Wall clock time and date at job start Tue Mar 31 2020 20:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 C 1.53000 * 109.46587 * 239.99917 * 2 1 3 5 5 C 1.53003 * 109.46768 * 175.00314 * 4 2 1 6 6 N 1.46896 * 109.47286 * 179.97438 * 5 4 2 7 7 C 1.46898 * 111.00277 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47364 * 180.02562 * 7 6 5 9 9 O 1.21301 * 120.00371 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00463 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00648 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99857 * 0.02562 * 11 10 8 13 13 C 1.38942 * 120.00617 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00564 * 179.97438 * 13 11 10 15 15 Si 1.86809 * 119.99703 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47142 * 90.00028 * 15 13 11 17 17 H 1.48503 * 109.46990 * 210.00086 * 15 13 11 18 18 H 1.48491 * 109.47017 * 329.99771 * 15 13 11 19 19 N 1.46504 * 109.46808 * 120.00262 * 2 1 3 20 20 C 1.34776 * 119.99656 * 274.99692 * 19 2 1 21 21 O 1.21277 * 120.00352 * 359.97438 * 20 19 2 22 22 C 1.50705 * 119.99606 * 180.02562 * 20 19 2 23 23 H 1.08996 * 115.55786 * 11.70326 * 22 20 19 24 24 C 1.53090 * 117.50547 * 157.42161 * 22 20 19 25 25 C 1.52556 * 117.50604 * 225.91737 * 22 20 19 26 26 C 1.53871 * 120.81938 * 142.33926 * 25 22 20 27 27 C 1.54999 * 104.05940 * 192.35063 * 26 25 22 28 28 C 1.54924 * 102.81587 * 37.56948 * 27 26 25 29 29 C 1.53477 * 121.09389 * 2.96595 * 25 22 20 30 30 H 1.09007 * 109.47274 * 300.00002 * 1 2 3 31 31 H 1.09000 * 109.47319 * 59.99842 * 1 2 3 32 32 H 1.09000 * 109.47800 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47051 * 55.00557 * 4 2 1 34 34 H 1.09000 * 109.47366 * 294.99946 * 4 2 1 35 35 H 1.09000 * 109.46877 * 299.99932 * 5 4 2 36 36 H 1.09005 * 109.47294 * 59.99765 * 5 4 2 37 37 H 1.00899 * 111.00482 * 303.95805 * 6 5 4 38 38 H 1.09000 * 109.47280 * 300.00620 * 7 6 5 39 39 H 1.09001 * 109.46873 * 60.00474 * 7 6 5 40 40 H 0.97001 * 119.99544 * 0.02562 * 10 8 7 41 41 H 0.97000 * 120.00398 * 179.97438 * 14 13 11 42 42 H 0.97003 * 120.00017 * 94.99787 * 19 2 1 43 43 H 1.09009 * 117.50803 * 214.91378 * 24 22 20 44 44 H 1.08997 * 117.51488 * 359.96106 * 24 22 20 45 45 H 1.08997 * 110.51393 * 310.99160 * 26 25 22 46 46 H 1.09005 * 110.51230 * 73.70976 * 26 25 22 47 47 H 1.09001 * 110.74427 * 279.23655 * 27 26 25 48 48 H 1.09001 * 110.73869 * 155.90232 * 27 26 25 49 49 H 1.08999 * 110.47897 * 203.59085 * 28 27 26 50 50 H 1.09004 * 110.59294 * 81.02655 * 28 27 26 51 51 H 1.09001 * 110.07146 * 263.31972 * 29 25 22 52 52 H 1.09004 * 110.07154 * 24.84811 * 29 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6134 -1.3137 6 7 4.0544 -1.3064 -2.5128 7 6 5.5179 -1.2230 -2.6083 8 6 5.9823 -1.9428 -3.8481 9 8 5.1736 -2.4729 -4.5805 10 7 7.2962 -1.9978 -4.1433 11 6 7.7187 -2.6531 -5.2709 12 1 6.9986 -3.1251 -5.9230 13 6 9.0732 -2.7093 -5.5755 14 7 9.4782 -3.3378 -6.6561 15 14 10.3187 -1.8923 -4.4481 16 1 10.7642 -2.8632 -3.4166 17 1 11.4890 -1.4448 -5.2451 18 1 9.6928 -0.7195 -3.7864 19 7 2.0183 -0.6907 1.1962 20 6 2.1470 -0.0183 2.3571 21 8 1.8591 1.1585 2.4115 22 6 2.6498 -0.7287 3.5875 23 1 3.0733 -1.7188 3.4188 24 6 3.2721 0.1275 4.6935 25 6 1.8946 -0.4975 4.8927 26 6 1.6878 -1.6442 5.8976 27 6 0.6324 -1.0906 6.8887 28 6 -0.3138 -0.2814 5.9666 29 6 0.6298 0.3709 4.9334 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 1.6053 -0.2617 -2.1369 34 1 1.7515 -1.7715 -1.2056 35 1 3.8531 0.4368 -1.3574 36 1 3.9994 -1.0729 -0.4260 37 1 3.7450 -2.2667 -2.5273 38 1 5.8195 -0.1769 -2.6615 39 1 5.9664 -1.6861 -1.7294 40 1 7.9429 -1.5742 -3.5575 41 1 10.4238 -3.3767 -6.8689 42 1 2.2489 -1.6319 1.1526 43 1 4.1045 -0.2998 5.2528 44 1 3.3183 1.2043 4.5310 45 1 1.3078 -2.5317 5.3916 46 1 2.6190 -1.8690 6.4176 47 1 1.1005 -0.4402 7.6277 48 1 0.0948 -1.9047 7.3747 49 1 -0.8410 0.4828 6.5376 50 1 -1.0238 -0.9431 5.4704 51 1 0.8819 1.3847 5.2447 52 1 0.1556 0.3875 3.9520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268417491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:21 Heat of formation + Delta-G solvation = -65.672150 kcal Electronic energy + Delta-G solvation = -28615.582234 eV Core-core repulsion = 24614.802358 eV Total energy + Delta-G solvation = -4000.779876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.75564 -38.89339 -38.45835 -36.90679 -35.08878 -34.46087 -33.88821 -31.86443 -31.63019 -29.38544 -29.15729 -26.44083 -26.17081 -24.73898 -23.84347 -22.24584 -21.33075 -21.07480 -20.57185 -19.40221 -19.18412 -18.33727 -17.38008 -16.61591 -16.22028 -15.99022 -15.73003 -15.43804 -15.00449 -14.95017 -14.65126 -14.33326 -13.96107 -13.85739 -13.72998 -13.47169 -13.32930 -13.00485 -12.89558 -12.68479 -12.50128 -12.47527 -12.28566 -12.15272 -11.75607 -11.56053 -11.48510 -11.40356 -11.36564 -11.21045 -11.15724 -11.01834 -10.99657 -10.67479 -10.60250 -10.27906 -9.98414 -9.89289 -9.58245 -9.33468 -8.60083 -8.20881 -8.14869 -6.31941 -3.83452 2.18125 2.84875 3.02341 3.05838 3.14366 3.47273 3.73035 3.96208 4.00372 4.09614 4.17481 4.35747 4.41961 4.56576 4.70060 4.73011 4.76138 4.79446 4.82314 5.04957 5.07492 5.17949 5.20268 5.21025 5.29619 5.30726 5.32642 5.39920 5.45871 5.46144 5.49173 5.55403 5.60112 5.64024 5.69621 5.71831 5.75549 5.79531 5.86088 5.88424 5.90496 5.94820 5.97357 6.03677 6.29510 7.07140 7.24792 7.55437 7.57777 7.99459 8.13573 8.58906 8.94044 9.41548 9.81770 10.81138 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017053 B = 0.001801 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.527079 B =15542.622236 C =16591.384911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.049 3.951 8 C 0.450 3.550 9 O -0.565 6.565 10 N -0.590 5.590 11 C -0.306 4.306 12 H 0.120 0.880 13 C 0.042 3.958 14 N -0.881 5.881 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.722 5.722 20 C 0.545 3.455 21 O -0.539 6.539 22 C -0.187 4.187 23 H 0.119 0.881 24 C -0.134 4.134 25 C -0.093 4.093 26 C -0.091 4.091 27 C -0.122 4.122 28 C -0.125 4.125 29 C -0.086 4.086 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.350 0.650 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.400 0.600 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.070 0.930 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 5.790 28.523 33.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.084 4.084 8 C 0.235 3.765 9 O -0.447 6.447 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.195 1.195 19 N -0.373 5.373 20 C 0.332 3.668 21 O -0.416 6.416 22 C -0.208 4.208 23 H 0.137 0.863 24 C -0.171 4.171 25 C -0.094 4.094 26 C -0.128 4.128 27 C -0.159 4.159 28 C -0.163 4.163 29 C -0.123 4.123 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.169 0.831 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.234 0.766 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.327 6.749 27.463 33.166 hybrid contribution 1.732 -0.569 1.252 2.211 sum -15.595 6.180 28.715 33.256 Atomic orbital electron populations 1.22153 0.95074 1.02167 1.02572 1.20987 0.94033 0.97663 0.83458 0.89235 1.21881 0.95740 1.01325 0.97384 1.21964 0.94404 0.99750 0.90832 1.60035 1.09493 1.21805 1.38843 1.21695 0.88804 1.01287 0.96638 1.19716 0.82865 0.85607 0.88289 1.90565 1.52915 1.49352 1.51842 1.42210 1.05975 1.50520 1.24292 1.19435 0.93491 1.30190 1.00312 0.86276 1.25036 0.96987 0.97448 0.96670 1.69618 1.16275 1.41728 1.24480 0.86673 0.81975 0.79776 0.80985 1.19664 1.20133 1.19474 1.46090 1.67508 1.14045 1.09651 1.19578 0.77030 0.86659 0.83543 1.90690 1.50190 1.15821 1.84892 1.22344 1.07477 1.01726 0.89254 0.86342 1.23063 0.95574 0.99946 0.98513 1.21757 0.93965 0.99246 0.94425 1.21954 0.99438 0.96128 0.95310 1.22473 0.96647 0.99464 0.97366 1.22384 0.97576 0.99272 0.97029 1.21618 0.92868 0.98179 0.99641 0.92260 0.91354 0.92447 0.89045 0.91285 0.91082 0.95594 0.83109 0.89523 0.93871 0.79695 0.91605 0.76625 0.87887 0.87503 0.90943 0.91245 0.91272 0.91403 0.91539 0.91666 0.91107 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16 2 C 0.14 1.26 2.57 -67.93 -0.17 1.09 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C -0.13 -1.14 5.01 -26.73 -0.13 -1.27 16 5 C 0.06 0.67 5.57 -3.82 -0.02 0.65 16 6 N -0.67 -10.09 6.12 -115.06 -0.70 -10.80 16 7 C 0.05 0.81 6.17 -4.98 -0.03 0.77 16 8 C 0.45 10.23 7.82 -10.99 -0.09 10.14 16 9 O -0.56 -15.18 15.78 5.54 0.09 -15.10 16 10 N -0.59 -14.13 5.09 -10.97 -0.06 -14.18 16 11 C -0.31 -8.68 10.16 -14.94 -0.15 -8.83 16 12 H 0.12 3.86 7.39 -52.48 -0.39 3.48 16 13 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 15 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 19 N -0.72 -5.89 4.53 -53.80 -0.24 -6.14 16 20 C 0.55 5.38 6.82 -10.98 -0.07 5.30 16 21 O -0.54 -7.07 14.74 5.56 0.08 -6.99 16 22 C -0.19 -1.43 6.05 -91.95 -0.56 -1.98 16 23 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 24 C -0.13 -0.99 9.75 -26.91 -0.26 -1.25 16 25 C -0.09 -0.67 2.43 -154.26 -0.37 -1.05 16 26 C -0.09 -0.51 6.58 -25.22 -0.17 -0.68 16 27 C -0.12 -0.64 6.91 -24.66 -0.17 -0.81 16 28 C -0.13 -0.77 6.84 -24.99 -0.17 -0.94 16 29 C -0.09 -0.68 5.65 -25.76 -0.15 -0.83 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.27 7.75 -51.93 -0.40 -0.13 16 37 H 0.35 5.35 8.43 -39.29 -0.33 5.02 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.40 2.50 8.60 -40.82 -0.35 2.15 16 43 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.11 0.94 7.85 -51.93 -0.41 0.53 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.07 0.67 6.82 -51.93 -0.35 0.32 16 LS Contribution 418.89 15.07 6.31 6.31 Total: -1.00 -33.96 418.89 -9.94 -43.90 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -9.22 Total: 12.90 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.26 Total: 0.39 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.23 Total: -56.10 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.17 Total: -22.09 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.96 -9.94 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268417491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.767 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds