Wall clock time and date at job start Tue Mar 31 2020 20:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47082 * 2 1 4 4 C 1.53000 * 109.46587 * 239.99917 * 2 1 3 5 5 C 1.53003 * 109.46768 * 175.00314 * 4 2 1 6 6 N 1.46896 * 109.47286 * 179.97438 * 5 4 2 7 7 C 1.46898 * 111.00277 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47364 * 180.02562 * 7 6 5 9 9 O 1.21301 * 120.00371 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00463 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00648 * 179.97438 * 10 8 7 12 12 H 1.08007 * 119.99857 * 0.02562 * 11 10 8 13 13 C 1.38942 * 120.00617 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00564 * 179.97438 * 13 11 10 15 15 Si 1.86809 * 119.99703 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47142 * 90.00028 * 15 13 11 17 17 H 1.48503 * 109.46990 * 210.00086 * 15 13 11 18 18 H 1.48491 * 109.47017 * 329.99771 * 15 13 11 19 19 N 1.46504 * 109.46808 * 120.00262 * 2 1 3 20 20 C 1.34776 * 119.99656 * 274.99692 * 19 2 1 21 21 O 1.21277 * 120.00352 * 359.97438 * 20 19 2 22 22 C 1.50705 * 119.99606 * 180.02562 * 20 19 2 23 23 H 1.08996 * 115.55786 * 11.70326 * 22 20 19 24 24 C 1.53090 * 117.50547 * 157.42161 * 22 20 19 25 25 C 1.52556 * 117.50604 * 225.91737 * 22 20 19 26 26 C 1.53871 * 120.81938 * 142.33926 * 25 22 20 27 27 C 1.54999 * 104.05940 * 192.35063 * 26 25 22 28 28 C 1.54924 * 102.81587 * 37.56948 * 27 26 25 29 29 C 1.53477 * 121.09389 * 2.96595 * 25 22 20 30 30 H 1.09007 * 109.47274 * 300.00002 * 1 2 3 31 31 H 1.09000 * 109.47319 * 59.99842 * 1 2 3 32 32 H 1.09000 * 109.47800 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47051 * 55.00557 * 4 2 1 34 34 H 1.09000 * 109.47366 * 294.99946 * 4 2 1 35 35 H 1.09000 * 109.46877 * 299.99932 * 5 4 2 36 36 H 1.09005 * 109.47294 * 59.99765 * 5 4 2 37 37 H 1.00899 * 111.00482 * 303.95805 * 6 5 4 38 38 H 1.09000 * 109.47280 * 300.00620 * 7 6 5 39 39 H 1.09001 * 109.46873 * 60.00474 * 7 6 5 40 40 H 0.97001 * 119.99544 * 0.02562 * 10 8 7 41 41 H 0.97000 * 120.00398 * 179.97438 * 14 13 11 42 42 H 0.97003 * 120.00017 * 94.99787 * 19 2 1 43 43 H 1.09009 * 117.50803 * 214.91378 * 24 22 20 44 44 H 1.08997 * 117.51488 * 359.96106 * 24 22 20 45 45 H 1.08997 * 110.51393 * 310.99160 * 26 25 22 46 46 H 1.09005 * 110.51230 * 73.70976 * 26 25 22 47 47 H 1.09001 * 110.74427 * 279.23655 * 27 26 25 48 48 H 1.09001 * 110.73869 * 155.90232 * 27 26 25 49 49 H 1.08999 * 110.47897 * 203.59085 * 28 27 26 50 50 H 1.09004 * 110.59294 * 81.02655 * 28 27 26 51 51 H 1.09001 * 110.07146 * 263.31972 * 29 25 22 52 52 H 1.09004 * 110.07154 * 24.84811 * 29 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6134 -1.3137 6 7 4.0544 -1.3064 -2.5128 7 6 5.5179 -1.2230 -2.6083 8 6 5.9823 -1.9428 -3.8481 9 8 5.1736 -2.4729 -4.5805 10 7 7.2962 -1.9978 -4.1433 11 6 7.7187 -2.6531 -5.2709 12 1 6.9986 -3.1251 -5.9230 13 6 9.0732 -2.7093 -5.5755 14 7 9.4782 -3.3378 -6.6561 15 14 10.3187 -1.8923 -4.4481 16 1 10.7642 -2.8632 -3.4166 17 1 11.4890 -1.4448 -5.2451 18 1 9.6928 -0.7195 -3.7864 19 7 2.0183 -0.6907 1.1962 20 6 2.1470 -0.0183 2.3571 21 8 1.8591 1.1585 2.4115 22 6 2.6498 -0.7287 3.5875 23 1 3.0733 -1.7188 3.4188 24 6 3.2721 0.1275 4.6935 25 6 1.8946 -0.4975 4.8927 26 6 1.6878 -1.6442 5.8976 27 6 0.6324 -1.0906 6.8887 28 6 -0.3138 -0.2814 5.9666 29 6 0.6298 0.3709 4.9334 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 1.6053 -0.2617 -2.1369 34 1 1.7515 -1.7715 -1.2056 35 1 3.8531 0.4368 -1.3574 36 1 3.9994 -1.0729 -0.4260 37 1 3.7450 -2.2667 -2.5273 38 1 5.8195 -0.1769 -2.6615 39 1 5.9664 -1.6861 -1.7294 40 1 7.9429 -1.5742 -3.5575 41 1 10.4238 -3.3767 -6.8689 42 1 2.2489 -1.6319 1.1526 43 1 4.1045 -0.2998 5.2528 44 1 3.3183 1.2043 4.5310 45 1 1.3078 -2.5317 5.3916 46 1 2.6190 -1.8690 6.4176 47 1 1.1005 -0.4402 7.6277 48 1 0.0948 -1.9047 7.3747 49 1 -0.8410 0.4828 6.5376 50 1 -1.0238 -0.9431 5.4704 51 1 0.8819 1.3847 5.2447 52 1 0.1556 0.3875 3.9520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268417491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:20 Heat of formation + Delta-G solvation = -90.244060 kcal Electronic energy + Delta-G solvation = -28616.647752 eV Core-core repulsion = 24614.802358 eV Total energy + Delta-G solvation = -4001.845394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43492 -40.32241 -39.46251 -37.83534 -36.30839 -35.73485 -35.02497 -33.76003 -32.64189 -30.40437 -29.65500 -27.90188 -26.73937 -25.74119 -25.13924 -23.21329 -21.95598 -21.72858 -21.27914 -21.21310 -20.27308 -19.76216 -18.07463 -17.81876 -17.40128 -17.02687 -16.70438 -16.47476 -16.12127 -15.80220 -15.74331 -15.39300 -15.27018 -14.94104 -14.91791 -14.47988 -14.26438 -14.04892 -13.89232 -13.86478 -13.53963 -13.41260 -13.21644 -13.08406 -12.96865 -12.82849 -12.42622 -12.28486 -12.08168 -12.03463 -11.98671 -11.96112 -11.85550 -11.80326 -11.52053 -11.44709 -11.23658 -10.94943 -10.56644 -10.45898 -10.25799 -10.06622 -9.32991 -8.41945 -6.03042 1.30244 1.34770 1.44159 1.46876 1.94187 2.17687 2.22349 2.69131 2.87937 3.14405 3.35257 3.45065 3.65619 3.80908 3.85771 3.89833 3.99975 4.05836 4.15636 4.19869 4.26276 4.29695 4.41063 4.42117 4.49661 4.54874 4.59527 4.67310 4.71896 4.77176 4.80453 4.85176 4.90247 4.94084 5.01323 5.06789 5.09733 5.10715 5.18078 5.21057 5.26363 5.29095 5.37746 5.46970 5.51807 5.57764 5.89499 6.03284 6.40392 6.58705 6.59253 6.87035 7.29202 7.38642 7.94892 8.75577 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017053 B = 0.001801 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.527079 B =15542.622236 C =16591.384911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.065 3.935 6 N -0.687 5.687 7 C 0.062 3.938 8 C 0.448 3.552 9 O -0.614 6.614 10 N -0.591 5.591 11 C -0.330 4.330 12 H 0.056 0.944 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.233 1.233 19 N -0.712 5.712 20 C 0.540 3.460 21 O -0.578 6.578 22 C -0.188 4.188 23 H 0.143 0.857 24 C -0.135 4.135 25 C -0.094 4.094 26 C -0.087 4.087 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.087 4.087 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.347 0.653 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.412 0.588 43 H 0.124 0.876 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.066 0.934 51 H 0.055 0.945 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 5.998 31.925 36.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.064 4.064 6 N -0.320 5.320 7 C -0.070 4.070 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.232 5.232 11 C -0.459 4.459 12 H 0.074 0.926 13 C -0.213 4.213 14 N -0.574 5.574 15 Si 0.784 3.216 16 H -0.180 1.180 17 H -0.200 1.200 18 H -0.157 1.157 19 N -0.363 5.363 20 C 0.328 3.672 21 O -0.459 6.459 22 C -0.209 4.209 23 H 0.161 0.839 24 C -0.173 4.173 25 C -0.094 4.094 26 C -0.124 4.124 27 C -0.157 4.157 28 C -0.161 4.161 29 C -0.125 4.125 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.166 0.834 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.225 0.775 41 H 0.089 0.911 42 H 0.248 0.752 43 H 0.143 0.857 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.085 0.915 51 H 0.074 0.926 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.392 6.947 30.885 35.649 hybrid contribution 1.293 -0.648 0.102 1.449 sum -15.099 6.300 30.987 35.041 Atomic orbital electron populations 1.22096 0.94541 1.02719 1.02085 1.20835 0.94357 0.96697 0.83625 0.91180 1.21767 0.94417 1.02018 0.97057 1.21990 0.95459 0.99119 0.89839 1.60022 1.08671 1.21995 1.41306 1.21609 0.89929 1.01569 0.93917 1.20982 0.81934 0.84124 0.89374 1.90543 1.54158 1.51110 1.53990 1.42038 1.07050 1.50727 1.23422 1.19017 0.93199 1.31964 1.01761 0.92620 1.26110 0.99093 0.97599 0.98506 1.69800 1.17296 1.43286 1.26997 0.85370 0.77883 0.79782 0.78527 1.17952 1.20041 1.15651 1.46013 1.66781 1.14537 1.09009 1.20018 0.76446 0.86302 0.84449 1.90675 1.51972 1.17677 1.85539 1.22423 1.07747 1.02497 0.88242 0.83896 1.23089 0.96479 0.98943 0.98747 1.21839 0.93310 0.99667 0.94627 1.21977 1.00128 0.95457 0.94838 1.22486 0.96394 0.99680 0.97147 1.22381 0.97491 0.99458 0.96782 1.21581 0.93908 0.98011 0.98956 0.93841 0.90765 0.91325 0.89697 0.90022 0.91396 0.93901 0.83423 0.87412 0.90439 0.77497 0.91120 0.75174 0.85740 0.89581 0.90308 0.89984 0.91093 0.90120 0.91238 0.91501 0.92579 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.15 2.47 2.57 44.99 0.12 2.59 16 3 H 0.07 1.47 7.58 -2.39 -0.02 1.45 16 4 C -0.11 -1.86 5.01 30.60 0.15 -1.71 16 5 C 0.06 1.27 5.57 86.31 0.48 1.75 16 6 N -0.69 -19.26 6.12 -517.94 -3.17 -22.43 16 7 C 0.06 1.87 6.17 85.56 0.53 2.40 16 8 C 0.45 20.12 7.82 87.65 0.69 20.81 16 9 O -0.61 -33.86 15.78 -3.09 -0.05 -33.91 16 10 N -0.59 -27.81 5.09 -306.99 -1.56 -29.38 16 11 C -0.33 -19.36 10.16 84.04 0.85 -18.51 16 12 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 13 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 14 N -0.93 -56.18 13.96 21.66 0.30 -55.88 16 15 Si 0.96 38.63 27.74 68.60 1.90 40.53 16 16 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 17 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 18 H -0.23 -7.91 6.52 99.48 0.65 -7.27 16 19 N -0.71 -10.42 4.53 -442.52 -2.00 -12.42 16 20 C 0.54 10.19 6.82 87.66 0.60 10.79 16 21 O -0.58 -15.49 14.74 -3.02 -0.04 -15.53 16 22 C -0.19 -2.53 6.05 -11.66 -0.07 -2.60 16 23 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 24 C -0.14 -1.82 9.75 30.48 0.30 -1.52 16 25 C -0.09 -1.22 2.43 -52.02 -0.13 -1.35 16 26 C -0.09 -0.75 6.58 31.57 0.21 -0.54 16 27 C -0.12 -1.01 6.91 31.94 0.22 -0.79 16 28 C -0.12 -1.41 6.84 31.72 0.22 -1.19 16 29 C -0.09 -1.40 5.65 31.22 0.18 -1.22 16 30 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 0.72 7.75 -2.38 -0.02 0.71 16 37 H 0.35 10.06 8.43 -89.69 -0.76 9.30 16 38 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.39 15.16 5.76 -92.71 -0.53 14.63 16 41 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.41 4.02 8.60 -92.71 -0.80 3.23 16 43 H 0.12 1.10 8.14 -2.38 -0.02 1.09 16 44 H 0.09 1.53 7.85 -2.39 -0.02 1.51 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.08 0.53 8.11 -2.38 -0.02 0.51 16 47 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.05 0.95 6.82 -2.38 -0.02 0.93 16 Total: -1.00 -79.75 418.89 -0.36 -80.11 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -1.22 Total: 42.07 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.49 Total: 6.84 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -6.44 Total: -120.11 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -0.09 Total: -49.44 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.90 Total: 40.53 kcal Total: -79.75 -0.36 -80.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268417491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.134 kcal (2) G-P(sol) polarization free energy of solvation -79.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds