Wall clock time and date at job start Tue Mar 31 2020 20:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47373 * 2 1 4 4 C 1.53002 * 109.47082 * 119.99973 * 2 1 3 5 5 N 1.46892 * 109.47234 * 175.14086 * 4 2 1 6 6 C 1.46903 * 111.00196 * 198.96618 * 5 4 2 7 7 C 1.46899 * 111.00489 * 75.00712 * 5 4 2 8 8 C 1.50700 * 109.47388 * 190.00364 * 7 5 4 9 9 O 1.21292 * 120.00151 * 359.97438 * 8 7 5 10 10 N 1.34774 * 119.99788 * 180.02562 * 8 7 5 11 11 C 1.37104 * 119.99808 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00107 * 359.97438 * 11 10 8 13 13 C 1.38957 * 119.99728 * 179.72096 * 11 10 8 14 14 N 1.31413 * 120.00151 * 0.27459 * 13 11 10 15 15 Si 1.86806 * 119.99840 * 180.27352 * 13 11 10 16 16 H 1.48503 * 109.46712 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46855 * 119.99722 * 15 13 11 18 18 H 1.48496 * 109.47102 * 240.00364 * 15 13 11 19 19 N 1.46504 * 109.47313 * 239.99659 * 2 1 3 20 20 C 1.34779 * 120.00002 * 82.90427 * 19 2 1 21 21 O 1.21285 * 119.99814 * 0.02562 * 20 19 2 22 22 C 1.50695 * 119.99948 * 180.02562 * 20 19 2 23 23 H 1.09000 * 115.55931 * 34.27989 * 22 20 19 24 24 C 1.53091 * 117.50536 * 248.49783 * 22 20 19 25 25 C 1.52555 * 117.50661 * 180.02562 * 22 20 19 26 26 C 1.53869 * 120.82667 * 357.24980 * 25 22 20 27 27 C 1.54994 * 104.06435 * 192.35575 * 26 25 22 28 28 C 1.54923 * 102.81465 * 37.57101 * 27 26 25 29 29 C 1.53479 * 121.08909 * 217.87825 * 25 22 20 30 30 H 1.08992 * 109.46769 * 300.00489 * 1 2 3 31 31 H 1.09002 * 109.46850 * 60.00520 * 1 2 3 32 32 H 1.09001 * 109.46905 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46980 * 55.13677 * 4 2 1 34 34 H 1.09001 * 109.46660 * 295.13768 * 4 2 1 35 35 H 1.09003 * 109.46973 * 289.97369 * 6 5 4 36 36 H 1.08995 * 109.47212 * 49.97089 * 6 5 4 37 37 H 1.09000 * 109.47140 * 169.97850 * 6 5 4 38 38 H 1.09000 * 109.46988 * 69.99963 * 7 5 4 39 39 H 1.09002 * 109.47343 * 310.00432 * 7 5 4 40 40 H 0.97002 * 120.00330 * 359.97438 * 10 8 7 41 41 H 0.97000 * 119.99451 * 179.97438 * 14 13 11 42 42 H 0.96997 * 119.99789 * 262.91415 * 19 2 1 43 43 H 1.08998 * 117.51327 * 0.02562 * 24 22 20 44 44 H 1.09006 * 117.50689 * 145.08635 * 24 22 20 45 45 H 1.08993 * 110.51167 * 311.00473 * 26 25 22 46 46 H 1.09002 * 110.51109 * 73.71743 * 26 25 22 47 47 H 1.08991 * 110.74538 * 279.23797 * 27 26 25 48 48 H 1.09004 * 110.74070 * 155.89969 * 27 26 25 49 49 H 1.09008 * 110.47875 * 203.59366 * 28 27 26 50 50 H 1.08997 * 110.48191 * 80.96607 * 28 27 26 51 51 H 1.09002 * 110.07173 * 263.31316 * 29 25 22 52 52 H 1.08998 * 110.06844 * 24.79027 * 29 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5043 -0.8237 1.1921 6 6 3.9949 -1.8678 2.1015 7 6 4.1346 0.4700 1.4870 8 6 5.6082 0.3921 1.1817 9 8 6.0866 -0.6397 0.7603 10 7 6.3948 1.4688 1.3778 11 6 7.7357 1.3978 1.1005 12 1 8.1616 0.4790 0.7253 13 6 8.5456 2.5096 1.2973 14 7 8.0274 3.6275 1.7542 15 14 10.3711 2.4152 0.9123 16 1 10.7022 1.0560 0.4141 17 1 10.7101 3.4193 -0.1280 18 1 11.1519 2.6953 2.1439 19 7 2.0184 -0.6907 -1.1961 20 6 2.1072 -0.0294 -2.3672 21 8 1.7831 1.1377 -2.4306 22 6 2.6090 -0.7400 -3.5977 23 1 2.3418 -1.7940 -3.6739 24 6 3.9687 -0.3122 -4.1560 25 6 2.6869 0.0629 -4.8925 26 6 2.2074 1.5241 -4.9442 27 6 2.1551 1.8499 -6.4586 28 6 1.6437 0.5251 -7.0777 29 6 2.3341 -0.5750 -6.2431 30 1 -0.3632 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6073 -1.7207 1.2939 34 1 1.7495 -0.1595 2.1371 35 1 3.8598 -1.5437 3.1334 36 1 3.4356 -2.7881 1.9335 37 1 5.0535 -2.0463 1.9125 38 1 3.9940 0.7108 2.5408 39 1 3.6768 1.2456 0.8730 40 1 6.0124 2.2939 1.7152 41 1 8.5930 4.4034 1.8919 42 1 2.2778 -1.6240 -1.1453 43 1 4.5003 0.4828 -3.6331 44 1 4.5965 -1.0851 -4.5996 45 1 1.2168 1.6170 -4.4992 46 1 2.9177 2.1773 -4.4374 47 1 3.1482 2.0941 -6.8355 48 1 1.4559 2.6629 -6.6547 49 1 1.9412 0.4532 -8.1240 50 1 0.5604 0.4528 -6.9825 51 1 3.2406 -0.9124 -6.7456 52 1 1.6549 -1.4144 -6.0942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268752870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:51 Heat of formation + Delta-G solvation = -75.829849 kcal Electronic energy + Delta-G solvation = -30360.941818 eV Core-core repulsion = 26359.721471 eV Total energy + Delta-G solvation = -4001.220347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36788 -40.42220 -39.35847 -38.08075 -36.10425 -35.50339 -35.07071 -33.28694 -31.99106 -29.61049 -29.58741 -27.97048 -26.70831 -26.59741 -25.26295 -23.61907 -21.93544 -21.57915 -21.32987 -20.85829 -19.87097 -19.71491 -18.16568 -17.76101 -17.23707 -16.65767 -16.63030 -16.38432 -16.13850 -15.89640 -15.60721 -15.36438 -15.30154 -15.04644 -14.89229 -14.32761 -14.19971 -13.83997 -13.70329 -13.55858 -13.44130 -13.22386 -13.12867 -13.05451 -12.91426 -12.83578 -12.63465 -12.47064 -12.37517 -12.12939 -12.00149 -11.95669 -11.75580 -11.71965 -11.46251 -11.40388 -11.22169 -10.86903 -10.39182 -10.27351 -10.01464 -9.90720 -9.20475 -8.47625 -5.96387 1.34781 1.39330 1.53889 1.61127 2.04260 2.23146 2.28363 2.77656 2.85991 3.19037 3.35926 3.50332 3.68504 3.81336 3.84727 3.95625 4.04681 4.15945 4.19222 4.28611 4.32026 4.33636 4.41751 4.49238 4.56754 4.61270 4.64743 4.71378 4.75751 4.76525 4.78363 4.83240 4.88666 4.92539 5.00435 5.07578 5.09676 5.11810 5.22477 5.23592 5.29384 5.35095 5.39650 5.45368 5.50768 5.65863 5.87129 6.05840 6.21361 6.58939 6.71743 7.11883 7.40996 7.55056 8.10525 8.70327 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008757 B = 0.003400 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.752225 B = 8232.816858 C =10378.422772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.145 3.855 3 H 0.051 0.949 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.029 3.971 7 C 0.059 3.941 8 C 0.444 3.556 9 O -0.608 6.608 10 N -0.578 5.578 11 C -0.329 4.329 12 H 0.080 0.920 13 C -0.016 4.016 14 N -0.923 5.923 15 Si 0.993 3.007 16 H -0.271 1.271 17 H -0.273 1.273 18 H -0.269 1.269 19 N -0.695 5.695 20 C 0.535 3.465 21 O -0.580 6.580 22 C -0.178 4.178 23 H 0.149 0.851 24 C -0.147 4.147 25 C -0.093 4.093 26 C -0.077 4.077 27 C -0.127 4.127 28 C -0.117 4.117 29 C -0.084 4.084 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.393 0.607 41 H 0.277 0.723 42 H 0.411 0.589 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.070 0.930 51 H 0.080 0.920 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.603 -9.781 -9.464 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.069 0.931 4 C -0.078 4.078 5 N -0.253 5.253 6 C -0.119 4.119 7 C -0.073 4.073 8 C 0.232 3.768 9 O -0.493 6.493 10 N -0.216 5.216 11 C -0.459 4.459 12 H 0.098 0.902 13 C -0.215 4.215 14 N -0.565 5.565 15 Si 0.816 3.184 16 H -0.196 1.196 17 H -0.198 1.198 18 H -0.194 1.194 19 N -0.345 5.345 20 C 0.322 3.678 21 O -0.460 6.460 22 C -0.199 4.199 23 H 0.167 0.833 24 C -0.184 4.184 25 C -0.094 4.094 26 C -0.114 4.114 27 C -0.164 4.164 28 C -0.154 4.154 29 C -0.121 4.121 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.226 0.774 41 H 0.086 0.914 42 H 0.247 0.753 43 H 0.084 0.916 44 H 0.141 0.859 45 H 0.082 0.918 46 H 0.053 0.947 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.088 0.912 51 H 0.098 0.902 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.306 -9.617 -10.180 22.262 hybrid contribution 0.992 0.805 1.325 1.841 sum -16.314 -8.812 -8.855 20.547 Atomic orbital electron populations 1.22035 0.93171 1.03239 1.02364 1.20963 0.94620 0.96026 0.84384 0.93057 1.22566 0.86334 1.02787 0.96142 1.61468 1.05573 1.04406 1.53856 1.22447 1.01926 0.94683 0.92851 1.21727 0.91457 0.93611 1.00476 1.20690 0.89252 0.83975 0.82931 1.90444 1.76554 1.31302 1.51026 1.41977 1.08093 1.12863 1.58642 1.19692 0.84399 0.99145 1.42645 0.90179 1.26068 1.04694 0.94181 0.96553 1.69694 1.38307 1.02670 1.45787 0.84873 0.76872 0.78335 0.78281 1.19550 1.19828 1.19446 1.45714 1.65472 1.15559 1.07755 1.20058 0.76679 0.86227 0.84811 1.90650 1.51464 1.17991 1.85924 1.22362 1.03265 1.01388 0.92896 0.83350 1.22971 0.89757 1.03187 1.02506 1.21866 0.99390 0.95981 0.92133 1.21761 1.00507 0.92884 0.96277 1.22567 1.01320 0.98360 0.94177 1.22337 1.00242 0.93402 0.99425 1.21709 1.01225 0.98088 0.91122 0.90207 0.93867 0.90396 0.87206 0.91727 0.95605 0.89077 0.92752 0.91563 0.89464 0.77418 0.91398 0.75333 0.91620 0.85879 0.91816 0.94749 0.91619 0.91139 0.89902 0.91164 0.90188 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.46 71.98 0.68 -2.07 16 2 C 0.15 3.45 2.55 44.99 0.11 3.57 16 3 H 0.05 1.58 6.41 -2.39 -0.02 1.57 16 4 C 0.05 1.03 4.54 86.31 0.39 1.42 16 5 N -0.53 -15.85 4.16 -927.06 -3.86 -19.70 16 6 C 0.03 0.82 9.19 127.69 1.17 2.00 16 7 C 0.06 2.12 5.28 85.56 0.45 2.57 16 8 C 0.44 21.67 7.54 87.66 0.66 22.33 16 9 O -0.61 -33.31 13.88 -3.07 -0.04 -33.35 16 10 N -0.58 -30.86 5.29 -306.98 -1.62 -32.48 16 11 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 12 H 0.08 4.94 7.16 -2.91 -0.02 4.91 16 13 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 14 N -0.92 -51.54 13.05 21.67 0.28 -51.26 16 15 Si 0.99 43.99 29.55 68.60 2.03 46.01 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 19 N -0.70 -17.39 4.83 -442.51 -2.14 -19.53 16 20 C 0.53 15.94 7.55 87.66 0.66 16.60 16 21 O -0.58 -21.37 13.38 -3.04 -0.04 -21.41 16 22 C -0.18 -4.33 6.06 -11.66 -0.07 -4.40 16 23 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 24 C -0.15 -3.90 9.94 30.47 0.30 -3.60 16 25 C -0.09 -2.21 2.44 -52.03 -0.13 -2.34 16 26 C -0.08 -2.10 4.77 31.57 0.15 -1.95 16 27 C -0.13 -2.60 6.91 31.93 0.22 -2.38 16 28 C -0.12 -1.85 6.84 31.72 0.22 -1.63 16 29 C -0.08 -1.41 6.54 31.23 0.20 -1.21 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.66 7.75 -2.39 -0.02 1.64 16 34 H 0.06 1.19 8.01 -2.39 -0.02 1.17 16 35 H 0.03 0.68 8.06 -2.39 -0.02 0.66 16 36 H 0.09 1.97 7.83 -2.39 -0.02 1.95 16 37 H 0.05 2.06 6.01 -2.39 -0.01 2.04 16 38 H 0.07 2.14 8.06 -2.39 -0.02 2.13 16 39 H 0.09 3.16 6.67 -2.39 -0.02 3.14 16 40 H 0.39 20.31 7.90 -92.71 -0.73 19.57 16 41 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.41 8.79 8.58 -92.71 -0.80 7.99 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 45 H 0.06 1.94 6.97 -2.39 -0.02 1.93 16 46 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -73.61 413.66 0.32 -73.29 By element: Atomic # 1 Polarization: 48.88 SS G_CDS: -0.61 Total: 48.27 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 6.31 Total: 10.16 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -7.33 Total: -122.97 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.08 Total: -54.76 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -73.61 0.32 -73.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268752870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.542 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds