Wall clock time and date at job start Tue Mar 31 2020 20:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47415 * 2 1 4 4 C 1.50699 * 109.47518 * 120.00711 * 2 1 3 5 5 O 1.21286 * 119.99920 * 23.39972 * 4 2 1 6 6 N 1.34776 * 120.00162 * 203.13102 * 4 2 1 7 7 C 1.46921 * 120.63174 * 4.51175 * 6 4 2 8 8 C 1.52758 * 109.01161 * 233.58815 * 7 6 4 9 9 C 1.53042 * 109.38625 * 305.58792 * 8 7 6 10 10 C 1.52999 * 109.46288 * 181.25984 * 9 8 7 11 11 N 1.46499 * 109.47131 * 64.93232 * 10 9 8 12 12 C 1.46494 * 119.99806 * 89.99777 * 11 10 9 13 13 C 1.36934 * 119.99868 * 270.00164 * 11 10 9 14 14 H 1.08008 * 120.00438 * 23.52775 * 13 11 10 15 15 C 1.38810 * 119.99815 * 203.53538 * 13 11 10 16 16 N 1.31621 * 120.00229 * 12.00899 * 15 13 11 17 17 Si 1.86798 * 120.00036 * 192.01529 * 15 13 11 18 18 H 1.48506 * 109.47356 * 59.99457 * 17 15 13 19 19 H 1.48504 * 109.47428 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47148 * 299.99533 * 17 15 13 21 21 C 1.53042 * 109.53488 * 61.23692 * 9 8 7 22 22 C 1.46924 * 120.62948 * 184.79945 * 6 4 2 23 23 C 1.53009 * 109.46790 * 240.00474 * 2 1 3 24 24 H 1.09001 * 110.21659 * 184.52481 * 23 2 1 25 25 C 1.54470 * 110.24665 * 62.50038 * 23 2 1 26 26 C 1.54624 * 101.77004 * 266.41712 * 25 23 2 27 27 C 1.51282 * 104.19180 * 335.20445 * 26 25 23 28 28 O 1.21286 * 124.94322 * 196.23476 * 27 26 25 29 29 N 1.34419 * 110.11812 * 16.25067 * 27 26 25 30 30 H 1.09009 * 109.46630 * 292.46675 * 1 2 3 31 31 H 1.08988 * 109.47418 * 52.46582 * 1 2 3 32 32 H 1.08997 * 109.47454 * 172.47556 * 1 2 3 33 33 H 1.09001 * 109.58701 * 353.42042 * 7 6 4 34 34 H 1.08998 * 109.58841 * 113.84507 * 7 6 4 35 35 H 1.09003 * 109.56779 * 185.55282 * 8 7 6 36 36 H 1.09001 * 109.38580 * 65.51582 * 8 7 6 37 37 H 1.09002 * 109.44668 * 301.22747 * 9 8 7 38 38 H 1.08997 * 109.46729 * 184.93129 * 10 9 8 39 39 H 1.08997 * 109.47062 * 304.93027 * 10 9 8 40 40 H 1.09001 * 109.46823 * 88.30713 * 12 11 10 41 41 H 1.09007 * 109.47051 * 208.29787 * 12 11 10 42 42 H 1.08994 * 109.47474 * 328.30318 * 12 11 10 43 43 H 0.96997 * 120.00207 * 180.02562 * 16 15 13 44 44 H 1.09003 * 109.49898 * 178.68785 * 21 9 8 45 45 H 1.08999 * 109.52331 * 58.60564 * 21 9 8 46 46 H 1.09002 * 109.58511 * 246.14688 * 22 6 4 47 47 H 1.09001 * 109.58926 * 6.43498 * 22 6 4 48 48 H 1.09004 * 110.97334 * 24.53661 * 25 23 2 49 49 H 1.09000 * 110.96888 * 148.29309 * 25 23 2 50 50 H 1.08995 * 110.49185 * 216.52824 * 26 25 23 51 51 H 1.08998 * 110.59951 * 93.92931 * 26 25 23 52 52 H 0.97000 * 124.34983 * 180.39260 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 1.3258 -1.5184 1.7951 6 7 3.2690 -0.4523 1.6999 7 6 4.1015 0.5895 1.0832 8 6 5.4524 -0.0137 0.7025 9 6 6.0793 -0.6730 1.9331 10 6 7.4465 -1.2503 1.5612 11 7 8.3550 -0.1596 1.1990 12 6 9.1782 0.4803 2.2281 13 6 8.4346 0.2618 -0.1015 14 1 7.6086 0.0908 -0.7761 15 6 9.5769 0.9086 -0.5528 16 7 10.6671 0.9102 0.1847 17 14 9.5668 1.7770 -2.2066 18 1 8.5306 2.8408 -2.2009 19 1 10.8987 2.3852 -2.4546 20 1 9.2628 0.7957 -3.2790 21 6 5.1689 -1.7982 2.4305 22 6 3.8126 -1.2114 2.8343 23 6 2.0399 -0.7212 -1.2494 24 1 3.1268 -0.7987 -1.2223 25 6 1.5872 0.0287 -2.5217 26 6 0.2751 -0.7101 -2.8731 27 6 0.4402 -2.0774 -2.2471 28 8 -0.2303 -3.0511 -2.5181 29 7 1.4378 -2.0561 -1.3465 30 1 -0.3633 0.3928 0.9498 31 1 -0.3633 0.6260 -0.8148 32 1 -0.3634 -1.0188 -0.1346 33 1 3.6078 0.9700 0.1890 34 1 4.2545 1.4026 1.7927 35 1 6.1124 0.7721 0.3349 36 1 5.3078 -0.7616 -0.0771 37 1 6.2011 0.0706 2.7208 38 1 7.8544 -1.7953 2.4125 39 1 7.3367 -1.9280 0.7147 40 1 10.1189 -0.0610 2.3293 41 1 9.3818 1.5120 1.9409 42 1 8.6466 0.4661 3.1795 43 1 11.4652 1.3625 -0.1305 44 1 5.6270 -2.2826 3.2928 45 1 5.0264 -2.5299 1.6352 46 1 3.9416 -0.5481 3.6896 47 1 3.1271 -2.0172 3.0969 48 1 1.3973 1.0805 -2.3079 49 1 2.3214 -0.0791 -3.3201 50 1 0.1635 -0.7964 -3.9539 51 1 -0.5828 -0.1943 -2.4419 52 1 1.7229 -2.8242 -0.8273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267746021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:04 Heat of formation + Delta-G solvation = -53.622136 kcal Electronic energy + Delta-G solvation = -31353.585845 eV Core-core repulsion = 27353.328496 eV Total energy + Delta-G solvation = -4000.257348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32951 -39.86808 -37.87929 -36.92645 -35.52838 -33.29270 -32.56283 -31.58055 -30.90305 -30.65953 -27.90055 -27.14446 -25.93334 -24.64742 -23.36437 -22.89382 -21.63922 -20.95190 -20.61493 -19.82136 -18.72644 -17.65736 -17.37905 -16.80004 -16.58223 -15.80201 -15.34091 -15.07991 -15.00815 -14.41979 -14.28309 -14.07506 -13.85183 -13.72590 -13.58651 -13.42935 -13.16695 -13.05253 -12.86474 -12.74059 -12.41336 -12.24465 -12.03960 -11.97326 -11.65537 -11.50505 -11.27672 -11.17526 -11.08171 -10.91725 -10.87725 -10.53928 -10.46226 -10.33683 -10.08991 -10.05576 -9.89091 -9.67364 -9.65172 -9.33868 -8.64555 -8.53596 -6.75010 -5.78335 -3.23317 2.38677 2.52200 2.92782 3.13883 3.31920 3.37114 3.39373 3.96659 4.10491 4.34205 4.42190 4.43754 4.63699 4.67879 4.79709 4.92823 5.04040 5.05490 5.16942 5.22450 5.25592 5.36178 5.39241 5.40348 5.41696 5.51202 5.56245 5.59720 5.63955 5.71938 5.77063 5.86656 5.97719 6.05158 6.08654 6.20608 6.38619 6.43705 6.50637 6.58385 6.60764 6.76759 6.83674 6.88480 6.95186 7.35578 7.37749 7.65573 7.75072 8.06180 8.10605 8.36716 9.19773 9.84050 10.34500 11.28057 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.003387 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.970358 B = 8265.602420 C = 9673.668459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 H 0.108 0.892 4 C 0.516 3.484 5 O -0.543 6.543 6 N -0.606 5.606 7 C 0.101 3.899 8 C -0.125 4.125 9 C -0.105 4.105 10 C 0.156 3.844 11 N -0.601 5.601 12 C 0.164 3.836 13 C -0.254 4.254 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.900 3.100 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.284 1.284 21 C -0.127 4.127 22 C 0.113 3.887 23 C 0.139 3.861 24 H 0.099 0.901 25 C -0.126 4.126 26 C -0.161 4.161 27 C 0.522 3.478 28 O -0.538 6.538 29 N -0.718 5.718 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.018 0.982 41 H 0.052 0.948 42 H -0.007 1.007 43 H 0.253 0.747 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.108 0.892 52 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.985 1.930 -0.314 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 H 0.126 0.874 4 C 0.304 3.696 5 O -0.420 6.420 6 N -0.339 5.339 7 C -0.022 4.022 8 C -0.162 4.162 9 C -0.126 4.126 10 C 0.029 3.971 11 N -0.324 5.324 12 C 0.019 3.981 13 C -0.383 4.383 14 H 0.088 0.912 15 C -0.197 4.197 16 N -0.553 5.553 17 Si 0.730 3.270 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.210 1.210 21 C -0.166 4.166 22 C -0.009 4.009 23 C 0.032 3.968 24 H 0.117 0.883 25 C -0.163 4.163 26 C -0.201 4.201 27 C 0.309 3.691 28 O -0.415 6.415 29 N -0.373 5.373 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.011 0.989 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.120 0.880 51 H 0.126 0.874 52 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.539 1.166 -0.254 17.579 hybrid contribution 0.529 0.322 -0.491 0.791 sum -17.010 1.488 -0.745 17.091 Atomic orbital electron populations 1.21768 0.92345 1.03114 1.02251 1.21852 0.98756 1.00912 0.93296 0.87440 1.20489 0.81131 0.82688 0.85286 1.90685 1.55891 1.35693 1.59776 1.48232 1.14830 1.37349 1.33460 1.21931 0.92474 0.89879 0.97883 1.21948 0.94289 1.01871 0.98132 1.21802 0.96992 0.96706 0.97143 1.20740 0.88510 0.90208 0.97670 1.43863 1.46412 1.36840 1.05255 1.20742 0.92236 0.98134 0.86975 1.19152 0.98463 1.33389 0.87337 0.91208 1.25048 0.95032 1.01876 0.97722 1.70053 1.01237 1.46015 1.37949 0.86409 0.76807 0.79712 0.84029 1.21044 1.21689 1.20994 1.21945 0.94522 0.98771 1.01377 1.21603 0.95472 0.96019 0.87804 1.21602 0.98793 0.82600 0.93785 0.88289 1.22662 0.96968 1.00228 0.96493 1.22493 0.99866 0.94475 1.03243 1.20858 0.78943 0.90266 0.79081 1.90759 1.47771 1.38532 1.64460 1.46244 1.36378 1.12277 1.42416 0.92034 0.91617 0.91511 0.90161 0.91320 0.87867 0.92561 0.91802 0.94808 0.93783 0.96367 0.92917 0.98885 0.93698 0.91130 0.91988 0.91829 0.89648 0.88614 0.89080 0.88032 0.87435 0.74873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 7.16 37.16 0.27 -0.93 16 2 C -0.13 -1.08 1.63 -91.77 -0.15 -1.22 16 3 H 0.11 0.70 6.38 -51.93 -0.33 0.37 16 4 C 0.52 6.17 6.60 -10.99 -0.07 6.09 16 5 O -0.54 -8.37 15.65 5.55 0.09 -8.28 16 6 N -0.61 -6.97 2.98 -173.03 -0.52 -7.48 16 7 C 0.10 1.07 6.09 -3.94 -0.02 1.05 16 8 C -0.12 -1.71 4.60 -26.83 -0.12 -1.84 16 9 C -0.10 -1.55 2.36 -90.58 -0.21 -1.76 16 10 C 0.16 2.90 5.18 -4.04 -0.02 2.88 16 11 N -0.60 -13.81 2.80 -181.13 -0.51 -14.32 16 12 C 0.16 3.82 8.98 59.84 0.54 4.36 16 13 C -0.25 -6.31 8.19 -15.06 -0.12 -6.43 16 14 H 0.07 1.65 6.64 -52.48 -0.35 1.30 16 15 C 0.00 0.04 5.07 -17.43 -0.09 -0.05 16 16 N -0.91 -25.40 10.73 55.49 0.60 -24.81 16 17 Si 0.90 20.43 29.57 -169.99 -5.03 15.41 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.13 -1.58 5.36 -26.61 -0.14 -1.73 16 22 C 0.11 1.35 6.42 -3.71 -0.02 1.33 16 23 C 0.14 1.12 3.23 -67.01 -0.22 0.91 16 24 H 0.10 0.82 7.79 -51.93 -0.40 0.42 16 25 C -0.13 -0.73 6.26 -25.11 -0.16 -0.89 16 26 C -0.16 -1.17 6.06 -26.74 -0.16 -1.33 16 27 C 0.52 6.07 7.13 -10.86 -0.08 5.99 16 28 O -0.54 -8.67 18.03 5.55 0.10 -8.57 16 29 N -0.72 -7.49 5.05 -52.76 -0.27 -7.76 16 30 H 0.06 0.58 8.13 -51.92 -0.42 0.15 16 31 H 0.06 0.40 5.99 -51.94 -0.31 0.09 16 32 H 0.07 0.74 6.34 -51.93 -0.33 0.41 16 33 H 0.08 0.66 5.18 -51.93 -0.27 0.39 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.72 5.93 -51.93 -0.31 1.41 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 39 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 40 H 0.02 0.46 7.72 -51.93 -0.40 0.06 16 41 H 0.05 1.33 6.88 -51.93 -0.36 0.97 16 42 H -0.01 -0.15 8.08 -51.93 -0.42 -0.57 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.09 7.03 -51.93 -0.37 0.73 16 48 H 0.10 0.37 7.82 -51.93 -0.41 -0.04 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.11 0.65 6.24 -51.93 -0.32 0.33 16 52 H 0.41 4.67 8.96 -40.82 -0.37 4.30 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -32.38 391.10 -9.14 -41.52 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -8.72 Total: 1.95 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.79 Total: 6.44 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.69 Total: -54.36 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.19 Total: -16.86 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.38 -9.14 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267746021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.097 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds