Wall clock time and date at job start Tue Mar 31 2020 20:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46537 * 2 1 4 4 C 1.52996 * 109.46715 * 119.99507 * 2 1 3 5 5 C 1.50702 * 109.46646 * 185.00100 * 4 2 1 6 6 O 1.21281 * 120.00415 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00090 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00415 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.63882 * 36.68599 * 8 7 5 10 10 C 1.55160 * 110.87416 * 159.93607 * 8 7 5 11 11 C 1.55124 * 101.48722 * 82.77026 * 10 8 7 12 12 N 1.47425 * 104.72444 * 37.29072 * 11 10 8 13 13 C 1.36936 * 125.64977 * 155.81615 * 12 11 10 14 14 H 1.07998 * 119.99721 * 5.53611 * 13 12 11 15 15 C 1.38809 * 120.00090 * 185.52815 * 13 12 11 16 16 N 1.31615 * 120.00230 * 7.33747 * 15 13 12 17 17 Si 1.86802 * 119.99897 * 187.33068 * 15 13 12 18 18 H 1.48497 * 109.47422 * 265.01612 * 17 15 13 19 19 H 1.48499 * 109.46986 * 25.01439 * 17 15 13 20 20 H 1.48502 * 109.47269 * 145.01332 * 17 15 13 21 21 C 1.47019 * 108.70418 * 335.56047 * 12 11 10 22 22 N 1.46492 * 109.47013 * 239.99865 * 2 1 3 23 23 C 1.34774 * 120.00438 * 85.00442 * 22 2 1 24 24 O 1.21289 * 119.99896 * 359.97438 * 23 22 2 25 25 C 1.50694 * 120.00564 * 179.97438 * 23 22 2 26 26 C 1.54265 * 110.03424 * 297.16388 * 25 23 22 27 27 C 1.54886 * 104.19949 * 217.10434 * 26 25 23 28 28 C 1.54887 * 102.74878 * 37.93837 * 27 26 25 29 29 C 1.53875 * 110.03872 * 179.97438 * 25 23 22 30 30 H 1.08998 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47345 * 299.99888 * 1 2 3 32 32 H 1.08997 * 109.46799 * 60.00292 * 1 2 3 33 33 H 1.08999 * 109.47398 * 65.00868 * 4 2 1 34 34 H 1.08993 * 109.47494 * 304.99908 * 4 2 1 35 35 H 0.97002 * 119.99905 * 359.97438 * 7 5 4 36 36 H 1.09004 * 111.00376 * 201.00808 * 10 8 7 37 37 H 1.08993 * 111.00376 * 324.85632 * 10 8 7 38 38 H 1.09007 * 110.49094 * 278.45471 * 11 10 8 39 39 H 1.08993 * 110.34397 * 156.05723 * 11 10 8 40 40 H 0.97002 * 120.00013 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.88756 * 120.70173 * 21 12 11 42 42 H 1.09007 * 109.88075 * 241.71132 * 21 12 11 43 43 H 0.96999 * 119.99956 * 264.99161 * 22 2 1 44 44 H 1.09008 * 110.01601 * 58.60320 * 25 23 22 45 45 H 1.09000 * 110.48323 * 335.78531 * 26 25 23 46 46 H 1.09006 * 110.48879 * 98.41971 * 26 25 23 47 47 H 1.09002 * 110.75431 * 279.62319 * 27 26 25 48 48 H 1.08998 * 110.75824 * 156.25402 * 27 26 25 49 49 H 1.08993 * 110.48899 * 203.38047 * 28 27 26 50 50 H 1.09006 * 110.48351 * 80.73485 * 28 27 26 51 51 H 1.08999 * 110.03541 * 238.57210 * 29 25 23 52 52 H 1.09003 * 110.02573 * 359.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1450 -0.0203 0.4446 7 7 4.2150 -1.1803 2.3344 8 6 5.6749 -1.0764 2.3964 9 1 6.0065 -0.1026 2.0359 10 6 6.1864 -1.3311 3.8390 11 6 6.2259 -2.8812 3.8836 12 7 6.6744 -3.2835 2.5381 13 6 7.2963 -4.4622 2.2235 14 1 7.4160 -5.2273 2.9762 15 6 7.7728 -4.6737 0.9370 16 7 7.7582 -3.6923 0.0601 17 14 8.4351 -6.3512 0.4502 18 1 9.9103 -6.3690 0.6189 19 1 7.8255 -7.3937 1.3144 20 1 8.0958 -6.6245 -0.9694 21 6 6.3380 -2.2123 1.5891 22 7 2.0184 -0.6906 -1.1961 23 6 2.1472 -0.0184 -2.3571 24 8 1.8584 1.1584 -2.4117 25 6 2.6500 -0.7286 -3.5874 26 6 4.0917 -1.2271 -3.3577 27 6 4.7860 -1.0259 -4.7275 28 6 4.1811 0.3105 -5.2244 29 6 2.7063 0.2488 -4.7745 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7517 -1.7714 1.2057 34 1 1.6054 -0.2616 2.1369 35 1 3.7326 -1.6554 3.0290 36 1 7.1806 -0.9073 3.9815 37 1 5.4867 -0.9383 4.5766 38 1 5.2332 -3.2824 4.0883 39 1 6.9361 -3.2206 4.6375 40 1 8.0908 -3.8402 -0.8390 41 1 7.2444 -1.8449 1.1080 42 1 5.6452 -2.5882 0.8361 43 1 2.2492 -1.6317 -1.1525 44 1 1.9974 -1.5684 -3.8263 45 1 4.5837 -0.6306 -2.5894 46 1 4.0914 -2.2815 -3.0812 47 1 4.5381 -1.8394 -5.4094 48 1 5.8656 -0.9392 -4.6044 49 1 4.2459 0.3783 -6.3103 50 1 4.6875 1.1554 -4.7575 51 1 2.0820 -0.1172 -5.5895 52 1 2.3695 1.2369 -4.4607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267736004.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:38 Heat of formation + Delta-G solvation = -92.616954 kcal Electronic energy + Delta-G solvation = -30919.310403 eV Core-core repulsion = 26917.362113 eV Total energy + Delta-G solvation = -4001.948291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.41622 -40.70237 -38.97991 -38.11400 -36.59844 -35.35318 -33.77583 -32.78799 -30.88236 -29.92918 -29.56375 -29.37930 -28.42911 -26.36611 -23.98534 -22.52540 -21.99193 -21.66581 -21.43438 -21.21861 -20.47902 -18.87588 -18.46520 -18.02237 -17.46083 -17.17085 -16.71504 -16.55408 -15.95430 -15.90166 -15.68850 -15.45562 -15.05204 -14.87527 -14.57117 -14.29685 -14.27768 -13.98461 -13.80874 -13.37726 -13.32604 -13.06267 -12.86847 -12.84876 -12.72854 -12.67337 -12.26970 -12.17890 -12.13463 -12.06663 -12.00510 -11.95337 -11.90849 -11.88664 -11.73200 -11.70611 -11.44838 -10.81367 -10.70895 -10.69809 -10.02351 -9.92466 -8.87645 -7.80748 -5.20665 1.45340 1.46197 1.55775 1.68855 1.78768 2.29999 2.30585 2.50297 3.34871 3.50868 3.61828 3.64189 3.69769 3.77798 3.85621 3.89641 4.11514 4.23032 4.25965 4.31326 4.41424 4.44807 4.49490 4.54180 4.63148 4.64141 4.66528 4.70185 4.74180 4.78560 4.84687 4.92438 5.00910 5.01965 5.06489 5.08695 5.18357 5.19664 5.21466 5.32436 5.34606 5.40979 5.41712 5.51177 5.62979 5.72401 5.80334 6.20894 6.56251 6.72140 7.09399 7.30618 7.44121 7.79534 8.43290 9.25711 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009332 B = 0.003899 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.807509 B = 7179.006973 C = 9362.810643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.154 3.846 3 H 0.057 0.943 4 C -0.137 4.137 5 C 0.499 3.501 6 O -0.579 6.579 7 N -0.703 5.703 8 C 0.129 3.871 9 H 0.070 0.930 10 C -0.120 4.120 11 C 0.125 3.875 12 N -0.625 5.625 13 C -0.241 4.241 14 H 0.085 0.915 15 C -0.066 4.066 16 N -0.948 5.948 17 Si 0.973 3.027 18 H -0.289 1.289 19 H -0.265 1.265 20 H -0.297 1.297 21 C 0.188 3.812 22 N -0.708 5.708 23 C 0.521 3.479 24 O -0.585 6.585 25 C -0.109 4.109 26 C -0.111 4.111 27 C -0.121 4.121 28 C -0.121 4.121 29 C -0.114 4.114 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.412 0.588 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.243 0.757 41 H 0.015 0.985 42 H -0.008 1.008 43 H 0.404 0.596 44 H 0.123 0.877 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.046 0.954 51 H 0.091 0.909 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 4.336 0.705 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 H 0.075 0.925 4 C -0.176 4.176 5 C 0.287 3.713 6 O -0.459 6.459 7 N -0.355 5.355 8 C 0.023 3.977 9 H 0.089 0.911 10 C -0.158 4.158 11 C 0.001 3.999 12 N -0.352 5.352 13 C -0.370 4.370 14 H 0.103 0.897 15 C -0.259 4.259 16 N -0.597 5.597 17 Si 0.801 3.199 18 H -0.216 1.216 19 H -0.189 1.189 20 H -0.224 1.224 21 C 0.061 3.939 22 N -0.358 5.358 23 C 0.308 3.692 24 O -0.466 6.466 25 C -0.130 4.130 26 C -0.150 4.150 27 C -0.158 4.158 28 C -0.158 4.158 29 C -0.152 4.152 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.033 0.967 42 H 0.010 0.990 43 H 0.239 0.761 44 H 0.141 0.859 45 H 0.055 0.945 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.107 0.893 50 H 0.064 0.936 51 H 0.109 0.891 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.123 5.491 -0.052 17.032 hybrid contribution 1.035 -1.321 -0.267 1.700 sum -15.088 4.170 -0.319 15.656 Atomic orbital electron populations 1.22091 0.92482 1.03460 1.02833 1.20722 0.94924 0.96311 0.83170 0.92460 1.22079 0.89537 1.05299 1.00718 1.21372 0.91510 0.77735 0.80730 1.90756 1.71523 1.44133 1.39455 1.45823 1.06479 1.56164 1.27001 1.21908 0.80605 0.97744 0.97485 0.91139 1.23008 1.02302 0.96144 0.94358 1.21891 0.97762 0.93483 0.86778 1.44791 1.68644 1.17579 1.04149 1.19463 1.29337 0.92446 0.95738 0.89692 1.25639 1.02146 1.01143 0.96954 1.70223 1.52995 1.31708 1.04814 0.85145 0.77855 0.79870 0.76982 1.21608 1.18938 1.22364 1.21162 0.95363 0.87059 0.90305 1.45911 1.66418 1.14006 1.09433 1.20879 0.75788 0.86779 0.85728 1.90594 1.52558 1.17673 1.85772 1.22003 0.98054 0.99927 0.92989 1.22244 0.93577 1.00823 0.98307 1.22498 0.99353 0.98383 0.95603 1.22354 0.95093 0.96888 1.01515 1.22143 0.97515 0.99449 0.96118 0.90364 0.89225 0.93924 0.85764 0.83654 0.75079 0.90483 0.86878 0.94166 0.93560 0.94732 0.96686 0.98966 0.76132 0.85928 0.94513 0.90879 0.89209 0.92356 0.89313 0.93554 0.89083 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.48 71.98 0.68 -1.82 16 2 C 0.15 3.57 2.13 44.99 0.10 3.66 16 3 H 0.06 1.78 7.39 -2.38 -0.02 1.76 16 4 C -0.14 -2.47 5.24 29.85 0.16 -2.31 16 5 C 0.50 14.89 7.69 87.66 0.67 15.56 16 6 O -0.58 -23.82 15.08 -3.03 -0.05 -23.87 16 7 N -0.70 -19.90 5.12 -436.91 -2.24 -22.13 16 8 C 0.13 4.70 3.24 46.18 0.15 4.85 16 9 H 0.07 2.81 7.69 -2.39 -0.02 2.79 16 10 C -0.12 -3.53 6.66 32.06 0.21 -3.32 16 11 C 0.13 4.50 7.22 86.93 0.63 5.13 16 12 N -0.62 -30.89 3.39 -691.56 -2.35 -33.24 16 13 C -0.24 -13.21 10.26 84.03 0.86 -12.34 16 14 H 0.09 4.40 7.84 -2.91 -0.02 4.38 16 15 C -0.07 -3.73 5.45 84.86 0.46 -3.27 16 16 N -0.95 -58.16 10.45 21.65 0.23 -57.93 16 17 Si 0.97 45.50 29.56 68.60 2.03 47.53 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 21 C 0.19 9.36 5.19 86.73 0.45 9.81 16 22 N -0.71 -18.73 4.16 -442.54 -1.84 -20.57 16 23 C 0.52 16.13 6.96 87.66 0.61 16.74 16 24 O -0.59 -22.23 14.87 -3.06 -0.05 -22.27 16 25 C -0.11 -2.79 3.30 -10.82 -0.04 -2.82 16 26 C -0.11 -3.30 6.31 31.67 0.20 -3.10 16 27 C -0.12 -3.08 6.91 31.88 0.22 -2.86 16 28 C -0.12 -2.91 6.83 31.68 0.22 -2.70 16 29 C -0.11 -2.80 6.40 31.33 0.20 -2.59 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.41 8.60 8.62 -92.71 -0.80 7.80 16 36 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.02 0.90 6.88 -2.39 -0.02 0.88 16 42 H -0.01 -0.45 7.88 -2.38 -0.02 -0.47 16 43 H 0.40 9.65 8.60 -92.71 -0.80 8.85 16 44 H 0.12 2.39 8.14 -2.38 -0.02 2.37 16 45 H 0.04 1.39 7.85 -2.39 -0.02 1.37 16 46 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.06 1.92 6.39 -2.39 -0.02 1.90 16 Total: -1.00 -82.33 410.97 0.84 -81.49 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.69 Total: 32.37 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 5.79 Total: 18.62 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -6.20 Total: -133.87 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.09 Total: -46.14 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -82.33 0.84 -81.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267736004.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.125 kcal (2) G-P(sol) polarization free energy of solvation -82.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds