Wall clock time and date at job start Tue Mar 31 2020 20:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50699 * 119.99888 * 2 1 4 4 C 1.50693 * 119.99921 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.47490 * 95.00097 * 4 2 1 6 6 C 1.50693 * 109.47490 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99973 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00244 * 180.02562 * 6 5 4 9 9 C 1.47025 * 125.64701 * 0.02562 * 8 6 5 10 10 C 1.54329 * 107.27102 * 178.90880 * 9 8 6 11 11 C 1.55158 * 102.94071 * 337.80739 * 10 9 8 12 12 H 1.08992 * 111.00816 * 277.42622 * 11 10 9 13 13 C 1.53000 * 111.03072 * 153.59077 * 11 10 9 14 14 H 1.09000 * 109.47669 * 304.26437 * 13 11 10 15 15 C 1.52994 * 109.47208 * 64.27226 * 13 11 10 16 16 N 1.46901 * 109.46765 * 184.26781 * 13 11 10 17 17 C 1.46905 * 110.99884 * 154.99837 * 16 13 11 18 18 C 1.50700 * 109.46887 * 179.97438 * 17 16 13 19 19 O 1.21292 * 120.00359 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99679 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99739 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00046 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99776 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99690 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00313 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47193 * 89.99641 * 25 23 21 27 27 H 1.48494 * 109.47512 * 210.00256 * 25 23 21 28 28 H 1.48503 * 109.47008 * 330.00398 * 25 23 21 29 29 C 1.47432 * 125.65247 * 179.97438 * 8 6 5 30 30 H 1.08001 * 119.99705 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.99762 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46848 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47055 * 299.99194 * 3 2 1 34 34 H 1.08994 * 109.47247 * 59.99350 * 3 2 1 35 35 H 1.09001 * 109.47299 * 335.00163 * 4 2 1 36 36 H 1.09004 * 109.47543 * 215.00538 * 4 2 1 37 37 H 1.09001 * 109.46796 * 59.99758 * 5 4 2 38 38 H 1.08998 * 109.46778 * 300.00395 * 5 4 2 39 39 H 1.08997 * 109.88667 * 298.32897 * 9 8 6 40 40 H 1.09002 * 109.87860 * 59.49711 * 9 8 6 41 41 H 1.08996 * 110.71885 * 96.17861 * 10 9 8 42 42 H 1.09009 * 110.71654 * 219.44756 * 10 9 8 43 43 H 1.08999 * 109.47793 * 63.42676 * 15 13 11 44 44 H 1.09007 * 109.47033 * 183.43051 * 15 13 11 45 45 H 1.08999 * 109.47235 * 303.42537 * 15 13 11 46 46 H 1.00900 * 111.00367 * 31.05072 * 16 13 11 47 47 H 1.09000 * 109.47406 * 299.99889 * 17 16 13 48 48 H 1.09004 * 109.47025 * 60.00557 * 17 16 13 49 49 H 0.96996 * 120.00366 * 0.02562 * 20 18 17 50 50 H 0.97006 * 119.99533 * 180.02562 * 24 23 21 51 51 H 1.09003 * 110.36254 * 322.99906 * 29 8 6 52 52 H 1.09002 * 110.36415 * 85.31838 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 6 2.4275 -1.6846 -1.4362 6 6 3.1815 -2.9893 -1.4356 7 8 3.4053 -3.5598 -0.3890 8 7 3.6071 -3.5223 -2.5980 9 6 3.4057 -2.9392 -3.9325 10 6 4.0845 -3.8796 -4.9507 11 6 5.1170 -4.6453 -4.0817 12 1 6.0281 -4.0613 -3.9520 13 6 5.4294 -6.0176 -4.6818 14 1 4.5034 -6.5787 -4.8073 15 6 6.1051 -5.8373 -6.0426 16 7 6.3288 -6.7521 -3.7820 17 6 6.1930 -8.2026 -3.9709 18 6 7.1293 -8.9210 -3.0336 19 8 7.8394 -8.2871 -2.2819 20 7 7.1775 -10.2680 -3.0308 21 6 8.0288 -10.9215 -2.1777 22 1 8.6611 -10.3571 -1.5084 23 6 8.0789 -12.3101 -2.1751 24 7 8.8953 -12.9366 -1.3578 25 14 6.9858 -13.2864 -3.3333 26 1 7.6995 -13.5107 -4.6161 27 1 6.6546 -14.5955 -2.7156 28 1 5.7344 -12.5289 -3.5890 29 6 4.3526 -4.7860 -2.7419 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 3.1352 1.1059 -0.0005 33 1 1.8003 1.8766 -0.8901 34 1 1.8002 1.8767 0.8899 35 1 1.4386 -2.0852 0.4352 36 1 2.9742 -1.1986 0.5901 37 1 3.0524 -0.9044 -1.8709 38 1 1.5168 -1.7910 -2.0256 39 1 2.3398 -2.8665 -4.1484 40 1 3.8635 -1.9510 -3.9782 41 1 3.3585 -4.5679 -5.3834 42 1 4.5862 -3.3062 -5.7303 43 1 7.0605 -5.3298 -5.9096 44 1 6.2725 -6.8138 -6.4973 45 1 5.4636 -5.2401 -6.6905 46 1 6.1659 -6.4960 -2.8197 47 1 5.1665 -8.5020 -3.7597 48 1 6.4422 -8.4598 -5.0005 49 1 6.6099 -10.7749 -3.6321 50 1 8.9305 -13.9060 -1.3562 51 1 5.0536 -4.9090 -1.9163 52 1 3.6640 -5.6299 -2.7849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271490963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:13 Heat of formation + Delta-G solvation = -61.121914 kcal Electronic energy + Delta-G solvation = -28836.579344 eV Core-core repulsion = 24835.996780 eV Total energy + Delta-G solvation = -4000.582563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50026 -38.83286 -38.13978 -36.71458 -35.90037 -33.94696 -32.45808 -31.65328 -31.45810 -29.87381 -29.07117 -27.67213 -26.61740 -25.33408 -23.94524 -23.13341 -22.00633 -20.25507 -19.49994 -19.27511 -18.81060 -18.30810 -17.29253 -16.95364 -16.18832 -15.80389 -15.34971 -15.23917 -15.17589 -14.84566 -14.56592 -14.25456 -14.07112 -13.87385 -13.74796 -13.57265 -13.25971 -13.10055 -12.90731 -12.69357 -12.46988 -12.44124 -12.33773 -12.17049 -12.10934 -12.00770 -11.90933 -11.46600 -11.39941 -11.27550 -11.18786 -11.14681 -11.01500 -10.69479 -10.57994 -10.08490 -9.95371 -9.55165 -9.40156 -8.92433 -8.56413 -8.18817 -8.13805 -6.28784 -3.80104 1.79586 2.40834 2.70196 3.03693 3.07997 3.16126 3.76004 3.89230 4.11317 4.13448 4.17822 4.38623 4.47723 4.55235 4.62864 4.74455 4.81372 4.83669 4.86496 4.99010 5.12286 5.14372 5.16397 5.22085 5.24171 5.25776 5.28630 5.39888 5.47253 5.50282 5.54767 5.55300 5.59091 5.61611 5.69164 5.73051 5.79668 5.84517 5.86477 5.93863 5.99174 6.03654 6.24473 6.27332 6.48163 7.11619 7.23639 7.56353 7.60682 7.93124 8.17066 8.62149 8.97454 9.44768 9.85207 10.84396 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.001942 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.932358 B =14415.922411 C =15434.689410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.073 4.073 5 C -0.127 4.127 6 C 0.524 3.476 7 O -0.535 6.535 8 N -0.620 5.620 9 C 0.100 3.900 10 C -0.124 4.124 11 C -0.101 4.101 12 H 0.097 0.903 13 C 0.095 3.905 14 H 0.045 0.955 15 C -0.140 4.140 16 N -0.665 5.665 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.103 3.897 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.085 0.915 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.381 25.633 -9.615 32.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.124 4.124 3 C -0.179 4.179 4 C -0.111 4.111 5 C -0.167 4.167 6 C 0.313 3.687 7 O -0.411 6.411 8 N -0.355 5.355 9 C -0.023 4.023 10 C -0.162 4.162 11 C -0.121 4.121 12 H 0.115 0.885 13 C -0.015 4.015 14 H 0.062 0.938 15 C -0.198 4.198 16 N -0.299 5.299 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.445 6.445 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.019 4.019 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.172 0.828 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.103 0.897 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.170 25.639 -8.769 32.079 hybrid contribution -1.718 -1.226 -0.567 2.185 sum -18.887 24.413 -9.336 32.247 Atomic orbital electron populations 1.23700 0.95291 1.01909 1.02552 1.21784 0.95408 0.95664 0.99544 1.20880 1.00269 0.94650 1.02056 1.20475 1.01053 0.94360 0.95176 1.21590 1.00930 0.94738 0.99413 1.20436 0.79283 0.86805 0.82144 1.90757 1.56875 1.62913 1.30564 1.48516 1.56698 1.24018 1.06254 1.22071 1.00583 0.97507 0.82103 1.22697 0.98083 0.98246 0.97221 1.22558 0.98604 0.97097 0.93795 0.88517 1.21480 0.94000 0.92042 0.93987 0.93757 1.21809 1.01098 1.01916 0.94968 1.60157 1.54885 1.04159 1.10719 1.21758 0.97580 0.88666 1.00475 1.19716 0.87127 0.82517 0.87102 1.90572 1.45064 1.65788 1.43059 1.42205 1.38477 1.05451 1.36938 1.19440 1.17415 0.90088 1.16365 0.86275 1.25041 0.97386 0.96330 0.97450 1.69631 1.36636 1.09174 1.36716 0.86665 0.80593 0.80666 0.81400 1.19623 1.20210 1.19568 1.22354 0.95010 0.86131 0.98430 0.88487 0.88426 0.91822 0.91576 0.91497 0.90479 0.90276 0.88864 0.88977 0.91317 0.91203 0.90262 0.89484 0.91636 0.92569 0.92667 0.82810 0.93806 0.89438 0.79730 0.91647 0.89669 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 13.93 29.01 0.40 -0.87 16 2 C -0.12 -0.85 5.31 -101.07 -0.54 -1.39 16 3 C -0.12 -0.67 10.05 36.01 0.36 -0.31 16 4 C -0.07 -0.61 4.58 -27.89 -0.13 -0.74 16 5 C -0.13 -0.95 4.87 -27.89 -0.14 -1.09 16 6 C 0.52 6.00 7.85 -10.99 -0.09 5.91 16 7 O -0.53 -8.55 16.24 5.55 0.09 -8.46 16 8 N -0.62 -6.14 3.33 -170.52 -0.57 -6.71 16 9 C 0.10 0.62 6.49 -3.06 -0.02 0.60 16 10 C -0.12 -0.75 5.46 -24.89 -0.14 -0.88 16 11 C -0.10 -0.92 2.68 -88.48 -0.24 -1.16 16 12 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.10 1.01 2.15 -67.71 -0.15 0.87 16 14 H 0.04 0.45 7.80 -51.93 -0.40 0.05 16 15 C -0.14 -1.34 9.27 37.15 0.34 -1.00 16 16 N -0.67 -10.07 5.93 -107.99 -0.64 -10.71 16 17 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 18 C 0.45 10.35 7.82 -10.98 -0.09 10.27 16 19 O -0.56 -15.40 15.78 5.55 0.09 -15.32 16 20 N -0.59 -14.28 5.09 -10.96 -0.06 -14.34 16 21 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 22 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -26.08 13.96 55.50 0.77 -25.30 16 25 Si 0.88 19.58 27.74 -169.99 -4.71 14.87 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 29 C 0.10 1.15 5.53 -2.53 -0.01 1.13 16 30 H 0.10 0.52 8.05 -52.49 -0.42 0.10 16 31 H 0.10 0.62 7.99 -52.49 -0.42 0.20 16 32 H 0.06 0.35 8.00 -51.93 -0.42 -0.07 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.74 7.94 -51.93 -0.41 0.32 16 36 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.44 8.04 -51.93 -0.42 0.03 16 42 H 0.09 0.40 8.06 -51.92 -0.42 -0.02 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.57 7.54 -51.93 -0.39 0.18 16 45 H 0.05 0.39 7.27 -51.93 -0.38 0.01 16 46 H 0.35 5.72 6.78 -39.29 -0.27 5.45 16 47 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 48 H 0.09 1.29 7.50 -51.93 -0.39 0.90 16 49 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.08 1.16 7.55 -51.93 -0.39 0.77 16 52 H 0.07 0.76 8.04 -51.93 -0.42 0.35 16 LS Contribution 419.71 15.07 6.32 6.32 Total: -1.00 -35.48 419.71 -8.55 -44.03 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -9.16 Total: 11.36 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.69 Total: 4.25 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.49 Total: -57.05 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.78 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.87 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.48 -8.55 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271490963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.088 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds