Wall clock time and date at job start Tue Mar 31 2020 20:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47373 * 2 1 4 4 C 1.53002 * 109.47082 * 119.99973 * 2 1 3 5 5 N 1.46892 * 109.47234 * 175.14086 * 4 2 1 6 6 C 1.46903 * 111.00196 * 198.96618 * 5 4 2 7 7 C 1.46899 * 111.00489 * 75.00712 * 5 4 2 8 8 C 1.50700 * 109.47388 * 190.00364 * 7 5 4 9 9 O 1.21292 * 120.00151 * 359.97438 * 8 7 5 10 10 N 1.34774 * 119.99788 * 180.02562 * 8 7 5 11 11 C 1.37104 * 119.99808 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00107 * 359.97438 * 11 10 8 13 13 C 1.38957 * 119.99728 * 179.72096 * 11 10 8 14 14 N 1.31413 * 120.00151 * 0.27459 * 13 11 10 15 15 Si 1.86806 * 119.99840 * 180.27352 * 13 11 10 16 16 H 1.48503 * 109.46712 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46855 * 119.99722 * 15 13 11 18 18 H 1.48496 * 109.47102 * 240.00364 * 15 13 11 19 19 N 1.46504 * 109.47313 * 239.99659 * 2 1 3 20 20 C 1.34779 * 120.00002 * 82.90427 * 19 2 1 21 21 O 1.21285 * 119.99814 * 0.02562 * 20 19 2 22 22 C 1.50695 * 119.99948 * 180.02562 * 20 19 2 23 23 H 1.09000 * 115.55931 * 34.27989 * 22 20 19 24 24 C 1.53091 * 117.50536 * 248.49783 * 22 20 19 25 25 C 1.52555 * 117.50661 * 180.02562 * 22 20 19 26 26 C 1.53869 * 120.82667 * 357.24980 * 25 22 20 27 27 C 1.54994 * 104.06435 * 192.35575 * 26 25 22 28 28 C 1.54923 * 102.81465 * 37.57101 * 27 26 25 29 29 C 1.53479 * 121.08909 * 217.87825 * 25 22 20 30 30 H 1.08992 * 109.46769 * 300.00489 * 1 2 3 31 31 H 1.09002 * 109.46850 * 60.00520 * 1 2 3 32 32 H 1.09001 * 109.46905 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46980 * 55.13677 * 4 2 1 34 34 H 1.09001 * 109.46660 * 295.13768 * 4 2 1 35 35 H 1.09003 * 109.46973 * 289.97369 * 6 5 4 36 36 H 1.08995 * 109.47212 * 49.97089 * 6 5 4 37 37 H 1.09000 * 109.47140 * 169.97850 * 6 5 4 38 38 H 1.09000 * 109.46988 * 69.99963 * 7 5 4 39 39 H 1.09002 * 109.47343 * 310.00432 * 7 5 4 40 40 H 0.97002 * 120.00330 * 359.97438 * 10 8 7 41 41 H 0.97000 * 119.99451 * 179.97438 * 14 13 11 42 42 H 0.96997 * 119.99789 * 262.91415 * 19 2 1 43 43 H 1.08998 * 117.51327 * 0.02562 * 24 22 20 44 44 H 1.09006 * 117.50689 * 145.08635 * 24 22 20 45 45 H 1.08993 * 110.51167 * 311.00473 * 26 25 22 46 46 H 1.09002 * 110.51109 * 73.71743 * 26 25 22 47 47 H 1.08991 * 110.74538 * 279.23797 * 27 26 25 48 48 H 1.09004 * 110.74070 * 155.89969 * 27 26 25 49 49 H 1.09008 * 110.47875 * 203.59366 * 28 27 26 50 50 H 1.08997 * 110.48191 * 80.96607 * 28 27 26 51 51 H 1.09002 * 110.07173 * 263.31316 * 29 25 22 52 52 H 1.08998 * 110.06844 * 24.79027 * 29 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5043 -0.8237 1.1921 6 6 3.9949 -1.8678 2.1015 7 6 4.1346 0.4700 1.4870 8 6 5.6082 0.3921 1.1817 9 8 6.0866 -0.6397 0.7603 10 7 6.3948 1.4688 1.3778 11 6 7.7357 1.3978 1.1005 12 1 8.1616 0.4790 0.7253 13 6 8.5456 2.5096 1.2973 14 7 8.0274 3.6275 1.7542 15 14 10.3711 2.4152 0.9123 16 1 10.7022 1.0560 0.4141 17 1 10.7101 3.4193 -0.1280 18 1 11.1519 2.6953 2.1439 19 7 2.0184 -0.6907 -1.1961 20 6 2.1072 -0.0294 -2.3672 21 8 1.7831 1.1377 -2.4306 22 6 2.6090 -0.7400 -3.5977 23 1 2.3418 -1.7940 -3.6739 24 6 3.9687 -0.3122 -4.1560 25 6 2.6869 0.0629 -4.8925 26 6 2.2074 1.5241 -4.9442 27 6 2.1551 1.8499 -6.4586 28 6 1.6437 0.5251 -7.0777 29 6 2.3341 -0.5750 -6.2431 30 1 -0.3632 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6073 -1.7207 1.2939 34 1 1.7495 -0.1595 2.1371 35 1 3.8598 -1.5437 3.1334 36 1 3.4356 -2.7881 1.9335 37 1 5.0535 -2.0463 1.9125 38 1 3.9940 0.7108 2.5408 39 1 3.6768 1.2456 0.8730 40 1 6.0124 2.2939 1.7152 41 1 8.5930 4.4034 1.8919 42 1 2.2778 -1.6240 -1.1453 43 1 4.5003 0.4828 -3.6331 44 1 4.5965 -1.0851 -4.5996 45 1 1.2168 1.6170 -4.4992 46 1 2.9177 2.1773 -4.4374 47 1 3.1482 2.0941 -6.8355 48 1 1.4559 2.6629 -6.6547 49 1 1.9412 0.4532 -8.1240 50 1 0.5604 0.4528 -6.9825 51 1 3.2406 -0.9124 -6.7456 52 1 1.6549 -1.4144 -6.0942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268752870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:52 Heat of formation + Delta-G solvation = -54.175606 kcal Electronic energy + Delta-G solvation = -30360.002820 eV Core-core repulsion = 26359.721471 eV Total energy + Delta-G solvation = -4000.281349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.29599 -38.87832 -38.11854 -36.73867 -34.64236 -34.11572 -33.73409 -31.21762 -30.95527 -28.72254 -28.03712 -26.93681 -25.77882 -24.69365 -24.20367 -22.35405 -20.81627 -20.74497 -20.18171 -19.10229 -18.75829 -17.82274 -17.00396 -16.15291 -16.12984 -15.46751 -15.26559 -15.19993 -14.68597 -14.52891 -14.34518 -14.00109 -13.89785 -13.58043 -13.45294 -13.38035 -12.95787 -12.83475 -12.60112 -12.27285 -12.11857 -12.10684 -12.00750 -11.79220 -11.47020 -11.40119 -11.22150 -11.19494 -11.04245 -11.03480 -10.87519 -10.61601 -10.59353 -10.32825 -10.22039 -10.20383 -9.84316 -9.46541 -9.28441 -8.82415 -8.44507 -7.96125 -7.84755 -6.39198 -3.79887 2.73813 3.17629 3.26539 3.28055 3.34900 3.86409 3.92982 3.99376 4.24837 4.41808 4.59146 4.74583 4.80850 4.86092 5.00580 5.09980 5.11053 5.17104 5.22263 5.27518 5.32101 5.43706 5.47706 5.56984 5.60120 5.64073 5.68017 5.71363 5.73045 5.76149 5.81294 5.84832 5.90595 5.94568 5.99709 6.04094 6.06187 6.13111 6.15858 6.17256 6.30535 6.39432 6.49847 6.52773 6.72047 7.24113 7.35448 7.57472 7.77576 8.08939 8.50147 8.64440 9.20725 9.57417 10.09134 10.78693 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008757 B = 0.003400 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.752225 B = 8232.816858 C =10378.422772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.148 3.852 3 H 0.085 0.915 4 C 0.043 3.957 5 N -0.514 5.514 6 C 0.023 3.977 7 C 0.044 3.956 8 C 0.447 3.553 9 O -0.578 6.578 10 N -0.565 5.565 11 C -0.297 4.297 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.928 3.072 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.702 5.702 20 C 0.546 3.454 21 O -0.543 6.543 22 C -0.180 4.180 23 H 0.117 0.883 24 C -0.135 4.135 25 C -0.097 4.097 26 C -0.075 4.075 27 C -0.129 4.129 28 C -0.122 4.122 29 C -0.088 4.088 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.015 0.985 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.402 0.598 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.068 0.932 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.243 -8.019 -9.013 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.103 0.897 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.124 4.124 7 C -0.087 4.087 8 C 0.232 3.768 9 O -0.462 6.462 10 N -0.202 5.202 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.755 3.245 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.352 5.352 20 C 0.333 3.667 21 O -0.420 6.420 22 C -0.201 4.201 23 H 0.135 0.865 24 C -0.172 4.172 25 C -0.097 4.097 26 C -0.112 4.112 27 C -0.166 4.166 28 C -0.159 4.159 29 C -0.126 4.126 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.224 0.776 41 H 0.080 0.920 42 H 0.237 0.763 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.087 0.913 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.921 -7.836 -9.753 20.248 hybrid contribution 0.615 0.251 1.137 1.317 sum -15.306 -7.584 -8.616 19.131 Atomic orbital electron populations 1.22143 0.95329 1.01902 1.02561 1.20911 0.93022 0.97692 0.84166 0.89696 1.22497 0.89199 1.00778 0.96152 1.61554 1.03222 1.05779 1.53259 1.22554 1.04012 0.93401 0.92462 1.21934 0.95548 0.91792 0.99414 1.19683 0.87105 0.85187 0.84820 1.90465 1.75214 1.30327 1.50199 1.41874 1.08374 1.12162 1.57748 1.19727 0.82850 0.99303 1.40795 0.87916 1.25258 1.00571 0.94870 0.97272 1.69625 1.36738 1.02226 1.45689 0.85822 0.82148 0.78514 0.77988 1.19237 1.20746 1.20801 1.45698 1.66215 1.15270 1.08035 1.19574 0.77003 0.86455 0.83672 1.90664 1.49768 1.16353 1.85260 1.22234 1.04236 1.00000 0.93654 0.86457 1.23030 0.89176 1.03385 1.01634 1.21748 1.00716 0.96495 0.90775 1.21845 1.02483 0.92264 0.94640 1.22573 1.00906 0.96877 0.96279 1.22329 0.99943 0.95011 0.98622 1.21667 1.00261 0.97684 0.92974 0.91815 0.91834 0.92602 0.90393 0.93436 0.96639 0.92462 0.88468 0.93535 0.89582 0.77563 0.91955 0.76320 0.87858 0.87937 0.90132 0.91330 0.91647 0.91757 0.91845 0.91763 0.91346 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.46 37.16 0.35 -1.29 16 2 C 0.15 1.83 2.55 -67.92 -0.17 1.66 16 3 H 0.09 1.28 6.41 -51.93 -0.33 0.95 16 4 C 0.04 0.50 4.54 -3.83 -0.02 0.49 16 5 N -0.51 -8.05 4.16 -244.37 -1.02 -9.07 16 6 C 0.02 0.36 9.19 60.07 0.55 0.91 16 7 C 0.04 0.80 5.28 -4.98 -0.03 0.78 16 8 C 0.45 10.56 7.54 -10.99 -0.08 10.48 16 9 O -0.58 -15.28 13.88 5.55 0.08 -15.20 16 10 N -0.56 -14.52 5.29 -10.96 -0.06 -14.57 16 11 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 12 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 13 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 14 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 15 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 N -0.70 -9.02 4.83 -53.80 -0.26 -9.28 16 20 C 0.55 7.97 7.55 -10.99 -0.08 7.89 16 21 O -0.54 -9.44 13.38 5.55 0.07 -9.36 16 22 C -0.18 -2.22 6.06 -91.96 -0.56 -2.78 16 23 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 24 C -0.13 -1.74 9.94 -26.93 -0.27 -2.01 16 25 C -0.10 -1.15 2.44 -154.28 -0.38 -1.53 16 26 C -0.08 -0.97 4.77 -25.23 -0.12 -1.09 16 27 C -0.13 -1.34 6.91 -24.66 -0.17 -1.51 16 28 C -0.12 -1.10 6.84 -24.99 -0.17 -1.27 16 29 C -0.09 -0.84 6.54 -25.76 -0.17 -1.01 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.77 7.75 -51.93 -0.40 0.37 16 34 H 0.05 0.52 8.01 -51.93 -0.42 0.11 16 35 H 0.02 0.22 8.06 -51.93 -0.42 -0.20 16 36 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 37 H 0.10 1.84 6.01 -51.93 -0.31 1.53 16 38 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.09 1.53 6.67 -51.93 -0.35 1.18 16 40 H 0.39 9.76 7.90 -40.82 -0.32 9.43 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 42 H 0.40 4.65 8.58 -40.82 -0.35 4.30 16 43 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.15 6.97 -51.93 -0.36 0.79 16 46 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 52 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 413.66 15.07 6.23 6.23 Total: -1.00 -31.96 413.66 -9.89 -41.84 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -9.09 Total: 15.63 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.55 Total: 1.71 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.61 Total: -57.08 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.15 Total: -24.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.96 -9.89 -41.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268752870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.332 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds