Wall clock time and date at job start Tue Mar 31 2020 20:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47497 * 2 1 4 4 C 1.52999 * 109.46997 * 239.99975 * 2 1 3 5 5 C 1.53003 * 109.47204 * 175.00185 * 4 2 1 6 6 N 1.46499 * 109.47056 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99752 * 179.97438 * 6 5 4 8 8 O 1.21615 * 120.00464 * 359.97438 * 7 6 5 9 9 C 1.47109 * 119.99950 * 180.02562 * 7 6 5 10 10 C 1.31555 * 119.85188 * 180.02562 * 9 7 6 11 11 C 1.51416 * 120.29026 * 180.02562 * 10 9 7 12 12 C 1.53040 * 108.56865 * 288.40512 * 11 10 9 13 13 C 1.51777 * 110.80492 * 85.71573 * 12 11 10 14 14 C 1.51785 * 113.84475 * 293.05326 * 13 12 11 15 15 C 1.51411 * 119.85196 * 0.02562 * 9 7 6 16 16 N 1.46903 * 109.47350 * 120.00256 * 2 1 3 17 17 C 1.46902 * 110.99608 * 274.99871 * 16 2 1 18 18 C 1.50699 * 109.47040 * 179.97438 * 17 16 2 19 19 O 1.21291 * 120.00131 * 0.02562 * 18 17 16 20 20 N 1.34782 * 120.00173 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00049 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00122 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99592 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00402 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99503 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47374 * 60.00218 * 25 23 21 27 27 H 1.48501 * 109.47176 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.47523 * 299.99930 * 25 23 21 29 29 H 1.08996 * 109.47359 * 60.00168 * 1 2 3 30 30 H 1.09001 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47268 * 300.00074 * 1 2 3 32 32 H 1.08995 * 109.47808 * 55.00032 * 4 2 1 33 33 H 1.09006 * 109.46942 * 294.99958 * 4 2 1 34 34 H 1.09005 * 109.47197 * 59.99968 * 5 4 2 35 35 H 1.08997 * 109.46992 * 299.99967 * 5 4 2 36 36 H 0.97004 * 120.00525 * 0.02562 * 6 5 4 37 37 H 1.07996 * 119.85821 * 359.97438 * 10 9 7 38 38 H 1.08998 * 109.62150 * 48.13360 * 11 10 9 39 39 H 1.08996 * 109.61865 * 168.68713 * 11 10 9 40 40 H 1.09004 * 109.20888 * 206.05495 * 12 11 10 41 41 H 1.09001 * 109.21377 * 325.37457 * 12 11 10 42 42 H 1.08997 * 108.61105 * 171.93030 * 13 12 11 43 43 H 1.09001 * 108.61521 * 54.18536 * 13 12 11 44 44 H 1.08996 * 109.21048 * 306.60549 * 14 13 12 45 45 H 1.09001 * 109.17361 * 187.25738 * 14 13 12 46 46 H 1.08997 * 109.61774 * 11.29599 * 15 9 7 47 47 H 1.09001 * 109.61528 * 131.66014 * 15 9 7 48 48 H 1.00898 * 111.00320 * 151.04206 * 16 2 1 49 49 H 1.08999 * 109.47475 * 299.99866 * 17 16 2 50 50 H 1.09008 * 109.47171 * 60.00072 * 17 16 2 51 51 H 0.97005 * 119.99735 * 0.02562 * 20 18 17 52 52 H 0.97003 * 120.00493 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3045 -2.5096 7 6 5.3740 -1.3400 -2.7752 8 8 6.1604 -0.7979 -2.0225 9 6 5.8643 -2.0335 -3.9763 10 6 7.1542 -2.0668 -4.2325 11 6 7.6698 -2.7773 -5.4662 12 6 7.5195 -4.2860 -5.2582 13 6 6.1309 -4.7498 -5.6588 14 6 5.0254 -4.2217 -4.7627 15 6 4.8821 -2.7058 -4.9121 16 7 2.0197 -0.6926 1.1994 17 6 2.0825 0.2226 2.3468 18 6 2.5874 -0.5218 3.5560 19 8 2.8678 -1.6987 3.4702 20 7 2.7284 0.1205 4.7325 21 6 3.1882 -0.5566 5.8323 22 1 3.4379 -1.6045 5.7559 23 6 3.3330 0.1056 7.0453 24 7 3.0287 1.3805 7.1385 25 14 3.9588 -0.8172 8.5440 26 1 5.3149 -1.3540 8.2643 27 1 4.0217 0.1077 9.7042 28 1 3.0369 -1.9390 8.8555 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6054 -0.2618 -2.1370 33 1 1.7515 -1.7716 -1.2055 34 1 3.9994 -1.0729 -0.4260 35 1 3.8531 0.4369 -1.3574 36 1 3.4258 -1.7360 -3.1106 37 1 7.8485 -1.5845 -3.5604 38 1 7.0899 -2.4681 -6.3358 39 1 8.7208 -2.5317 -5.6176 40 1 8.2604 -4.8072 -5.8645 41 1 7.6871 -4.5217 -4.2073 42 1 6.1076 -5.8392 -5.6346 43 1 5.9363 -4.4234 -6.6804 44 1 5.2605 -4.4591 -3.7252 45 1 4.0845 -4.6995 -5.0356 46 1 3.8664 -2.4071 -4.6529 47 1 5.0982 -2.4147 -5.9401 48 1 2.9173 -1.1206 1.0287 49 1 2.7589 1.0462 2.1182 50 1 1.0870 0.6163 2.5525 51 1 2.5044 1.0619 4.8010 52 1 3.1301 1.8428 7.9852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267125631.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:00 Heat of formation + Delta-G solvation = -107.121186 kcal Electronic energy + Delta-G solvation = -28755.501375 eV Core-core repulsion = 24752.924134 eV Total energy + Delta-G solvation = -4002.577241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22345 -40.25882 -39.03129 -38.33991 -36.12778 -35.78481 -33.65237 -33.34120 -32.99518 -32.36479 -29.91619 -28.09799 -26.72379 -25.94962 -25.35012 -23.98203 -22.39512 -21.43540 -21.20993 -21.10659 -19.95230 -19.36030 -18.22175 -17.90967 -17.40093 -16.95058 -16.80991 -16.46673 -16.11858 -15.87423 -15.75453 -15.60747 -15.29554 -15.02233 -14.66640 -14.47622 -14.39161 -14.09103 -14.03034 -13.83705 -13.52203 -13.37141 -13.17630 -12.94565 -12.88144 -12.62509 -12.59945 -12.46369 -12.30734 -12.22416 -12.13442 -12.08128 -11.74911 -11.61914 -11.53061 -11.52826 -11.33085 -10.90690 -10.38152 -10.30536 -10.04533 -9.93194 -9.35048 -8.48762 -5.97875 0.39215 1.37865 1.39278 1.50761 2.02031 2.11171 2.23195 2.27391 2.90959 3.17891 3.48353 3.61981 3.72393 3.76288 3.94162 3.98665 4.06830 4.09520 4.12343 4.22595 4.27907 4.41705 4.45855 4.46290 4.50992 4.57230 4.58831 4.64505 4.75415 4.82712 4.86718 4.94452 4.95307 4.99540 5.02435 5.17301 5.23143 5.26301 5.27707 5.32774 5.34407 5.38042 5.46739 5.50473 5.53958 5.64297 5.89133 6.11132 6.37349 6.49838 6.57455 7.09669 7.17169 7.52894 8.08453 8.68424 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.001955 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.607010 B =14320.572964 C =15527.286083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.052 0.948 4 C -0.117 4.117 5 C 0.115 3.885 6 N -0.708 5.708 7 C 0.539 3.461 8 O -0.598 6.598 9 C -0.189 4.189 10 C -0.070 4.070 11 C -0.090 4.090 12 C -0.115 4.115 13 C -0.119 4.119 14 C -0.117 4.117 15 C -0.073 4.073 16 N -0.680 5.680 17 C 0.064 3.936 18 C 0.435 3.565 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.919 5.919 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.268 1.268 28 H -0.271 1.271 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.340 0.660 49 H 0.061 0.939 50 H 0.106 0.894 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -5.128 -32.121 32.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.155 4.155 5 C -0.010 4.010 6 N -0.361 5.361 7 C 0.329 3.671 8 O -0.481 6.481 9 C -0.192 4.192 10 C -0.090 4.090 11 C -0.127 4.127 12 C -0.153 4.153 13 C -0.157 4.157 14 C -0.155 4.155 15 C -0.110 4.110 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.560 5.560 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.196 1.196 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.256 0.744 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.117 0.883 48 H 0.160 0.840 49 H 0.079 0.921 50 H 0.124 0.876 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.291 -5.641 -31.311 31.817 hybrid contribution 0.984 0.681 1.232 1.718 sum 1.275 -4.960 -30.079 30.512 Atomic orbital electron populations 1.21772 0.92943 1.02410 1.02169 1.21642 0.97101 0.96041 0.87944 0.93018 1.21893 0.91776 1.03054 0.98729 1.21368 0.95695 0.96739 0.87152 1.45805 1.07289 1.56323 1.26684 1.19128 0.82444 0.79377 0.86107 1.90791 1.56851 1.48699 1.51751 1.21279 0.96954 1.04235 0.96712 1.23536 0.95214 0.92902 0.97370 1.21016 1.02355 0.94721 0.94560 1.21283 0.98215 0.94319 1.01477 1.21149 0.93499 1.00892 1.00132 1.21319 0.99979 0.94424 0.99752 1.20811 0.96917 0.94690 0.98572 1.60269 1.34506 1.32624 1.04046 1.21584 1.02185 0.93695 0.89337 1.20921 0.83275 0.88022 0.85494 1.90483 1.56705 1.18285 1.85616 1.41930 1.58231 1.12555 1.08251 1.19631 1.42362 0.95964 0.88624 0.90434 1.26074 0.97180 0.96687 1.01423 1.69663 1.48412 1.09670 1.28252 0.84973 0.78655 0.77872 0.76726 1.19849 1.19256 1.19575 0.89774 0.92491 0.93471 0.87105 0.89854 0.94247 0.92257 0.74391 0.88224 0.88442 0.89820 0.89887 0.93577 0.91749 0.90421 0.93851 0.89741 0.90141 0.88338 0.84014 0.92140 0.87597 0.76964 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.41 71.98 0.68 -1.95 16 2 C 0.08 1.84 2.65 44.91 0.12 1.96 16 3 H 0.05 1.12 7.80 -2.39 -0.02 1.10 16 4 C -0.12 -2.01 4.92 30.60 0.15 -1.86 16 5 C 0.11 2.66 5.50 86.38 0.48 3.13 16 6 N -0.71 -14.15 5.51 -466.70 -2.57 -16.72 16 7 C 0.54 14.01 7.75 86.57 0.67 14.68 16 8 O -0.60 -21.93 16.18 -4.08 -0.07 -22.00 16 9 C -0.19 -3.43 5.10 -17.87 -0.09 -3.52 16 10 C -0.07 -1.26 8.92 25.35 0.23 -1.03 16 11 C -0.09 -0.92 5.62 30.09 0.17 -0.75 16 12 C -0.12 -1.14 5.66 30.21 0.17 -0.97 16 13 C -0.12 -0.95 5.27 29.79 0.16 -0.80 16 14 C -0.12 -1.16 5.66 30.19 0.17 -0.99 16 15 C -0.07 -0.72 5.36 30.07 0.16 -0.56 16 16 N -0.68 -22.32 5.93 -495.57 -2.94 -25.26 16 17 C 0.06 2.35 5.96 85.56 0.51 2.86 16 18 C 0.44 21.92 7.82 87.66 0.69 22.60 16 19 O -0.62 -36.45 15.78 -3.06 -0.05 -36.50 16 20 N -0.57 -30.79 5.29 -306.98 -1.62 -32.41 16 21 C -0.34 -19.87 9.68 84.04 0.81 -19.06 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.99 13.05 21.66 0.28 -50.71 16 25 Si 0.99 44.34 29.55 68.60 2.03 46.37 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.02 7.45 -2.39 -0.02 1.00 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.04 1.19 6.43 -2.38 -0.02 1.18 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.42 5.19 6.25 -92.71 -0.58 4.61 16 37 H 0.10 2.28 7.44 -2.91 -0.02 2.26 16 38 H 0.10 0.68 6.75 -2.39 -0.02 0.66 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.05 0.65 7.85 -2.39 -0.02 0.63 16 42 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.08 0.39 7.88 -2.39 -0.02 0.37 16 44 H 0.04 0.64 7.85 -2.39 -0.02 0.62 16 45 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.08 0.56 5.99 -2.39 -0.01 0.55 16 47 H 0.10 0.65 6.76 -2.39 -0.02 0.63 16 48 H 0.34 12.27 6.17 -89.70 -0.55 11.72 16 49 H 0.06 2.01 8.06 -2.39 -0.02 1.99 16 50 H 0.11 3.46 7.44 -2.38 -0.02 3.44 16 51 H 0.40 20.19 7.90 -92.70 -0.73 19.46 16 52 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -79.08 410.17 -0.33 -79.41 By element: Atomic # 1 Polarization: 45.27 SS G_CDS: -0.92 Total: 44.35 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.53 Total: 13.47 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -6.85 Total: -125.10 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -0.11 Total: -58.50 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -79.08 -0.33 -79.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267125631.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.708 kcal (2) G-P(sol) polarization free energy of solvation -79.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds