Wall clock time and date at job start Tue Mar 31 2020 20:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47764 * 2 1 4 4 C 1.53005 * 109.46895 * 120.00571 * 2 1 3 5 5 N 1.46899 * 109.47217 * 176.13723 * 4 2 1 6 6 C 1.46901 * 111.00155 * 199.32920 * 5 4 2 7 7 C 1.46901 * 111.00236 * 75.37127 * 5 4 2 8 8 C 1.50698 * 109.47056 * 190.00382 * 7 5 4 9 9 O 1.21294 * 119.99894 * 359.97438 * 8 7 5 10 10 N 1.34775 * 119.99938 * 180.02562 * 8 7 5 11 11 C 1.37096 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00404 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99718 * 179.97438 * 11 10 8 14 14 N 1.31412 * 120.00017 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00006 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47191 * 59.99828 * 15 13 11 17 17 H 1.48501 * 109.47197 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46929 * 299.99877 * 15 13 11 19 19 N 1.46505 * 109.46994 * 239.99660 * 2 1 3 20 20 C 1.34780 * 119.99775 * 84.88092 * 19 2 1 21 21 O 1.21279 * 119.99546 * 0.02562 * 20 19 2 22 22 C 1.50697 * 119.99949 * 180.02562 * 20 19 2 23 23 H 1.09006 * 115.55662 * 11.44695 * 22 20 19 24 24 C 1.53083 * 117.50900 * 157.17363 * 22 20 19 25 25 C 1.52555 * 117.53898 * 225.68331 * 22 20 19 26 26 C 1.53873 * 120.82671 * 142.35035 * 25 22 20 27 27 C 1.54997 * 104.05884 * 192.35134 * 26 25 22 28 28 C 1.54925 * 102.82198 * 37.56797 * 27 26 25 29 29 C 1.53480 * 121.09170 * 2.97284 * 25 22 20 30 30 H 1.08995 * 109.47764 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46857 * 300.00379 * 1 2 3 32 32 H 1.09002 * 109.47052 * 59.99906 * 1 2 3 33 33 H 1.09001 * 109.46623 * 296.13395 * 4 2 1 34 34 H 1.08995 * 109.47653 * 56.13334 * 4 2 1 35 35 H 1.09001 * 109.46982 * 65.18320 * 6 5 4 36 36 H 1.08995 * 109.47035 * 185.18644 * 6 5 4 37 37 H 1.08999 * 109.47074 * 305.18965 * 6 5 4 38 38 H 1.08998 * 109.47010 * 310.00471 * 7 5 4 39 39 H 1.08996 * 109.46834 * 69.99905 * 7 5 4 40 40 H 0.97001 * 120.00271 * 359.97438 * 10 8 7 41 41 H 0.97011 * 119.99863 * 180.02562 * 14 13 11 42 42 H 0.96995 * 120.00162 * 264.88628 * 19 2 1 43 43 H 1.09003 * 117.50953 * 214.94740 * 24 22 20 44 44 H 1.08995 * 117.51519 * 359.97438 * 24 22 20 45 45 H 1.08999 * 110.50733 * 310.99105 * 26 25 22 46 46 H 1.09000 * 110.51123 * 73.70877 * 26 25 22 47 47 H 1.08996 * 110.73899 * 279.23533 * 27 26 25 48 48 H 1.09002 * 110.74040 * 155.90244 * 27 26 25 49 49 H 1.08994 * 110.47793 * 203.59360 * 28 27 26 50 50 H 1.09001 * 110.47823 * 80.96292 * 28 27 26 51 51 H 1.09003 * 110.07084 * 263.32492 * 29 25 22 52 52 H 1.09003 * 110.07378 * 24.85025 * 29 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5060 -0.8028 1.2035 6 6 4.0034 -1.8511 2.1044 7 6 4.1155 0.4959 1.5197 8 6 5.5926 0.4423 1.2263 9 8 6.0889 -0.5776 0.7965 10 7 6.3624 1.5273 1.4423 11 6 7.7064 1.4783 1.1759 12 1 8.1482 0.5705 0.7925 13 6 8.4999 2.5971 1.3982 14 7 7.9620 3.7022 1.8633 15 14 10.3309 2.5307 1.0344 16 1 10.5392 2.2230 -0.4033 17 1 10.9472 3.8433 1.3546 18 1 10.9622 1.4726 1.8636 19 7 2.0183 -0.6907 -1.1962 20 6 2.1447 -0.0190 -2.3578 21 8 1.8547 1.1574 -2.4126 22 6 2.6465 -0.7295 -3.5884 23 1 2.7006 -1.8158 -3.5149 24 6 2.2822 -0.1300 -4.9490 25 6 3.7110 -0.0259 -4.4244 26 6 4.8515 -0.8227 -5.0817 27 6 5.8545 0.2656 -5.5421 28 6 5.7870 1.3032 -4.3937 29 6 4.2976 1.3236 -3.9880 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7342 -0.1691 2.1379 34 1 1.6212 -1.7271 1.2845 35 1 3.6653 -2.8249 1.7503 36 1 5.0930 -1.8287 2.1212 37 1 3.6209 -1.6774 3.1102 38 1 3.6521 1.2725 0.9112 39 1 3.9626 0.7217 2.5750 40 1 5.9656 2.3428 1.7864 41 1 8.5160 4.4834 2.0181 42 1 2.2506 -1.6314 -1.1522 43 1 2.0967 -0.8218 -5.7706 44 1 1.6793 0.7780 -4.9540 45 1 5.3180 -1.4901 -4.3572 46 1 4.4798 -1.3862 -5.9376 47 1 5.5352 0.7111 -6.4842 48 1 6.8592 -0.1480 -5.6303 49 1 6.0992 2.2854 -4.7484 50 1 6.4064 0.9848 -3.5552 51 1 3.7822 2.1378 -4.4974 52 1 4.2057 1.4398 -2.9080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268752869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:48 Heat of formation + Delta-G solvation = -55.545464 kcal Electronic energy + Delta-G solvation = -30924.853006 eV Core-core repulsion = 26924.512255 eV Total energy + Delta-G solvation = -4000.340750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.27762 -38.85672 -38.09355 -36.73428 -34.66923 -33.95355 -33.72671 -31.21123 -30.97820 -28.59230 -28.02725 -26.93404 -25.68288 -24.69026 -24.22021 -22.32773 -20.83165 -20.62590 -20.07915 -19.08479 -18.72244 -17.81453 -16.94413 -16.16316 -16.07701 -15.50585 -15.27558 -15.19745 -14.68510 -14.49853 -14.29450 -13.99313 -13.78826 -13.60569 -13.40169 -13.20610 -13.03755 -12.79287 -12.34591 -12.31126 -12.13152 -12.04937 -11.99200 -11.77168 -11.46737 -11.41946 -11.18922 -11.04054 -10.99284 -10.86458 -10.82331 -10.61740 -10.42372 -10.40902 -10.20838 -10.18683 -9.78080 -9.44397 -9.43429 -8.81655 -8.41025 -7.95475 -7.86119 -6.38393 -3.79064 2.67331 3.21402 3.27132 3.29398 3.31465 3.93272 3.94942 4.00218 4.25135 4.48500 4.67979 4.75098 4.82022 4.93049 5.06294 5.12193 5.20457 5.24741 5.26832 5.29084 5.32480 5.43368 5.56181 5.62385 5.65094 5.68666 5.70447 5.73552 5.74586 5.82770 5.89821 5.94522 5.98541 6.00380 6.04491 6.07380 6.10348 6.14886 6.28129 6.31376 6.32901 6.49152 6.53436 6.58716 6.70883 7.25460 7.35800 7.57570 7.76888 8.09045 8.49736 8.65089 9.21108 9.57961 10.09751 10.79333 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008047 B = 0.004378 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.833374 B = 6393.925687 C = 8834.067730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.086 0.914 4 C 0.043 3.957 5 N -0.514 5.514 6 C 0.024 3.976 7 C 0.044 3.956 8 C 0.446 3.554 9 O -0.577 6.577 10 N -0.564 5.564 11 C -0.297 4.297 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.702 5.702 20 C 0.548 3.452 21 O -0.546 6.546 22 C -0.182 4.182 23 H 0.116 0.884 24 C -0.139 4.139 25 C -0.087 4.087 26 C -0.090 4.090 27 C -0.120 4.120 28 C -0.126 4.126 29 C -0.084 4.084 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.013 0.987 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.391 0.609 41 H 0.272 0.728 42 H 0.402 0.598 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.066 0.934 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.558 -8.495 -8.185 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.104 0.896 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.123 4.123 7 C -0.088 4.088 8 C 0.231 3.769 9 O -0.462 6.462 10 N -0.200 5.200 11 C -0.427 4.427 12 H 0.119 0.881 13 C -0.178 4.178 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.200 1.200 19 N -0.352 5.352 20 C 0.335 3.665 21 O -0.424 6.424 22 C -0.203 4.203 23 H 0.134 0.866 24 C -0.176 4.176 25 C -0.087 4.087 26 C -0.127 4.127 27 C -0.158 4.158 28 C -0.164 4.164 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.031 0.969 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.224 0.776 41 H 0.081 0.919 42 H 0.236 0.764 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.091 0.909 51 H 0.084 0.916 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.191 -8.271 -8.909 17.938 hybrid contribution 0.465 0.264 1.118 1.239 sum -12.725 -8.008 -7.791 16.934 Atomic orbital electron populations 1.22143 0.95327 1.01924 1.02537 1.20918 0.92996 0.97799 0.84136 0.89564 1.22482 0.89117 1.00783 0.96183 1.61534 1.03586 1.05304 1.53348 1.22514 1.03803 0.93835 0.92195 1.21909 0.95707 0.91841 0.99298 1.19676 0.87218 0.85100 0.84864 1.90477 1.74389 1.31371 1.49932 1.41858 1.08356 1.12374 1.57452 1.19612 0.82788 0.99583 1.40725 0.88059 1.25239 1.00501 0.94901 0.97204 1.69609 1.36940 1.02527 1.45209 0.85955 0.82144 0.77251 0.79088 1.19879 1.20989 1.19973 1.45658 1.66705 1.14144 1.08690 1.19496 0.76715 0.86585 0.83725 1.90667 1.50690 1.15821 1.85229 1.22270 1.06918 0.99667 0.91467 0.86624 1.23026 0.97933 1.02793 0.93867 1.21730 0.89859 0.97488 0.99657 1.21944 0.94341 0.97145 0.99291 1.22456 0.98790 0.96273 0.98276 1.22390 0.96560 0.98997 0.98431 1.21592 0.94682 0.93913 1.01938 0.92566 0.91787 0.91897 0.93394 0.90415 0.92209 0.88677 0.96869 0.89609 0.93586 0.77566 0.91860 0.76418 0.88301 0.87788 0.90697 0.91686 0.91685 0.91504 0.91694 0.90889 0.91560 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.15 1.84 2.59 -67.92 -0.18 1.67 16 3 H 0.09 1.32 6.33 -51.93 -0.33 0.99 16 4 C 0.04 0.51 4.54 -3.82 -0.02 0.50 16 5 N -0.51 -8.10 4.18 -244.37 -1.02 -9.12 16 6 C 0.02 0.37 9.16 60.07 0.55 0.92 16 7 C 0.04 0.80 5.28 -4.98 -0.03 0.77 16 8 C 0.45 10.53 7.42 -10.99 -0.08 10.45 16 9 O -0.58 -15.25 13.96 5.55 0.08 -15.18 16 10 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 11 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 12 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 13 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 14 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 15 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 N -0.70 -9.11 4.83 -53.80 -0.26 -9.37 16 20 C 0.55 8.13 6.83 -10.98 -0.07 8.06 16 21 O -0.55 -9.78 14.73 5.56 0.08 -9.70 16 22 C -0.18 -2.28 6.05 -91.96 -0.56 -2.84 16 23 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 24 C -0.14 -1.57 9.75 -26.91 -0.26 -1.84 16 25 C -0.09 -1.13 2.43 -154.26 -0.38 -1.50 16 26 C -0.09 -1.04 6.58 -25.22 -0.17 -1.21 16 27 C -0.12 -1.42 6.91 -24.66 -0.17 -1.59 16 28 C -0.13 -1.83 6.84 -24.99 -0.17 -2.00 16 29 C -0.08 -1.29 5.65 -25.76 -0.15 -1.43 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.53 8.00 -51.93 -0.42 0.12 16 34 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.82 5.79 -51.93 -0.30 1.52 16 37 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 38 H 0.09 1.53 6.67 -51.93 -0.35 1.19 16 39 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.40 4.62 8.60 -40.82 -0.35 4.27 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.29 7.86 -51.93 -0.41 0.88 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.07 1.37 6.82 -51.93 -0.35 1.01 16 LS Contribution 415.04 15.07 6.25 6.25 Total: -1.00 -31.98 415.04 -9.87 -41.86 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -9.09 Total: 16.89 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.56 Total: 0.75 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.62 Total: -57.06 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.16 Total: -24.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.98 -9.87 -41.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268752869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.687 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds