Wall clock time and date at job start Tue Mar 31 2020 20:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47432 * 2 1 4 4 C 1.53007 * 109.47171 * 120.00222 * 2 1 3 5 5 C 1.52997 * 109.46860 * 185.00078 * 4 2 1 6 6 N 1.46902 * 109.46957 * 179.97438 * 5 4 2 7 7 C 1.46903 * 111.00076 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.46957 * 179.97438 * 7 6 5 9 9 O 1.21293 * 120.00094 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99799 * 180.02562 * 8 7 6 11 11 C 1.37091 * 119.99939 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00056 * 0.02562 * 11 10 8 13 13 C 1.38953 * 120.00126 * 180.02562 * 11 10 8 14 14 N 1.31410 * 119.99588 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99937 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46882 * 90.00276 * 15 13 11 17 17 H 1.48503 * 109.46672 * 209.99924 * 15 13 11 18 18 H 1.48495 * 109.46993 * 329.99560 * 15 13 11 19 19 N 1.46509 * 109.47337 * 239.99871 * 2 1 3 20 20 C 1.34777 * 119.99734 * 84.99861 * 19 2 1 21 21 O 1.21279 * 120.00107 * 0.02562 * 20 19 2 22 22 C 1.50701 * 119.99822 * 180.02562 * 20 19 2 23 23 H 1.08996 * 110.09468 * 334.32183 * 22 20 19 24 24 C 1.54384 * 110.06696 * 212.80889 * 22 20 19 25 25 C 1.54925 * 104.21829 * 217.20412 * 24 22 20 26 26 C 1.54989 * 102.82026 * 37.72868 * 25 24 22 27 27 C 1.53478 * 110.07119 * 95.83765 * 22 20 19 28 28 C 1.52571 * 121.05548 * 263.44917 * 27 22 20 29 29 C 1.52547 * 121.08670 * 335.16451 * 27 22 20 30 30 H 1.09006 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46942 * 300.00040 * 1 2 3 32 32 H 1.09001 * 109.47248 * 60.00383 * 1 2 3 33 33 H 1.08994 * 109.46531 * 304.99520 * 4 2 1 34 34 H 1.08992 * 109.47077 * 65.00125 * 4 2 1 35 35 H 1.09002 * 109.47276 * 299.99719 * 5 4 2 36 36 H 1.08996 * 109.47688 * 59.99926 * 5 4 2 37 37 H 1.00891 * 111.00234 * 303.95686 * 6 5 4 38 38 H 1.08995 * 109.47199 * 300.00258 * 7 6 5 39 39 H 1.08999 * 109.46675 * 60.00345 * 7 6 5 40 40 H 0.97004 * 119.99871 * 0.02562 * 10 8 7 41 41 H 0.97000 * 119.99612 * 179.97438 * 14 13 11 42 42 H 0.96994 * 119.99838 * 265.00291 * 19 2 1 43 43 H 1.09001 * 110.48303 * 98.51790 * 24 22 20 44 44 H 1.09004 * 110.59595 * 335.94465 * 24 22 20 45 45 H 1.09003 * 110.74183 * 279.39399 * 25 24 22 46 46 H 1.08999 * 110.89959 * 156.13466 * 25 24 22 47 47 H 1.08998 * 110.50926 * 203.77997 * 26 25 24 48 48 H 1.08997 * 110.51192 * 81.07043 * 26 25 24 49 49 H 1.08991 * 117.51212 * 217.93768 * 28 27 22 50 50 H 1.08997 * 117.50696 * 3.02526 * 28 27 22 51 51 H 1.09003 * 117.51297 * 357.03123 * 29 27 22 52 52 H 1.09001 * 117.50942 * 142.07703 * 29 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0545 -1.3053 2.5134 7 6 5.5181 -1.2228 2.6083 8 6 5.9824 -1.9416 3.8488 9 8 5.1736 -2.4710 4.5815 10 7 7.2963 -1.9962 4.1441 11 6 7.7187 -2.6505 5.2722 12 1 6.9986 -3.1226 5.9242 13 6 9.0733 -2.7063 5.5770 14 7 9.9494 -2.1323 4.7834 15 14 9.6487 -3.5974 7.1146 16 1 9.9169 -5.0214 6.7903 17 1 10.8926 -2.9617 7.6187 18 1 8.5943 -3.5170 8.1571 19 7 2.0184 -0.6907 -1.1962 20 6 2.1471 -0.0183 -2.3572 21 8 1.8590 1.1585 -2.4115 22 6 2.6489 -0.7288 -3.5878 23 1 3.2659 -1.5810 -3.3027 24 6 3.4635 0.2447 -4.4664 25 6 3.1005 -0.1580 -5.9177 26 6 1.5937 -0.5050 -5.8117 27 6 1.4652 -1.1987 -4.4442 28 6 0.9349 -2.6254 -4.3390 29 6 0.0956 -1.4538 -3.8228 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2617 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.9995 -1.0728 0.4259 36 1 3.8532 0.4369 1.3573 37 1 3.6167 -0.9398 3.3456 38 1 5.9659 -1.6871 1.7297 39 1 5.8203 -0.1768 2.6603 40 1 7.9430 -1.5724 3.5583 41 1 10.8949 -2.1709 4.9963 42 1 2.2490 -1.6318 -1.1526 43 1 4.5313 0.1151 -4.2904 44 1 3.1682 1.2758 -4.2715 45 1 3.6760 -1.0287 -6.2322 46 1 3.2576 0.6748 -6.6032 47 1 1.3007 -1.1832 -6.6131 48 1 0.9901 0.4022 -5.8380 49 1 0.6097 -3.1108 -5.2591 50 1 1.3947 -3.2800 -3.5987 51 1 0.0031 -1.3379 -2.7429 52 1 -0.7817 -1.1681 -4.4032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272865826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:42 Heat of formation + Delta-G solvation = -92.545197 kcal Electronic energy + Delta-G solvation = -29047.281977 eV Core-core repulsion = 25045.336798 eV Total energy + Delta-G solvation = -4001.945179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55613 -40.17974 -39.30997 -37.82966 -36.30751 -35.71670 -34.98783 -33.29939 -32.81116 -30.55912 -29.78917 -27.80209 -26.73151 -25.80721 -23.72692 -23.32045 -22.77153 -21.64595 -21.40997 -21.07126 -19.95303 -19.75770 -18.12642 -17.81891 -17.35082 -17.03523 -16.71075 -16.46108 -16.06918 -15.91818 -15.60585 -15.42064 -15.36243 -15.01107 -14.81811 -14.43056 -14.35242 -13.92005 -13.70885 -13.56858 -13.49854 -13.44241 -13.25851 -12.96786 -12.82478 -12.54134 -12.43118 -12.36651 -12.22130 -12.12866 -12.11605 -11.97359 -11.82398 -11.77430 -11.53817 -11.51337 -11.16512 -11.06970 -10.39376 -10.36845 -10.07080 -10.02723 -9.36617 -8.47398 -5.96344 1.37987 1.41853 1.54697 1.65011 2.03649 2.18526 2.28653 2.86064 2.87412 3.19712 3.40106 3.47445 3.63281 3.82796 3.87991 3.94040 4.02566 4.09070 4.11283 4.28242 4.31386 4.34167 4.41804 4.48475 4.48653 4.51877 4.60722 4.66805 4.67123 4.77426 4.80472 4.83207 4.88869 4.93101 5.00663 5.05136 5.07341 5.13811 5.17374 5.20548 5.23041 5.27178 5.31054 5.40338 5.44966 5.58738 5.86968 6.08144 6.37893 6.58738 6.58928 7.11484 7.29380 7.54843 8.09799 8.69976 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.001855 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.051130 B =15090.965280 C =15916.994679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.068 0.932 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.680 5.680 7 C 0.064 3.936 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.714 5.714 20 C 0.523 3.477 21 O -0.580 6.580 22 C -0.077 4.077 23 H 0.109 0.891 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.087 4.087 27 C -0.127 4.127 28 C -0.148 4.148 29 C -0.183 4.183 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.344 0.656 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.411 0.589 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.109 0.891 50 H 0.105 0.895 51 H 0.088 0.912 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.513 2.772 -22.760 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.312 5.312 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.197 1.197 19 N -0.366 5.366 20 C 0.311 3.689 21 O -0.459 6.459 22 C -0.098 4.098 23 H 0.128 0.872 24 C -0.153 4.153 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.127 4.127 28 C -0.184 4.184 29 C -0.220 4.220 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.163 0.837 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.247 0.753 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.127 0.873 50 H 0.124 0.876 51 H 0.106 0.894 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.029 2.662 -22.574 28.401 hybrid contribution 0.964 0.577 0.989 1.496 sum -16.065 3.239 -21.585 27.101 Atomic orbital electron populations 1.22097 0.94343 1.02776 1.02172 1.20848 0.94498 0.96519 0.83799 0.91370 1.21764 0.93951 1.02301 0.97135 1.22014 0.95907 0.95816 0.92858 1.60101 1.03700 1.61038 1.06352 1.21528 0.90288 0.98951 0.96042 1.20859 0.82432 0.85085 0.89132 1.90487 1.54206 1.52031 1.54160 1.41945 1.06341 1.49215 1.23539 1.19676 0.92381 1.32081 1.02230 0.90238 1.26070 0.95189 0.98085 1.02056 1.69674 1.02945 1.44442 1.39063 0.84910 0.77707 0.78239 0.77381 1.19564 1.19577 1.19732 1.46191 1.66780 1.14509 1.09152 1.20870 0.76346 0.86702 0.84966 1.90654 1.51874 1.17937 1.85464 1.21487 0.96897 0.99375 0.92037 0.87244 1.22353 0.99401 0.98517 0.95038 1.22445 0.95503 1.01901 0.95401 1.21882 0.96995 0.99522 0.94042 1.21584 0.93982 1.00216 0.96941 1.23137 1.01867 0.89655 1.03771 1.23030 0.94255 1.03999 1.00731 0.91243 0.90694 0.93717 0.89763 0.89737 0.90474 0.95462 0.83706 0.87820 0.92044 0.76995 0.91281 0.75269 0.90395 0.92115 0.89936 0.90685 0.89973 0.92312 0.87254 0.87623 0.89384 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 9.48 71.98 0.68 -1.78 16 2 C 0.15 2.58 2.58 44.99 0.12 2.70 16 3 H 0.07 1.49 7.58 -2.39 -0.02 1.47 16 4 C -0.11 -1.97 5.01 30.60 0.15 -1.82 16 5 C 0.06 1.38 5.57 86.30 0.48 1.86 16 6 N -0.68 -20.57 6.13 -517.93 -3.17 -23.74 16 7 C 0.06 2.19 6.17 85.56 0.53 2.72 16 8 C 0.44 20.77 7.82 87.66 0.69 21.46 16 9 O -0.62 -34.34 15.78 -3.07 -0.05 -34.38 16 10 N -0.57 -29.46 5.29 -306.98 -1.62 -31.08 16 11 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 12 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 14 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 15 Si 0.99 42.81 29.55 68.60 2.03 44.83 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 N -0.71 -11.44 4.25 -442.51 -1.88 -13.32 16 20 C 0.52 10.55 5.55 87.66 0.49 11.03 16 21 O -0.58 -16.55 15.44 -3.03 -0.05 -16.60 16 22 C -0.08 -1.17 3.16 -10.91 -0.03 -1.20 16 23 H 0.11 1.26 8.13 -2.39 -0.02 1.24 16 24 C -0.12 -1.83 6.32 31.72 0.20 -1.63 16 25 C -0.12 -1.38 6.91 31.93 0.22 -1.15 16 26 C -0.09 -1.11 6.58 31.57 0.21 -0.90 16 27 C -0.13 -1.72 2.26 -52.02 -0.12 -1.83 16 28 C -0.15 -1.50 10.24 30.48 0.31 -1.19 16 29 C -0.18 -2.54 9.63 30.47 0.29 -2.25 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.59 7.75 -2.39 -0.02 1.57 16 36 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.34 10.97 8.43 -89.70 -0.76 10.22 16 38 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 41 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 42 H 0.41 4.93 8.60 -92.71 -0.80 4.13 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.29 6.93 -2.39 -0.02 1.27 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 47 H 0.08 0.79 8.11 -2.39 -0.02 0.77 16 48 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 50 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.09 1.37 7.07 -2.39 -0.02 1.35 16 52 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -71.35 421.35 -0.32 -71.67 By element: Atomic # 1 Polarization: 45.80 SS G_CDS: -1.36 Total: 44.44 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.50 Total: 7.55 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -6.39 Total: -117.51 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.10 Total: -50.98 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.35 -0.32 -71.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272865826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.879 kcal (2) G-P(sol) polarization free energy of solvation -71.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds