Wall clock time and date at job start Tue Mar 31 2020 20:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47219 * 2 1 4 4 C 1.53004 * 109.46788 * 239.99769 * 2 1 3 5 5 C 1.53004 * 109.46704 * 174.99951 * 4 2 1 6 6 N 1.46498 * 109.46956 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00009 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00075 * 180.02562 * 7 6 5 10 10 C 1.53001 * 110.43671 * 179.97438 * 9 7 6 11 11 C 1.54887 * 110.48548 * 184.13261 * 10 9 7 12 12 C 1.54893 * 102.74533 * 156.62347 * 11 10 9 13 13 C 1.54266 * 104.19500 * 322.05712 * 12 11 10 14 14 C 1.53872 * 106.60044 * 23.61099 * 13 12 11 15 15 C 1.54633 * 110.59708 * 302.61630 * 9 7 6 16 16 C 1.54480 * 101.76597 * 93.93696 * 15 9 7 17 17 N 1.46759 * 105.47169 * 25.41576 * 16 15 9 18 18 C 1.34423 * 111.30408 * 342.98276 * 17 16 15 19 19 O 1.21279 * 124.94297 * 180.37080 * 18 17 16 20 20 N 1.46503 * 109.46806 * 120.00108 * 2 1 3 21 21 C 1.36935 * 119.99822 * 274.99319 * 20 2 1 22 22 H 1.08001 * 120.00091 * 0.02562 * 21 20 2 23 23 C 1.38812 * 120.00014 * 180.02562 * 21 20 2 24 24 N 1.31623 * 119.99871 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00024 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47144 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46861 * 120.00187 * 25 23 21 28 28 H 1.48502 * 109.46987 * 239.99617 * 25 23 21 29 29 H 1.08995 * 109.47270 * 60.00074 * 1 2 3 30 30 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46803 * 300.00005 * 1 2 3 32 32 H 1.08993 * 109.47169 * 55.00388 * 4 2 1 33 33 H 1.09002 * 109.46935 * 294.99883 * 4 2 1 34 34 H 1.09006 * 109.46933 * 59.99989 * 5 4 2 35 35 H 1.08992 * 109.47117 * 300.00167 * 5 4 2 36 36 H 0.97009 * 119.99988 * 0.02562 * 6 5 4 37 37 H 1.09001 * 110.53587 * 61.52068 * 10 9 7 38 38 H 1.09001 * 110.75744 * 274.93249 * 11 10 9 39 39 H 1.09000 * 110.75698 * 38.31067 * 11 10 9 40 40 H 1.09002 * 110.48578 * 203.38190 * 12 11 10 41 41 H 1.09001 * 110.49013 * 80.73631 * 12 11 10 42 42 H 1.09002 * 110.02957 * 264.32709 * 13 12 11 43 43 H 1.09000 * 110.07144 * 142.92082 * 13 12 11 44 44 H 1.09003 * 110.03622 * 240.71485 * 14 13 12 45 45 H 1.09003 * 110.07498 * 119.30332 * 14 13 12 46 46 H 1.08996 * 110.97057 * 212.05529 * 15 9 7 47 47 H 1.08999 * 110.96811 * 335.81827 * 15 9 7 48 48 H 1.09001 * 110.24551 * 266.41916 * 16 15 9 49 49 H 1.08994 * 110.31890 * 144.45838 * 16 15 9 50 50 H 0.97001 * 124.34829 * 162.96527 * 17 16 15 51 51 H 0.97001 * 120.00024 * 94.99870 * 20 2 1 52 52 H 0.97005 * 119.99669 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3045 -2.5095 7 6 5.3741 -1.3408 -2.7746 8 8 6.1584 -0.8009 -2.0235 9 6 5.8764 -2.0513 -4.0050 10 6 7.4011 -1.9570 -4.0914 11 6 7.9101 -2.5963 -5.4072 12 6 9.2789 -1.9024 -5.6170 13 6 9.0401 -0.4485 -5.1598 14 6 7.8462 -0.4832 -4.1898 15 6 5.4245 -3.5302 -4.0019 16 6 4.1208 -3.4629 -4.8278 17 7 4.2641 -2.2843 -5.6904 18 6 5.2393 -1.4714 -5.2486 19 8 5.5620 -0.4257 -5.7712 20 7 2.0183 -0.6907 1.1962 21 6 2.1492 -0.0075 2.3757 22 1 1.8920 1.0403 2.4243 23 6 2.6123 -0.6617 3.5090 24 7 2.9261 -1.9386 3.4497 25 14 2.7901 0.2700 5.1183 26 1 2.3743 1.6819 4.9213 27 1 1.9299 -0.3593 6.1523 28 1 4.2071 0.2279 5.5607 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7516 -1.7716 -1.2055 34 1 3.9995 -1.0729 -0.4259 35 1 3.8532 0.4368 -1.3574 36 1 3.4258 -1.7360 -3.1105 37 1 7.8634 -2.4384 -3.2296 38 1 8.0366 -3.6726 -5.2901 39 1 7.2335 -2.3731 -6.2321 40 1 9.5632 -1.9296 -6.6690 41 1 10.0446 -2.3749 -5.0016 42 1 8.8048 0.1792 -6.0193 43 1 9.9246 -0.0667 -4.6499 44 1 7.0314 0.1277 -4.5784 45 1 8.1505 -0.1188 -3.2086 46 1 6.1636 -4.1649 -4.4907 47 1 5.2261 -3.8752 -2.9872 48 1 3.2616 -3.3448 -4.1674 49 1 4.0095 -4.3623 -5.4333 50 1 3.7246 -2.1138 -6.4783 51 1 2.2490 -1.6318 1.1526 52 1 3.2501 -2.3957 4.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267133115.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:29 Heat of formation + Delta-G solvation = -102.262897 kcal Electronic energy + Delta-G solvation = -30956.187973 eV Core-core repulsion = 26953.821403 eV Total energy + Delta-G solvation = -4002.366570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.72422 -40.06279 -38.62000 -38.06417 -37.56270 -35.83815 -34.15112 -33.29611 -31.06281 -29.85868 -29.71406 -29.45504 -27.34506 -25.86155 -24.53025 -23.21053 -22.90499 -21.94678 -21.29049 -21.16849 -20.01051 -19.26938 -18.66465 -18.47173 -17.33446 -16.94485 -16.57640 -16.44772 -16.13817 -15.84264 -15.69864 -15.41208 -15.30860 -15.03655 -14.88962 -14.45533 -14.22851 -14.17257 -14.02653 -13.81717 -13.58830 -13.25579 -13.18932 -12.86194 -12.65313 -12.61736 -12.33151 -12.28775 -12.25971 -12.11539 -12.01043 -11.95262 -11.87671 -11.65412 -11.61830 -11.55936 -11.37364 -10.98777 -10.88968 -10.52388 -10.18385 -10.12556 -8.97362 -7.92814 -5.19001 1.21533 1.45479 1.47109 1.51594 1.55761 2.03361 2.33990 2.56818 3.18080 3.30689 3.39227 3.41575 3.72491 3.77709 3.84441 3.88826 3.95296 3.99351 4.18069 4.23410 4.32696 4.38065 4.56376 4.58624 4.64472 4.68282 4.72829 4.74656 4.79510 4.81208 4.86749 4.90831 4.98559 5.00351 5.04262 5.08812 5.10916 5.18082 5.22878 5.32438 5.36476 5.38181 5.46270 5.50088 5.54330 5.60560 5.74443 5.96820 6.30682 6.41354 7.09846 7.17576 7.37109 8.14000 8.36288 9.30703 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.002831 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.606052 B = 9889.424521 C =10808.607133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.132 3.868 6 N -0.711 5.711 7 C 0.522 3.478 8 O -0.565 6.565 9 C -0.108 4.108 10 C -0.057 4.057 11 C -0.110 4.110 12 C -0.118 4.118 13 C -0.122 4.122 14 C -0.131 4.131 15 C -0.125 4.125 16 C 0.093 3.907 17 N -0.712 5.712 18 C 0.533 3.467 19 O -0.550 6.550 20 N -0.733 5.733 21 C -0.232 4.232 22 H 0.071 0.929 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.963 3.037 26 H -0.269 1.269 27 H -0.292 1.292 28 H -0.298 1.298 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.410 0.590 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.123 0.877 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.131 0.869 50 H 0.426 0.574 51 H 0.373 0.627 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 -8.225 -25.825 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.056 0.944 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.308 3.692 8 O -0.442 6.442 9 C -0.115 4.115 10 C -0.077 4.077 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.160 4.160 14 C -0.168 4.168 15 C -0.163 4.163 16 C -0.031 4.031 17 N -0.368 5.368 18 C 0.317 3.683 19 O -0.428 6.428 20 N -0.374 5.374 21 C -0.364 4.364 22 H 0.089 0.911 23 C -0.268 4.268 24 N -0.618 5.618 25 Si 0.794 3.206 26 H -0.193 1.193 27 H -0.219 1.219 28 H -0.226 1.226 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.248 0.752 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.141 0.859 47 H 0.117 0.883 48 H 0.106 0.894 49 H 0.149 0.851 50 H 0.267 0.733 51 H 0.206 0.794 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.987 -7.142 -25.350 26.637 hybrid contribution -0.182 0.486 1.127 1.241 sum 3.804 -6.656 -24.223 25.408 Atomic orbital electron populations 1.22255 0.96949 1.01257 1.00797 1.20430 0.93269 0.95010 0.85696 0.94441 1.21912 0.92152 1.02477 0.98788 1.21147 0.95648 0.95846 0.86525 1.45995 1.06987 1.56551 1.26926 1.20435 0.82527 0.79774 0.86505 1.90728 1.56335 1.46393 1.50788 1.21706 0.98914 0.99326 0.91542 1.21678 0.89385 0.96790 0.99803 1.22601 0.96716 1.00635 0.94807 1.22324 0.97228 0.94205 1.01792 1.22099 0.97275 0.98270 0.98327 1.22315 0.98942 0.97061 0.98521 1.22983 0.98822 0.90867 1.03596 1.22486 0.97380 0.89366 0.93846 1.46166 1.36163 1.23742 1.30766 1.20275 0.80174 0.83310 0.84510 1.90708 1.65250 1.24131 1.62687 1.42614 1.78386 1.10266 1.06151 1.19595 1.34349 0.93996 0.88480 0.91103 1.25437 1.03301 0.96889 1.01141 1.69798 1.52867 1.10013 1.29125 0.85209 0.76604 0.78284 0.80542 1.19308 1.21945 1.22596 0.90807 0.93218 0.94862 0.88272 0.90166 0.93710 0.93840 0.75228 0.89988 0.88419 0.92039 0.90423 0.90551 0.92704 0.92021 0.91878 0.94215 0.85883 0.88289 0.89387 0.85125 0.73274 0.79429 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.49 71.98 0.68 -4.24 16 2 C 0.16 6.09 2.89 44.99 0.13 6.22 16 3 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 4 C -0.11 -3.23 4.87 30.60 0.15 -3.09 16 5 C 0.13 4.46 5.56 86.38 0.48 4.94 16 6 N -0.71 -18.93 5.36 -463.06 -2.48 -21.41 16 7 C 0.52 16.00 6.25 87.66 0.55 16.55 16 8 O -0.56 -23.16 14.64 -3.03 -0.04 -23.20 16 9 C -0.11 -2.33 0.38 -52.93 -0.02 -2.35 16 10 C -0.06 -1.33 1.94 -9.72 -0.02 -1.35 16 11 C -0.11 -1.80 5.35 31.89 0.17 -1.63 16 12 C -0.12 -2.01 6.83 31.67 0.22 -1.79 16 13 C -0.12 -2.82 6.80 31.32 0.21 -2.61 16 14 C -0.13 -3.84 4.83 31.32 0.15 -3.69 16 15 C -0.12 -1.42 5.99 31.65 0.19 -1.23 16 16 C 0.09 0.54 6.98 86.83 0.61 1.15 16 17 N -0.71 -7.85 6.24 -459.82 -2.87 -10.72 16 18 C 0.53 11.37 5.26 87.90 0.46 11.84 16 19 O -0.55 -16.52 15.15 -3.03 -0.05 -16.56 16 20 N -0.73 -35.82 4.57 -322.92 -1.48 -37.29 16 21 C -0.23 -12.90 9.93 84.03 0.83 -12.06 16 22 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 23 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 24 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 25 Si 0.96 47.25 29.55 68.60 2.03 49.28 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.30 -14.84 7.11 99.48 0.71 -14.14 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.91 7.75 -2.38 -0.02 1.89 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.41 7.66 6.02 -92.70 -0.56 7.10 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 38 H 0.10 1.02 7.48 -2.39 -0.02 1.01 16 39 H 0.06 1.08 6.62 -2.39 -0.02 1.06 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 2.17 5.22 -2.39 -0.01 2.16 16 45 H 0.04 1.36 7.48 -2.39 -0.02 1.34 16 46 H 0.12 0.83 6.57 -2.39 -0.02 0.82 16 47 H 0.10 1.22 7.90 -2.39 -0.02 1.20 16 48 H 0.09 0.38 6.83 -2.39 -0.02 0.36 16 49 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.43 3.07 8.96 -92.71 -0.83 2.24 16 51 H 0.37 19.50 7.80 -92.71 -0.72 18.77 16 52 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -80.76 399.29 -0.52 -81.28 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -1.17 Total: 34.97 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.26 Total: 2.76 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -6.55 Total: -128.52 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.09 Total: -39.76 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -80.76 -0.52 -81.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267133115.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.987 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds