Wall clock time and date at job start Tue Mar 31 2020 20:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47764 * 2 1 4 4 C 1.53005 * 109.46895 * 120.00571 * 2 1 3 5 5 N 1.46899 * 109.47217 * 176.13723 * 4 2 1 6 6 C 1.46901 * 111.00155 * 199.32920 * 5 4 2 7 7 C 1.46901 * 111.00236 * 75.37127 * 5 4 2 8 8 C 1.50698 * 109.47056 * 190.00382 * 7 5 4 9 9 O 1.21294 * 119.99894 * 359.97438 * 8 7 5 10 10 N 1.34775 * 119.99938 * 180.02562 * 8 7 5 11 11 C 1.37096 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.07996 * 120.00404 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99718 * 179.97438 * 11 10 8 14 14 N 1.31412 * 120.00017 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00006 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47191 * 59.99828 * 15 13 11 17 17 H 1.48501 * 109.47197 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46929 * 299.99877 * 15 13 11 19 19 N 1.46505 * 109.46994 * 239.99660 * 2 1 3 20 20 C 1.34780 * 119.99775 * 84.88092 * 19 2 1 21 21 O 1.21279 * 119.99546 * 0.02562 * 20 19 2 22 22 C 1.50697 * 119.99949 * 180.02562 * 20 19 2 23 23 H 1.09006 * 115.55662 * 11.44695 * 22 20 19 24 24 C 1.53083 * 117.50900 * 157.17363 * 22 20 19 25 25 C 1.52555 * 117.53898 * 225.68331 * 22 20 19 26 26 C 1.53873 * 120.82671 * 142.35035 * 25 22 20 27 27 C 1.54997 * 104.05884 * 192.35134 * 26 25 22 28 28 C 1.54925 * 102.82198 * 37.56797 * 27 26 25 29 29 C 1.53480 * 121.09170 * 2.97284 * 25 22 20 30 30 H 1.08995 * 109.47764 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46857 * 300.00379 * 1 2 3 32 32 H 1.09002 * 109.47052 * 59.99906 * 1 2 3 33 33 H 1.09001 * 109.46623 * 296.13395 * 4 2 1 34 34 H 1.08995 * 109.47653 * 56.13334 * 4 2 1 35 35 H 1.09001 * 109.46982 * 65.18320 * 6 5 4 36 36 H 1.08995 * 109.47035 * 185.18644 * 6 5 4 37 37 H 1.08999 * 109.47074 * 305.18965 * 6 5 4 38 38 H 1.08998 * 109.47010 * 310.00471 * 7 5 4 39 39 H 1.08996 * 109.46834 * 69.99905 * 7 5 4 40 40 H 0.97001 * 120.00271 * 359.97438 * 10 8 7 41 41 H 0.97011 * 119.99863 * 180.02562 * 14 13 11 42 42 H 0.96995 * 120.00162 * 264.88628 * 19 2 1 43 43 H 1.09003 * 117.50953 * 214.94740 * 24 22 20 44 44 H 1.08995 * 117.51519 * 359.97438 * 24 22 20 45 45 H 1.08999 * 110.50733 * 310.99105 * 26 25 22 46 46 H 1.09000 * 110.51123 * 73.70877 * 26 25 22 47 47 H 1.08996 * 110.73899 * 279.23533 * 27 26 25 48 48 H 1.09002 * 110.74040 * 155.90244 * 27 26 25 49 49 H 1.08994 * 110.47793 * 203.59360 * 28 27 26 50 50 H 1.09001 * 110.47823 * 80.96292 * 28 27 26 51 51 H 1.09003 * 110.07084 * 263.32492 * 29 25 22 52 52 H 1.09003 * 110.07378 * 24.85025 * 29 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5060 -0.8028 1.2035 6 6 4.0034 -1.8511 2.1044 7 6 4.1155 0.4959 1.5197 8 6 5.5926 0.4423 1.2263 9 8 6.0889 -0.5776 0.7965 10 7 6.3624 1.5273 1.4423 11 6 7.7064 1.4783 1.1759 12 1 8.1482 0.5705 0.7925 13 6 8.4999 2.5971 1.3982 14 7 7.9620 3.7022 1.8633 15 14 10.3309 2.5307 1.0344 16 1 10.5392 2.2230 -0.4033 17 1 10.9472 3.8433 1.3546 18 1 10.9622 1.4726 1.8636 19 7 2.0183 -0.6907 -1.1962 20 6 2.1447 -0.0190 -2.3578 21 8 1.8547 1.1574 -2.4126 22 6 2.6465 -0.7295 -3.5884 23 1 2.7006 -1.8158 -3.5149 24 6 2.2822 -0.1300 -4.9490 25 6 3.7110 -0.0259 -4.4244 26 6 4.8515 -0.8227 -5.0817 27 6 5.8545 0.2656 -5.5421 28 6 5.7870 1.3032 -4.3937 29 6 4.2976 1.3236 -3.9880 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7342 -0.1691 2.1379 34 1 1.6212 -1.7271 1.2845 35 1 3.6653 -2.8249 1.7503 36 1 5.0930 -1.8287 2.1212 37 1 3.6209 -1.6774 3.1102 38 1 3.6521 1.2725 0.9112 39 1 3.9626 0.7217 2.5750 40 1 5.9656 2.3428 1.7864 41 1 8.5160 4.4834 2.0181 42 1 2.2506 -1.6314 -1.1522 43 1 2.0967 -0.8218 -5.7706 44 1 1.6793 0.7780 -4.9540 45 1 5.3180 -1.4901 -4.3572 46 1 4.4798 -1.3862 -5.9376 47 1 5.5352 0.7111 -6.4842 48 1 6.8592 -0.1480 -5.6303 49 1 6.0992 2.2854 -4.7484 50 1 6.4064 0.9848 -3.5552 51 1 3.7822 2.1378 -4.4974 52 1 4.2057 1.4398 -2.9080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268752869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:47 Heat of formation + Delta-G solvation = -77.514206 kcal Electronic energy + Delta-G solvation = -30925.805642 eV Core-core repulsion = 26924.512255 eV Total energy + Delta-G solvation = -4001.293386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.37464 -40.43138 -39.37768 -38.10442 -36.12538 -35.52753 -35.01156 -33.28391 -32.02628 -29.67733 -29.60723 -27.97810 -26.75047 -26.60513 -25.25079 -23.59957 -21.94395 -21.74605 -21.17413 -20.85915 -19.86179 -19.76927 -18.13954 -17.76380 -17.21750 -16.71844 -16.62604 -16.54284 -16.28421 -15.92514 -15.53406 -15.47214 -15.26957 -14.98970 -14.82665 -14.35341 -14.19864 -13.88652 -13.71950 -13.46158 -13.34641 -13.33754 -13.08428 -13.05771 -12.91436 -12.82113 -12.67401 -12.47918 -12.39331 -12.14782 -12.03395 -12.01518 -11.87314 -11.72704 -11.49611 -11.44321 -11.20794 -10.88719 -10.54446 -10.27394 -10.01014 -9.90385 -9.21013 -8.46959 -5.95678 1.37523 1.38729 1.49998 1.56171 2.04321 2.24957 2.29652 2.77584 2.93628 3.19700 3.35565 3.47318 3.65462 3.80812 3.84537 3.92127 4.05063 4.14628 4.18003 4.23563 4.29363 4.31187 4.40743 4.49178 4.52399 4.55154 4.65060 4.69784 4.70630 4.76162 4.78278 4.82883 4.83319 4.89923 4.99932 5.02409 5.08004 5.12894 5.18356 5.20430 5.26637 5.28532 5.34829 5.39139 5.44092 5.64270 5.87042 6.05844 6.20655 6.59112 6.71043 7.11904 7.40416 7.55057 8.10486 8.70560 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008047 B = 0.004378 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3478.833374 B = 6393.925687 C = 8834.067730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.145 3.855 3 H 0.051 0.949 4 C 0.050 3.950 5 N -0.529 5.529 6 C 0.030 3.970 7 C 0.058 3.942 8 C 0.444 3.556 9 O -0.607 6.607 10 N -0.577 5.577 11 C -0.329 4.329 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.923 5.923 15 Si 0.991 3.009 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.269 1.269 19 N -0.696 5.696 20 C 0.537 3.463 21 O -0.587 6.587 22 C -0.189 4.189 23 H 0.143 0.857 24 C -0.116 4.116 25 C -0.102 4.102 26 C -0.083 4.083 27 C -0.113 4.113 28 C -0.130 4.130 29 C -0.082 4.082 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.392 0.608 41 H 0.277 0.723 42 H 0.410 0.590 43 H 0.136 0.864 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.039 0.961 51 H 0.063 0.937 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.818 -10.390 -8.975 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.039 3.961 3 H 0.069 0.931 4 C -0.078 4.078 5 N -0.253 5.253 6 C -0.118 4.118 7 C -0.073 4.073 8 C 0.231 3.769 9 O -0.493 6.493 10 N -0.214 5.214 11 C -0.459 4.459 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.564 5.564 15 Si 0.814 3.186 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.194 1.194 19 N -0.345 5.345 20 C 0.325 3.675 21 O -0.468 6.468 22 C -0.209 4.209 23 H 0.160 0.840 24 C -0.153 4.153 25 C -0.103 4.103 26 C -0.120 4.120 27 C -0.151 4.151 28 C -0.168 4.168 29 C -0.120 4.120 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.225 0.775 41 H 0.086 0.914 42 H 0.246 0.754 43 H 0.153 0.847 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.058 0.942 51 H 0.082 0.918 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.476 -10.193 -9.673 20.175 hybrid contribution 0.800 0.860 1.411 1.836 sum -13.676 -9.333 -8.263 18.504 Atomic orbital electron populations 1.22036 0.93078 1.03310 1.02369 1.20964 0.94657 0.96043 0.84392 0.93106 1.22556 0.86262 1.02786 0.96202 1.61473 1.05992 1.03911 1.53949 1.22410 1.01102 0.94854 0.93438 1.21694 0.91597 0.93648 1.00355 1.20666 0.89371 0.83886 0.82971 1.90450 1.75743 1.32336 1.50772 1.41958 1.08077 1.13063 1.58336 1.19593 0.84277 0.99493 1.42500 0.90251 1.26040 1.04644 0.94182 0.96460 1.69684 1.38471 1.02930 1.45338 0.85024 0.76877 0.77859 0.78820 1.19777 1.19515 1.19385 1.45677 1.65953 1.14482 1.08418 1.20010 0.76290 0.86308 0.84917 1.90642 1.52565 1.17608 1.85967 1.22412 1.06705 1.00784 0.91039 0.83965 1.23090 0.95607 1.02650 0.93993 1.21760 0.91243 0.96322 1.00959 1.21935 0.93406 0.96748 0.99960 1.22460 0.99614 0.95397 0.97599 1.22380 0.95373 1.00363 0.98686 1.21490 0.95615 0.95973 0.98897 0.90294 0.90204 0.93850 0.91685 0.87239 0.89639 0.93037 0.94872 0.89638 0.91594 0.77450 0.91395 0.75365 0.84651 0.89311 0.91850 0.88419 0.89657 0.90739 0.91336 0.94239 0.91849 0.95487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.48 71.98 0.68 -2.09 16 2 C 0.14 3.51 2.59 44.99 0.12 3.62 16 3 H 0.05 1.61 6.33 -2.39 -0.02 1.59 16 4 C 0.05 1.06 4.54 86.30 0.39 1.45 16 5 N -0.53 -16.12 4.18 -927.06 -3.88 -20.00 16 6 C 0.03 0.86 9.16 127.69 1.17 2.03 16 7 C 0.06 2.15 5.28 85.56 0.45 2.60 16 8 C 0.44 21.83 7.42 87.66 0.65 22.48 16 9 O -0.61 -33.50 13.96 -3.07 -0.04 -33.54 16 10 N -0.58 -30.94 5.29 -306.99 -1.62 -32.57 16 11 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 12 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.92 -51.65 13.05 21.66 0.28 -51.37 16 15 Si 0.99 44.04 29.55 68.60 2.03 46.07 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 N -0.70 -17.65 4.83 -442.52 -2.14 -19.79 16 20 C 0.54 16.19 6.83 87.66 0.60 16.79 16 21 O -0.59 -22.12 14.73 -3.03 -0.04 -22.17 16 22 C -0.19 -4.53 6.05 -11.66 -0.07 -4.60 16 23 H 0.14 2.60 8.14 -2.38 -0.02 2.59 16 24 C -0.12 -2.41 9.75 30.48 0.30 -2.12 16 25 C -0.10 -2.60 2.43 -52.02 -0.13 -2.73 16 26 C -0.08 -1.78 6.58 31.57 0.21 -1.57 16 27 C -0.11 -2.55 6.91 31.94 0.22 -2.33 16 28 C -0.13 -3.98 6.84 31.72 0.22 -3.76 16 29 C -0.08 -2.68 5.65 31.22 0.18 -2.51 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.23 8.00 -2.39 -0.02 1.21 16 34 H 0.11 1.71 7.94 -2.39 -0.02 1.69 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.98 5.79 -2.39 -0.01 1.97 16 37 H 0.03 0.82 8.13 -2.39 -0.02 0.80 16 38 H 0.09 3.17 6.67 -2.39 -0.02 3.15 16 39 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 40 H 0.39 20.42 7.90 -92.71 -0.73 19.69 16 41 H 0.28 14.53 8.31 -92.70 -0.77 13.76 16 42 H 0.41 8.78 8.60 -92.71 -0.80 7.98 16 43 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.09 2.15 7.86 -2.39 -0.02 2.13 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.10 1.48 8.11 -2.39 -0.02 1.46 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.03 1.10 6.82 -2.39 -0.02 1.08 16 Total: -1.00 -74.71 415.04 0.24 -74.47 By element: Atomic # 1 Polarization: 50.90 SS G_CDS: -0.61 Total: 50.29 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.26 Total: 8.60 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -7.35 Total: -123.72 kcal Atomic # 8 Polarization: -55.62 SS G_CDS: -0.09 Total: -55.71 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -74.71 0.24 -74.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268752869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.042 kcal (2) G-P(sol) polarization free energy of solvation -74.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds