Wall clock time and date at job start Tue Mar 31 2020 20:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47432 * 2 1 4 4 C 1.53007 * 109.47171 * 120.00222 * 2 1 3 5 5 C 1.52997 * 109.46860 * 185.00078 * 4 2 1 6 6 N 1.46902 * 109.46957 * 179.97438 * 5 4 2 7 7 C 1.46903 * 111.00076 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46957 * 179.97438 * 7 6 5 9 9 O 1.21293 * 120.00094 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99799 * 180.02562 * 8 7 6 11 11 C 1.37091 * 119.99939 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00056 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00126 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99588 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99937 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46882 * 90.00276 * 15 13 11 17 17 H 1.48503 * 109.46672 * 209.99924 * 15 13 11 18 18 H 1.48495 * 109.46993 * 329.99560 * 15 13 11 19 19 N 1.46509 * 109.47337 * 239.99871 * 2 1 3 20 20 C 1.34777 * 119.99734 * 84.99861 * 19 2 1 21 21 O 1.21279 * 120.00107 * 0.02562 * 20 19 2 22 22 C 1.50701 * 119.99822 * 180.02562 * 20 19 2 23 23 H 1.08996 * 110.09468 * 334.32183 * 22 20 19 24 24 C 1.54384 * 110.06696 * 212.80889 * 22 20 19 25 25 C 1.54925 * 104.21829 * 217.20412 * 24 22 20 26 26 C 1.54989 * 102.82026 * 37.72868 * 25 24 22 27 27 C 1.53478 * 110.07119 * 95.83765 * 22 20 19 28 28 C 1.52571 * 121.05548 * 263.44917 * 27 22 20 29 29 C 1.52547 * 121.08670 * 335.16451 * 27 22 20 30 30 H 1.09006 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46942 * 300.00040 * 1 2 3 32 32 H 1.09001 * 109.47248 * 60.00383 * 1 2 3 33 33 H 1.08994 * 109.46531 * 304.99520 * 4 2 1 34 34 H 1.08992 * 109.47077 * 65.00125 * 4 2 1 35 35 H 1.09002 * 109.47276 * 299.99719 * 5 4 2 36 36 H 1.08996 * 109.47688 * 59.99926 * 5 4 2 37 37 H 1.00891 * 111.00234 * 303.95686 * 6 5 4 38 38 H 1.08995 * 109.47199 * 300.00258 * 7 6 5 39 39 H 1.08999 * 109.46675 * 60.00345 * 7 6 5 40 40 H 0.97004 * 119.99871 * 0.02562 * 10 8 7 41 41 H 0.97000 * 119.99612 * 179.97438 * 14 13 11 42 42 H 0.96994 * 119.99838 * 265.00291 * 19 2 1 43 43 H 1.09001 * 110.48303 * 98.51790 * 24 22 20 44 44 H 1.09004 * 110.59595 * 335.94465 * 24 22 20 45 45 H 1.09003 * 110.74183 * 279.39399 * 25 24 22 46 46 H 1.08999 * 110.89959 * 156.13466 * 25 24 22 47 47 H 1.08998 * 110.50926 * 203.77997 * 26 25 24 48 48 H 1.08997 * 110.51192 * 81.07043 * 26 25 24 49 49 H 1.08991 * 117.51212 * 217.93768 * 28 27 22 50 50 H 1.08997 * 117.50696 * 3.02526 * 28 27 22 51 51 H 1.09003 * 117.51297 * 357.03123 * 29 27 22 52 52 H 1.09001 * 117.50942 * 142.07703 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0545 -1.3053 2.5134 7 6 5.5181 -1.2228 2.6083 8 6 5.9824 -1.9416 3.8488 9 8 5.1736 -2.4710 4.5815 10 7 7.2963 -1.9962 4.1441 11 6 7.7187 -2.6505 5.2722 12 1 6.9986 -3.1226 5.9242 13 6 9.0733 -2.7063 5.5770 14 7 9.9494 -2.1323 4.7834 15 14 9.6487 -3.5974 7.1146 16 1 9.9169 -5.0214 6.7903 17 1 10.8926 -2.9617 7.6187 18 1 8.5943 -3.5170 8.1571 19 7 2.0184 -0.6907 -1.1962 20 6 2.1471 -0.0183 -2.3572 21 8 1.8590 1.1585 -2.4115 22 6 2.6489 -0.7288 -3.5878 23 1 3.2659 -1.5810 -3.3027 24 6 3.4635 0.2447 -4.4664 25 6 3.1005 -0.1580 -5.9177 26 6 1.5937 -0.5050 -5.8117 27 6 1.4652 -1.1987 -4.4442 28 6 0.9349 -2.6254 -4.3390 29 6 0.0956 -1.4538 -3.8228 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2617 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.9995 -1.0728 0.4259 36 1 3.8532 0.4369 1.3573 37 1 3.6167 -0.9398 3.3456 38 1 5.9659 -1.6871 1.7297 39 1 5.8203 -0.1768 2.6603 40 1 7.9430 -1.5724 3.5583 41 1 10.8949 -2.1709 4.9963 42 1 2.2490 -1.6318 -1.1526 43 1 4.5313 0.1151 -4.2904 44 1 3.1682 1.2758 -4.2715 45 1 3.6760 -1.0287 -6.2322 46 1 3.2576 0.6748 -6.6032 47 1 1.3007 -1.1832 -6.6131 48 1 0.9901 0.4022 -5.8380 49 1 0.6097 -3.1108 -5.2591 50 1 1.3947 -3.2800 -3.5987 51 1 0.0031 -1.3379 -2.7429 52 1 -0.7817 -1.1681 -4.4032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272865826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:43 Heat of formation + Delta-G solvation = -70.362065 kcal Electronic energy + Delta-G solvation = -29046.320044 eV Core-core repulsion = 25045.336798 eV Total energy + Delta-G solvation = -4000.983246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.83891 -38.69857 -38.26145 -36.83166 -35.05001 -34.40558 -33.82748 -31.98579 -31.22360 -29.61414 -29.03725 -26.28156 -26.10793 -24.16802 -22.95486 -22.63100 -21.90317 -20.89260 -20.73879 -19.33814 -19.06870 -17.89286 -17.34775 -16.59434 -16.19498 -16.09138 -15.58672 -15.36659 -14.87366 -14.73775 -14.53918 -14.35078 -13.88224 -13.79509 -13.74499 -13.62620 -13.16484 -13.12076 -12.84168 -12.73498 -12.34528 -12.27128 -11.93529 -11.82019 -11.66311 -11.51212 -11.42990 -11.28428 -11.25932 -11.20943 -11.04693 -10.94615 -10.92366 -10.63272 -10.40078 -10.38764 -10.22445 -9.70252 -9.51753 -9.27686 -8.47755 -8.07708 -7.96739 -6.42403 -3.83268 2.43654 2.89332 3.17372 3.25944 3.31825 3.42051 3.89882 3.97196 4.03544 4.20652 4.24912 4.43893 4.44616 4.64619 4.79395 4.82601 4.86660 4.90369 4.96985 5.06292 5.11786 5.23497 5.24018 5.27832 5.30486 5.34289 5.38002 5.47505 5.51026 5.52607 5.57979 5.59965 5.64867 5.70572 5.73164 5.74760 5.79650 5.81996 5.91624 5.94034 5.98602 6.03905 6.08294 6.26092 6.34246 7.19485 7.30598 7.54522 7.64438 8.05148 8.05567 8.60503 9.17091 9.53547 10.04948 10.75343 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.001855 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.051130 B =15090.965280 C =15916.994679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 N -0.724 5.724 20 C 0.525 3.475 21 O -0.538 6.538 22 C -0.078 4.078 23 H 0.092 0.908 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.087 4.087 27 C -0.117 4.117 28 C -0.165 4.165 29 C -0.171 4.171 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.349 0.651 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.400 0.600 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.097 0.903 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.690 3.870 -21.917 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.105 0.895 4 C -0.163 4.163 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.376 5.376 20 C 0.311 3.689 21 O -0.414 6.414 22 C -0.099 4.099 23 H 0.110 0.890 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.201 4.201 29 C -0.208 4.208 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.168 0.832 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.235 0.765 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.116 0.884 50 H 0.115 0.885 51 H 0.115 0.885 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.213 3.771 -21.707 27.959 hybrid contribution 1.067 0.202 0.745 1.317 sum -16.146 3.973 -20.962 26.756 Atomic orbital electron populations 1.22165 0.95175 1.02173 1.02520 1.20968 0.93952 0.97530 0.83771 0.89473 1.21872 0.95638 1.01956 0.96877 1.21952 0.94509 0.96143 0.94398 1.60079 1.04955 1.59927 1.05253 1.21663 0.88909 0.98758 0.98856 1.19815 0.83412 0.86136 0.88046 1.90519 1.53395 1.50521 1.52358 1.41869 1.05441 1.48907 1.23820 1.19705 0.91994 1.30255 1.00949 0.87914 1.25275 0.95632 0.97814 0.99289 1.69614 1.02527 1.44232 1.37934 0.85847 0.78110 0.79121 0.81149 1.20378 1.20936 1.19424 1.46253 1.67539 1.14122 1.09703 1.20473 0.77089 0.87181 0.84164 1.90671 1.49912 1.16032 1.84795 1.21434 0.96355 0.99169 0.92980 0.88979 1.22358 0.99022 0.99866 0.93730 1.22449 0.95604 1.01241 0.96476 1.21874 0.96978 0.99784 0.93750 1.21522 0.94344 0.98957 0.96956 1.23059 1.03431 0.90372 1.03287 1.23026 0.94056 1.02538 1.01206 0.92369 0.91529 0.92178 0.90250 0.90241 0.91226 0.95571 0.83194 0.89710 0.93931 0.77457 0.91865 0.76496 0.91067 0.89558 0.91255 0.91106 0.91431 0.90951 0.88445 0.88514 0.88490 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 2 C 0.14 1.31 2.58 -67.92 -0.17 1.13 16 3 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 4 C -0.13 -1.19 5.01 -26.73 -0.13 -1.33 16 5 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 6 N -0.67 -10.61 6.13 -115.06 -0.70 -11.32 16 7 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 8 C 0.44 10.45 7.82 -10.98 -0.09 10.37 16 9 O -0.58 -15.89 15.78 5.55 0.09 -15.81 16 10 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 11 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 12 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 15 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 N -0.72 -6.20 4.25 -53.80 -0.23 -6.42 16 20 C 0.52 5.37 5.55 -10.98 -0.06 5.31 16 21 O -0.54 -7.46 15.44 5.56 0.09 -7.38 16 22 C -0.08 -0.64 3.16 -90.80 -0.29 -0.92 16 23 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 24 C -0.11 -0.92 6.32 -24.99 -0.16 -1.08 16 25 C -0.12 -0.79 6.91 -24.66 -0.17 -0.97 16 26 C -0.09 -0.60 6.58 -25.23 -0.17 -0.76 16 27 C -0.12 -0.87 2.26 -154.26 -0.35 -1.22 16 28 C -0.16 -1.03 10.24 -26.91 -0.28 -1.30 16 29 C -0.17 -1.27 9.63 -26.92 -0.26 -1.53 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.35 5.71 8.43 -39.30 -0.33 5.38 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.40 2.80 8.60 -40.82 -0.35 2.45 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.88 6.93 -51.93 -0.36 0.52 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.10 0.78 7.07 -51.93 -0.37 0.42 16 52 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 421.35 15.07 6.35 6.35 Total: -1.00 -32.76 421.35 -10.05 -42.81 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -9.22 Total: 13.80 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.06 Total: 0.21 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.27 Total: -56.04 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.18 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.76 -10.05 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272865826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.551 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds