88958 0.93734 1.21980 0.93689 1.02817 0.98533 1.21488 0.94265 0.97522 0.87897 1.45934 1.07555 1.57128 1.27067 1.18444 0.82230 0.79934 0.85592 1.90826 1.55408 1.46047 1.49613 1.21188 0.96075 1.03883 0.97319 1.23370 0.95564 0.93301 0.96611 1.20973 1.01648 0.95003 0.95734 1.21272 0.97135 0.94477 1.02430 1.21133 0.94331 1.00676 0.99508 1.21311 0.98860 0.94432 1.00907 1.20751 0.97295 0.95031 0.98571 1.60209 1.34961 1.32135 1.02799 1.21725 1.01259 0.93954 0.91347 1.19823 0.84881 0.88205 0.84448 1.90519 1.55278 1.16176 1.84759 1.41855 1.57816 1.12409 1.07990 1.19653 1.39949 0.96419 0.86817 0.88001 1.25260 0.97711 0.95794 0.99234 1.69602 1.48693 1.08850 1.27234 0.85916 0.79431 0.78817 0.80031 1.19920 1.21004 1.19907 0.92899 0.91855 0.92395 0.90678 0.90054 0.90879 0.91442 0.76455 0.85595 0.90316 0.90659 0.91385 0.91507 0.92049 0.92162 0.91490 0.91338 0.91468 0.90269 0.82931 0.93844 0.89585 0.77468 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.41 37.15 0.35 -1.18 16 2 C 0.09 1.04 2.65 -67.71 -0.18 0.86 16 3 H 0.04 0.53 7.80 -51.93 -0.40 0.12 16 4 C -0.13 -1.27 4.92 -26.73 -0.13 -1.40 16 5 C 0.11 1.29 5.50 -4.04 -0.02 1.27 16 6 N -0.72 -7.38 5.51 -61.49 -0.34 -7.71 16 7 C 0.55 6.89 7.75 -12.66 -0.10 6.79 16 8 O -0.54 -9.22 16.18 5.26 0.09 -9.13 16 9 C -0.18 -1.67 5.10 -102.53 -0.52 -2.19 16 10 C -0.07 -0.60 8.92 -35.81 -0.32 -0.92 16 11 C -0.10 -0.57 5.62 -27.51 -0.15 -0.72 16 12 C -0.12 -0.65 5.66 -27.33 -0.15 -0.81 16 13 C -0.12 -0.61 5.27 -27.97 -0.15 -0.76 16 14 C -0.12 -0.69 5.66 -27.35 -0.15 -0.85 16 15 C -0.08 -0.48 5.36 -27.54 -0.15 -0.63 16 16 N -0.67 -10.96 5.93 -107.99 -0.64 -11.60 16 17 C 0.05 0.91 5.96 -4.98 -0.03 0.88 16 18 C 0.44 10.79 7.82 -10.98 -0.09 10.71 16 19 O -0.58 -16.36 15.78 5.55 0.09 -16.27 16 20 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 21 C -0.30 -8.57 9.68 -14.93 -0.14 -8.71 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 25 Si 0.93 21.59 29.55 -169.99 -5.02 16.56 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.40 2.86 6.25 -40.82 -0.26 2.61 16 37 H 0.13 1.30 7.44 -52.49 -0.39 0.91 16 38 H 0.08 0.39 6.75 -51.93 -0.35 0.04 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.26 7.88 -51.93 -0.41 -0.15 16 44 H 0.07 0.50 7.85 -51.93 -0.41 0.10 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.33 5.99 -51.93 -0.31 0.02 16 47 H 0.08 0.40 6.76 -51.93 -0.35 0.05 16 48 H 0.35 6.10 6.17 -39.29 -0.24 5.86 16 49 H 0.04 0.73 8.06 -51.93 -0.42 0.32 16 50 H 0.09 1.45 7.44 -51.92 -0.39 1.06 16 51 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 52 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -34.56 410.17 -9.72 -44.28 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -8.69 Total: 14.02 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.04 Total: 2.84 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.31 Total: -58.47 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.17 Total: -25.41 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.56 -9.72 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267125631.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.822 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds