Wall clock time and date at job start Tue Mar 31 2020 20:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46898 * 109.47386 * 64.99548 * 4 2 1 6 6 C 1.46901 * 111.00283 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47433 * 180.02562 * 6 5 4 8 8 O 1.21302 * 119.99547 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00406 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00472 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99493 * 359.97438 * 10 9 7 12 12 C 1.38948 * 120.00278 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00152 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00009 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47159 * 90.00138 * 14 12 10 16 16 H 1.48497 * 109.47160 * 210.00125 * 14 12 10 17 17 H 1.48505 * 109.47508 * 330.00259 * 14 12 10 18 18 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 19 19 N 1.46505 * 109.47119 * 294.99950 * 18 2 1 20 20 C 1.34773 * 119.99820 * 180.02562 * 19 18 2 21 21 O 1.21279 * 120.00339 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99583 * 180.02562 * 20 19 18 23 23 C 1.52308 * 115.91032 * 248.28675 * 22 20 19 24 24 C 1.52069 * 115.92936 * 180.02562 * 22 20 19 25 25 H 1.09008 * 117.25437 * 0.46111 * 24 22 20 26 26 C 1.52711 * 120.52489 * 210.73846 * 24 22 20 27 27 C 1.52876 * 110.14984 * 21.46940 * 26 24 22 28 28 C 1.53294 * 108.58132 * 305.47623 * 27 26 24 29 29 C 1.52067 * 114.63970 * 33.37983 * 22 20 19 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 33 33 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 34 34 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 35 35 H 1.00895 * 111.00526 * 303.95502 * 5 4 2 36 36 H 1.09002 * 109.46761 * 300.00031 * 6 5 4 37 37 H 1.08993 * 109.46846 * 60.00149 * 6 5 4 38 38 H 0.97003 * 119.99386 * 359.97438 * 9 7 6 39 39 H 0.96993 * 120.00508 * 179.97438 * 13 12 10 40 40 H 1.08994 * 109.47065 * 55.00225 * 18 2 1 41 41 H 1.09000 * 109.46818 * 175.00170 * 18 2 1 42 42 H 0.97003 * 119.99621 * 0.02562 * 19 18 2 43 43 H 1.08997 * 117.54245 * 0.85590 * 23 22 20 44 44 H 1.09006 * 117.53381 * 146.10421 * 23 22 20 45 45 H 1.09005 * 109.35847 * 141.67727 * 26 24 22 46 46 H 1.09004 * 109.35646 * 261.26005 * 26 24 22 47 47 H 1.08997 * 109.61929 * 65.20704 * 27 26 24 48 48 H 1.09002 * 109.61690 * 185.56847 * 27 26 24 49 49 H 1.09007 * 109.61627 * 194.17032 * 28 27 26 50 50 H 1.08998 * 109.61885 * 314.71375 * 28 27 26 51 51 H 1.08997 * 109.27275 * 285.89685 * 29 22 20 52 52 H 1.08998 * 109.26644 * 45.36471 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1247 -0.6270 -3.6673 7 6 1.7087 0.1788 -4.8709 8 8 1.0793 1.2055 -4.7253 9 7 2.0350 -0.2417 -6.1091 10 6 1.6562 0.4910 -7.2040 11 1 1.0957 1.4051 -7.0744 12 6 1.9931 0.0577 -8.4805 13 7 2.6754 -1.0543 -8.6381 14 14 1.4761 1.0558 -9.9725 15 1 2.5354 2.0443 -10.2979 16 1 1.2742 0.1476 -11.1298 17 1 0.2078 1.7690 -9.6758 18 6 2.0401 -0.7213 1.2492 19 7 1.6525 0.0353 2.4424 20 6 1.9965 -0.4132 3.6659 21 8 2.6273 -1.4428 3.7791 22 6 1.5973 0.3648 4.8932 23 6 2.7350 1.0215 5.6641 24 6 2.0339 -0.2247 6.2253 25 1 2.6046 -1.1530 6.1973 26 6 1.1917 -0.0115 7.4812 27 6 -0.2473 0.3344 7.0978 28 6 -0.2242 1.5395 6.1506 29 6 0.2632 1.0858 4.7807 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7994 -1.2057 34 1 1.6055 -1.7197 -1.2952 35 1 0.6529 0.1794 -2.4754 36 1 3.2116 -0.7048 -3.6406 37 1 1.6904 -1.6247 -3.7297 38 1 2.5381 -1.0629 -6.2254 39 1 2.9103 -1.3570 -9.5292 40 1 1.6055 -1.7198 1.2950 41 1 3.1264 -0.7994 1.2055 42 1 1.1483 0.8590 2.3518 43 1 3.7452 0.8985 5.2738 44 1 2.5301 1.9761 6.1488 45 1 1.1972 -0.9230 8.0789 46 1 1.6158 0.8045 8.0664 47 1 -0.7070 -0.5169 6.5958 48 1 -0.8157 0.5811 7.9945 49 1 -1.2275 1.9569 6.0650 50 1 0.4581 2.2962 6.5378 51 1 0.3783 1.9569 4.1357 52 1 -0.4744 0.4116 4.3454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270509470.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:37 Heat of formation + Delta-G solvation = -75.135874 kcal Electronic energy + Delta-G solvation = -28466.198205 eV Core-core repulsion = 24465.007951 eV Total energy + Delta-G solvation = -4001.190254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09122 -38.85018 -38.31232 -37.17114 -34.95581 -33.87686 -33.51609 -32.48330 -31.26924 -31.11868 -27.42740 -27.20703 -25.38839 -24.89360 -23.92437 -22.82711 -21.87258 -20.90635 -20.41798 -19.28024 -18.73064 -17.92996 -17.76382 -16.63848 -15.95083 -15.84593 -15.59029 -15.15498 -14.94820 -14.72768 -14.51517 -14.42192 -14.26582 -14.06513 -13.78525 -13.72028 -13.50498 -13.02650 -12.91677 -12.81563 -12.62934 -12.48714 -12.35467 -12.05131 -11.59314 -11.54555 -11.45975 -11.33721 -11.20819 -11.07633 -10.99530 -10.96685 -10.90156 -10.40922 -10.39672 -10.22093 -10.16536 -9.92354 -9.51169 -9.31077 -8.46732 -8.06968 -7.96100 -6.41819 -3.82749 2.24025 2.83461 3.17823 3.26418 3.32134 3.35638 3.90756 4.06226 4.10065 4.18033 4.28475 4.31329 4.35876 4.57596 4.70264 4.71581 4.75430 4.80074 4.87020 5.00101 5.05478 5.13119 5.15323 5.25421 5.30418 5.35396 5.37423 5.41379 5.42684 5.53224 5.58743 5.61280 5.62951 5.66252 5.71504 5.76530 5.79228 5.83294 5.85095 5.94013 5.98461 6.05136 6.12614 6.22732 6.27220 7.19875 7.22771 7.54981 7.65369 7.96497 8.06148 8.61118 9.17642 9.54214 10.05601 10.75912 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.001484 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.213948 B =18858.336531 C =19287.534011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.124 3.876 19 N -0.722 5.722 20 C 0.545 3.455 21 O -0.541 6.541 22 C -0.145 4.145 23 C -0.156 4.156 24 C -0.113 4.113 25 H 0.116 0.884 26 C -0.090 4.090 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.084 4.084 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.349 0.651 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.401 0.599 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.538 1.112 31.186 31.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.000 4.000 19 N -0.373 5.373 20 C 0.331 3.669 21 O -0.418 6.418 22 C -0.148 4.148 23 C -0.193 4.193 24 C -0.132 4.132 25 H 0.134 0.866 26 C -0.127 4.127 27 C -0.159 4.159 28 C -0.157 4.157 29 C -0.121 4.121 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.169 0.831 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.237 0.763 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.090 0.910 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.904 1.382 31.174 31.339 hybrid contribution -0.625 -0.495 -1.190 1.432 sum -3.529 0.886 29.984 30.204 Atomic orbital electron populations 1.21902 0.94739 1.02052 1.02272 1.21362 0.96452 1.01174 0.93057 0.89283 1.21879 1.00786 0.94409 0.89330 1.60096 1.21021 1.49028 1.00013 1.21672 1.01205 0.95375 0.90010 1.19812 0.85621 0.87931 0.84036 1.90518 1.44407 1.26210 1.85722 1.41862 1.49543 1.24170 1.04422 1.19708 1.32925 1.06734 0.83619 0.87915 1.25261 0.96909 0.96635 0.99113 1.69607 1.38872 1.21723 1.24076 0.85852 0.79149 0.79041 0.80204 1.20385 1.20940 1.19439 1.21398 1.00271 0.95232 0.83056 1.45950 1.57883 1.27888 1.05610 1.19646 0.78755 0.84770 0.83736 1.90698 1.40216 1.24320 1.86587 1.21067 0.97918 1.03977 0.91858 1.23226 0.95908 0.97666 1.02529 1.22271 1.01055 0.98302 0.91550 0.86603 1.21095 0.94626 1.01965 0.95023 1.21575 0.96504 0.98414 0.99388 1.21487 1.01443 0.97991 0.94797 1.20744 0.93443 0.99538 0.98410 0.92642 0.92779 0.91379 0.90769 0.95179 0.83077 0.89558 0.93852 0.77443 0.91866 0.91376 0.91232 0.76337 0.88399 0.87723 0.91230 0.91276 0.91568 0.91606 0.91202 0.91630 0.90991 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 2 C -0.10 -0.98 2.63 -90.62 -0.24 -1.22 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.07 0.78 5.14 -3.83 -0.02 0.76 16 5 N -0.67 -10.54 6.12 -115.06 -0.70 -11.25 16 6 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 7 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 8 O -0.58 -15.85 15.78 5.54 0.09 -15.77 16 9 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 10 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 11 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 14 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.12 1.20 5.06 -4.04 -0.02 1.18 16 19 N -0.72 -6.30 5.18 -60.30 -0.31 -6.62 16 20 C 0.54 5.74 7.28 -10.99 -0.08 5.66 16 21 O -0.54 -7.79 16.07 5.56 0.09 -7.71 16 22 C -0.15 -1.12 2.49 -156.96 -0.39 -1.51 16 23 C -0.16 -1.08 9.27 -26.77 -0.25 -1.32 16 24 C -0.11 -0.86 5.65 -90.93 -0.51 -1.37 16 25 H 0.12 1.09 7.50 -51.92 -0.39 0.70 16 26 C -0.09 -0.50 5.83 -26.94 -0.16 -0.65 16 27 C -0.12 -0.62 5.93 -26.64 -0.16 -0.78 16 28 C -0.12 -0.57 5.67 -26.93 -0.15 -0.72 16 29 C -0.08 -0.48 4.69 -27.55 -0.13 -0.61 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.40 7.18 -51.93 -0.37 0.03 16 32 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.35 5.63 6.68 -39.29 -0.26 5.37 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.40 2.69 6.63 -40.82 -0.27 2.42 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.55 7.26 -51.93 -0.38 0.18 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.33 8.06 -51.93 -0.42 -0.09 16 47 H 0.07 0.39 8.06 -51.93 -0.42 -0.03 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.06 0.29 7.11 -51.93 -0.37 -0.08 16 51 H 0.07 0.33 7.81 -51.93 -0.41 -0.07 16 52 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 412.19 15.07 6.21 6.21 Total: -1.00 -33.06 412.19 -10.08 -43.14 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -8.96 Total: 12.69 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.14 Total: 1.50 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.35 Total: -56.11 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.18 Total: -23.47 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.06 -10.08 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270509470.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.995 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds