Wall clock time and date at job start Tue Mar 31 2020 20:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46898 * 109.47386 * 64.99548 * 4 2 1 6 6 C 1.46901 * 111.00283 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47433 * 180.02562 * 6 5 4 8 8 O 1.21302 * 119.99547 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00406 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00472 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99493 * 359.97438 * 10 9 7 12 12 C 1.38948 * 120.00278 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00152 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00009 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47159 * 90.00138 * 14 12 10 16 16 H 1.48497 * 109.47160 * 210.00125 * 14 12 10 17 17 H 1.48505 * 109.47508 * 330.00259 * 14 12 10 18 18 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 19 19 N 1.46505 * 109.47119 * 294.99950 * 18 2 1 20 20 C 1.34773 * 119.99820 * 180.02562 * 19 18 2 21 21 O 1.21279 * 120.00339 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99583 * 180.02562 * 20 19 18 23 23 C 1.52308 * 115.91032 * 248.28675 * 22 20 19 24 24 C 1.52069 * 115.92936 * 180.02562 * 22 20 19 25 25 H 1.09008 * 117.25437 * 0.46111 * 24 22 20 26 26 C 1.52711 * 120.52489 * 210.73846 * 24 22 20 27 27 C 1.52876 * 110.14984 * 21.46940 * 26 24 22 28 28 C 1.53294 * 108.58132 * 305.47623 * 27 26 24 29 29 C 1.52067 * 114.63970 * 33.37983 * 22 20 19 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 33 33 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 34 34 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 35 35 H 1.00895 * 111.00526 * 303.95502 * 5 4 2 36 36 H 1.09002 * 109.46761 * 300.00031 * 6 5 4 37 37 H 1.08993 * 109.46846 * 60.00149 * 6 5 4 38 38 H 0.97003 * 119.99386 * 359.97438 * 9 7 6 39 39 H 0.96993 * 120.00508 * 179.97438 * 13 12 10 40 40 H 1.08994 * 109.47065 * 55.00225 * 18 2 1 41 41 H 1.09000 * 109.46818 * 175.00170 * 18 2 1 42 42 H 0.97003 * 119.99621 * 0.02562 * 19 18 2 43 43 H 1.08997 * 117.54245 * 0.85590 * 23 22 20 44 44 H 1.09006 * 117.53381 * 146.10421 * 23 22 20 45 45 H 1.09005 * 109.35847 * 141.67727 * 26 24 22 46 46 H 1.09004 * 109.35646 * 261.26005 * 26 24 22 47 47 H 1.08997 * 109.61929 * 65.20704 * 27 26 24 48 48 H 1.09002 * 109.61690 * 185.56847 * 27 26 24 49 49 H 1.09007 * 109.61627 * 194.17032 * 28 27 26 50 50 H 1.08998 * 109.61885 * 314.71375 * 28 27 26 51 51 H 1.08997 * 109.27275 * 285.89685 * 29 22 20 52 52 H 1.08998 * 109.26644 * 45.36471 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1247 -0.6270 -3.6673 7 6 1.7087 0.1788 -4.8709 8 8 1.0793 1.2055 -4.7253 9 7 2.0350 -0.2417 -6.1091 10 6 1.6562 0.4910 -7.2040 11 1 1.0957 1.4051 -7.0744 12 6 1.9931 0.0577 -8.4805 13 7 2.6754 -1.0543 -8.6381 14 14 1.4761 1.0558 -9.9725 15 1 2.5354 2.0443 -10.2979 16 1 1.2742 0.1476 -11.1298 17 1 0.2078 1.7690 -9.6758 18 6 2.0401 -0.7213 1.2492 19 7 1.6525 0.0353 2.4424 20 6 1.9965 -0.4132 3.6659 21 8 2.6273 -1.4428 3.7791 22 6 1.5973 0.3648 4.8932 23 6 2.7350 1.0215 5.6641 24 6 2.0339 -0.2247 6.2253 25 1 2.6046 -1.1530 6.1973 26 6 1.1917 -0.0115 7.4812 27 6 -0.2473 0.3344 7.0978 28 6 -0.2242 1.5395 6.1506 29 6 0.2632 1.0858 4.7807 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7994 -1.2057 34 1 1.6055 -1.7197 -1.2952 35 1 0.6529 0.1794 -2.4754 36 1 3.2116 -0.7048 -3.6406 37 1 1.6904 -1.6247 -3.7297 38 1 2.5381 -1.0629 -6.2254 39 1 2.9103 -1.3570 -9.5292 40 1 1.6055 -1.7198 1.2950 41 1 3.1264 -0.7994 1.2055 42 1 1.1483 0.8590 2.3518 43 1 3.7452 0.8985 5.2738 44 1 2.5301 1.9761 6.1488 45 1 1.1972 -0.9230 8.0789 46 1 1.6158 0.8045 8.0664 47 1 -0.7070 -0.5169 6.5958 48 1 -0.8157 0.5811 7.9945 49 1 -1.2275 1.9569 6.0650 50 1 0.4581 2.2962 6.5378 51 1 0.3783 1.9569 4.1357 52 1 -0.4744 0.4116 4.3454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270509470.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:36 Heat of formation + Delta-G solvation = -97.989630 kcal Electronic energy + Delta-G solvation = -28467.189218 eV Core-core repulsion = 24465.007951 eV Total energy + Delta-G solvation = -4002.181267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.76549 -40.20545 -39.47233 -38.22927 -36.21759 -35.69534 -34.00397 -33.53415 -33.17459 -31.71420 -28.83621 -27.98481 -26.69806 -25.69771 -24.98206 -23.78874 -22.40061 -21.64438 -21.32301 -20.96596 -19.92432 -19.34445 -18.45858 -17.94357 -17.24471 -16.92321 -16.68410 -16.41974 -16.06769 -15.78958 -15.64188 -15.37491 -15.23870 -14.86430 -14.80041 -14.72116 -14.36052 -14.22251 -13.96632 -13.64889 -13.52846 -13.45125 -13.35225 -13.08857 -12.94858 -12.87739 -12.80246 -12.42199 -12.13445 -12.08826 -11.92234 -11.86953 -11.78394 -11.73117 -11.50894 -11.48156 -10.97424 -10.68533 -10.65879 -10.35025 -10.13637 -10.02156 -9.34045 -8.46940 -5.95976 1.38248 1.42077 1.44930 1.54856 2.04461 2.07407 2.29565 2.75819 2.93941 3.20368 3.50995 3.53184 3.66480 3.72664 3.84312 3.88310 3.92946 3.97466 4.11735 4.27466 4.32149 4.35776 4.45987 4.50382 4.52157 4.55571 4.56930 4.60246 4.70045 4.75007 4.77685 4.79026 4.92634 4.97704 4.99298 5.01206 5.11700 5.22513 5.23396 5.27545 5.32202 5.34592 5.38694 5.40625 5.44152 5.51707 5.87591 6.08958 6.40600 6.49400 6.59458 7.11967 7.18255 7.55559 8.10544 8.70424 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.001484 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.213948 B =18858.336531 C =19287.534011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.086 0.914 4 C 0.066 3.934 5 N -0.680 5.680 6 C 0.063 3.937 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.131 3.869 19 N -0.710 5.710 20 C 0.539 3.461 21 O -0.587 6.587 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.122 4.122 25 H 0.089 0.911 26 C -0.086 4.086 27 C -0.121 4.121 28 C -0.117 4.117 29 C -0.082 4.082 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.346 0.654 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.414 0.586 43 H 0.085 0.915 44 H 0.128 0.872 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.087 0.913 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 1.962 32.098 32.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.063 4.063 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.210 5.210 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.197 1.197 18 C 0.007 3.993 19 N -0.362 5.362 20 C 0.326 3.674 21 O -0.468 6.468 22 C -0.150 4.150 23 C -0.184 4.184 24 C -0.141 4.141 25 H 0.107 0.893 26 C -0.123 4.123 27 C -0.159 4.159 28 C -0.155 4.155 29 C -0.120 4.120 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.165 0.835 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.251 0.749 43 H 0.104 0.896 44 H 0.146 0.854 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.105 0.895 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.513 2.233 32.093 32.362 hybrid contribution -0.407 -0.795 -1.428 1.684 sum -3.920 1.438 30.665 30.948 Atomic orbital electron populations 1.21880 0.94027 1.02263 1.02549 1.21200 0.96881 1.00603 0.92002 0.89549 1.21959 1.01203 0.94724 0.88438 1.60095 1.20869 1.49999 1.00414 1.21539 1.02231 0.95118 0.88032 1.20867 0.83975 0.87661 0.85015 1.90485 1.45835 1.28126 1.86476 1.41935 1.50057 1.24277 1.04741 1.19690 1.34511 1.07031 0.85302 0.90226 1.26049 0.96400 0.97554 1.01232 1.69669 1.38915 1.22461 1.25070 0.84914 0.78634 0.77819 0.76881 1.19675 1.19547 1.19689 1.21249 0.99687 0.95087 0.83305 1.45861 1.57307 1.28033 1.04961 1.20197 0.77949 0.84377 0.84837 1.90674 1.42374 1.26436 1.87275 1.21113 0.99314 1.04087 0.90444 1.23284 0.94995 0.98281 1.01803 1.22273 1.01603 0.97614 0.92569 0.89254 1.21104 0.94744 1.02525 0.93972 1.21583 0.96032 0.98256 1.00006 1.21498 1.02242 0.97858 0.93859 1.20791 0.91905 0.99709 0.99555 0.92484 0.90908 0.92675 0.90333 0.94113 0.83456 0.87877 0.91631 0.76987 0.91294 0.91942 0.92102 0.74899 0.89635 0.85407 0.91303 0.89911 0.92785 0.90291 0.90083 0.90786 0.89503 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.84 71.98 0.64 -1.86 16 2 C -0.09 -1.59 2.63 -10.79 -0.03 -1.62 16 3 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.07 1.47 5.14 86.30 0.44 1.91 16 5 N -0.68 -20.76 6.12 -517.94 -3.17 -23.94 16 6 C 0.06 2.16 6.17 85.56 0.53 2.69 16 7 C 0.44 20.83 7.82 87.66 0.69 21.51 16 8 O -0.62 -34.40 15.78 -3.10 -0.05 -34.44 16 9 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 10 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16 11 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 14 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.13 2.42 5.06 86.38 0.44 2.86 16 19 N -0.71 -11.72 5.18 -463.07 -2.40 -14.12 16 20 C 0.54 11.29 7.28 87.66 0.64 11.92 16 21 O -0.59 -17.48 16.07 -3.03 -0.05 -17.53 16 22 C -0.15 -2.13 2.49 -53.77 -0.13 -2.27 16 23 C -0.15 -1.86 9.27 30.57 0.28 -1.58 16 24 C -0.12 -1.82 5.65 -10.99 -0.06 -1.88 16 25 H 0.09 1.81 7.50 -2.38 -0.02 1.79 16 26 C -0.09 -0.85 5.83 30.46 0.18 -0.67 16 27 C -0.12 -1.02 5.93 30.65 0.18 -0.83 16 28 C -0.12 -0.81 5.67 30.47 0.17 -0.63 16 29 C -0.08 -0.76 4.69 30.06 0.14 -0.62 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.93 7.18 -2.39 -0.02 0.91 16 32 H 0.05 1.09 6.68 -2.39 -0.02 1.07 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.35 10.96 6.68 -89.70 -0.60 10.36 16 36 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 39 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.41 4.78 6.63 -92.71 -0.61 4.17 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.13 1.02 7.26 -2.38 -0.02 1.00 16 45 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.08 0.59 8.06 -2.39 -0.02 0.58 16 47 H 0.05 0.59 8.06 -2.39 -0.02 0.57 16 48 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.08 0.41 8.14 -2.38 -0.02 0.40 16 50 H 0.07 0.41 7.11 -2.39 -0.02 0.39 16 51 H 0.09 0.55 7.81 -2.39 -0.02 0.53 16 52 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -72.57 412.19 -0.61 -73.18 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: -1.01 Total: 42.17 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.38 Total: 10.40 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -6.91 Total: -118.68 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.10 Total: -51.98 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.57 -0.61 -73.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270509470.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.814 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds