Wall clock time and date at job start Tue Mar 31 2020 20:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 C 1.53003 * 109.47148 * 240.00381 * 2 1 3 5 5 C 1.50702 * 109.47116 * 174.99996 * 4 2 1 6 6 O 1.21281 * 120.00015 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99760 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46768 * 179.97438 * 8 7 5 10 10 C 1.31006 * 119.99642 * 124.99711 * 9 8 7 11 11 C 1.50697 * 119.99760 * 179.97438 * 10 9 8 12 12 N 1.46500 * 109.47155 * 124.99732 * 11 10 9 13 13 C 1.36942 * 120.00222 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99623 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00048 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00231 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99780 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47305 * 89.99904 * 17 15 13 19 19 H 1.48500 * 109.46925 * 209.99719 * 17 15 13 20 20 H 1.48501 * 109.46957 * 329.99269 * 17 15 13 21 21 N 1.46498 * 109.47099 * 120.00188 * 2 1 3 22 22 C 1.34775 * 120.00003 * 274.99975 * 21 2 1 23 23 O 1.21281 * 119.99955 * 0.02562 * 22 21 2 24 24 C 1.50704 * 119.99857 * 179.97438 * 22 21 2 25 25 C 1.55238 * 110.46892 * 294.81226 * 24 22 21 26 26 C 1.54894 * 102.58338 * 203.39217 * 25 24 22 27 27 C 1.54266 * 104.31305 * 37.93170 * 26 25 24 28 28 C 1.53869 * 106.60031 * 336.32486 * 27 26 25 29 29 H 1.08990 * 109.47159 * 299.99656 * 1 2 3 30 30 H 1.09005 * 109.46804 * 59.99630 * 1 2 3 31 31 H 1.09001 * 109.46730 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47241 * 295.00088 * 4 2 1 33 33 H 1.08995 * 109.47327 * 55.00373 * 4 2 1 34 34 H 0.96995 * 119.99794 * 359.97438 * 7 5 4 35 35 H 1.09009 * 109.46605 * 299.99371 * 8 7 5 36 36 H 1.08990 * 109.47631 * 59.99579 * 8 7 5 37 37 H 1.07999 * 120.00105 * 304.99441 * 9 8 7 38 38 H 1.07999 * 120.00252 * 359.97438 * 10 9 8 39 39 H 1.08998 * 109.47301 * 245.00032 * 11 10 9 40 40 H 1.09008 * 109.46857 * 4.99840 * 11 10 9 41 41 H 0.97000 * 120.00327 * 0.02562 * 12 11 10 42 42 H 0.97004 * 120.00233 * 180.02562 * 16 15 13 43 43 H 0.97003 * 119.99782 * 95.00528 * 21 2 1 44 44 H 1.09007 * 110.43017 * 57.46396 * 24 22 21 45 45 H 1.08996 * 110.89448 * 85.10781 * 25 24 22 46 46 H 1.08993 * 110.76342 * 321.62447 * 25 24 22 47 47 H 1.09002 * 110.48891 * 279.18596 * 26 25 24 48 48 H 1.08998 * 110.48494 * 156.67683 * 26 25 24 49 49 H 1.09001 * 110.03084 * 95.60669 * 27 26 25 50 50 H 1.08996 * 110.03108 * 216.98559 * 27 26 25 51 51 H 1.08999 * 110.04012 * 119.28327 * 28 27 26 52 52 H 1.09006 * 110.02998 * 240.67078 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 8 4.1450 -0.0203 -0.4446 7 7 4.2149 -1.1795 -2.3349 8 6 5.6750 -1.0765 -2.3963 9 6 6.1774 -1.7868 -3.6269 10 6 6.9309 -1.1501 -4.4889 11 6 7.4336 -1.8604 -5.7192 12 7 7.0465 -1.1038 -6.9124 13 6 7.3955 -1.5599 -8.1556 14 1 7.9566 -2.4772 -8.2563 15 6 7.0291 -0.8427 -9.2861 16 7 6.3458 0.2754 -9.1634 17 14 7.5047 -1.4654 -10.9819 18 1 6.4337 -2.3530 -11.5017 19 1 7.6815 -0.3124 -11.9009 20 1 8.7772 -2.2256 -10.8912 21 7 2.0183 -0.6906 1.1961 22 6 2.1470 -0.0183 2.3571 23 8 1.8582 1.1583 2.4117 24 6 2.6488 -0.7290 3.5877 25 6 1.6395 -1.8210 4.0335 26 6 1.9687 -1.9910 5.5374 27 6 2.2778 -0.5602 6.0244 28 6 2.7101 0.2422 4.7847 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7714 -1.2058 33 1 1.6055 -0.2616 -2.1370 34 1 3.7326 -1.6546 -3.0295 35 1 5.9637 -0.0262 -2.4392 36 1 6.1094 -1.5367 -1.5089 37 1 5.9162 -2.8207 -3.7981 38 1 7.1917 -0.1161 -4.3179 39 1 8.5199 -1.9386 -5.6751 40 1 6.9990 -2.8590 -5.7652 41 1 6.5428 -0.2797 -6.8220 42 1 6.0894 0.7764 -9.9535 43 1 2.2491 -1.6318 1.1525 44 1 3.6295 -1.1667 3.4010 45 1 1.8103 -2.7520 3.4930 46 1 0.6140 -1.4773 3.8989 47 1 2.8390 -2.6344 5.6671 48 1 1.1109 -2.3990 6.0720 49 1 1.3857 -0.1149 6.4649 50 1 3.0848 -0.5812 6.7567 51 1 2.0280 1.0770 4.6235 52 1 3.7274 0.6114 4.9151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274641136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:56 Heat of formation + Delta-G solvation = -96.789382 kcal Electronic energy + Delta-G solvation = -28209.779360 eV Core-core repulsion = 24207.650139 eV Total energy + Delta-G solvation = -4002.129221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36760 -40.53520 -38.24560 -37.68412 -36.72028 -36.09509 -34.40375 -32.92368 -32.33976 -30.03846 -29.58178 -29.43724 -28.04793 -25.80234 -24.00668 -23.47926 -22.16751 -21.51701 -21.30276 -20.77946 -20.48306 -19.12517 -18.52555 -18.01051 -17.48031 -16.98451 -16.66335 -16.61743 -16.26126 -15.78570 -15.62613 -15.57070 -15.25103 -15.08659 -14.82544 -14.36521 -14.29814 -14.20771 -13.94992 -13.56140 -13.49894 -13.35385 -12.99203 -12.90699 -12.83131 -12.78587 -12.73539 -12.19373 -12.15834 -12.07570 -12.00363 -11.98522 -11.96510 -11.78505 -11.68707 -11.31479 -11.09425 -10.95385 -10.70715 -10.31988 -10.05346 -9.91670 -9.01919 -7.96568 -5.26622 1.06431 1.48534 1.50124 1.58833 1.66753 1.72721 2.28276 2.38867 2.56877 3.37503 3.53183 3.63332 3.65711 3.73818 3.81437 3.85675 4.08797 4.22261 4.23310 4.24128 4.40916 4.46514 4.48389 4.52534 4.58695 4.61467 4.63270 4.68059 4.71086 4.72706 4.79868 4.83657 4.92442 4.95809 5.00493 5.07688 5.09310 5.20935 5.27271 5.30506 5.35954 5.39700 5.46952 5.47275 5.60765 5.66372 5.83698 6.25358 6.56621 6.63861 7.28596 7.31595 7.35073 8.05739 8.29505 9.26814 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.001530 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.419450 B =18290.801634 C =18857.068552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.052 0.948 4 C -0.140 4.140 5 C 0.504 3.496 6 O -0.580 6.580 7 N -0.717 5.717 8 C 0.158 3.842 9 C -0.158 4.158 10 C -0.136 4.136 11 C 0.173 3.827 12 N -0.744 5.744 13 C -0.250 4.250 14 H 0.079 0.921 15 C -0.075 4.075 16 N -0.969 5.969 17 Si 0.976 3.024 18 H -0.284 1.284 19 H -0.296 1.296 20 H -0.269 1.269 21 N -0.703 5.703 22 C 0.519 3.481 23 O -0.591 6.591 24 C -0.113 4.113 25 C -0.105 4.105 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.117 4.117 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.416 0.584 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.028 0.972 40 H 0.036 0.964 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.410 0.590 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.056 0.944 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.804 -10.189 28.610 33.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.180 4.180 5 C 0.292 3.708 6 O -0.459 6.459 7 N -0.369 5.369 8 C 0.035 3.965 9 C -0.177 4.177 10 C -0.155 4.155 11 C 0.048 3.952 12 N -0.387 5.387 13 C -0.382 4.382 14 H 0.097 0.903 15 C -0.267 4.267 16 N -0.620 5.620 17 Si 0.805 3.195 18 H -0.211 1.211 19 H -0.223 1.223 20 H -0.194 1.194 21 N -0.353 5.353 22 C 0.306 3.694 23 O -0.472 6.472 24 C -0.134 4.134 25 C -0.143 4.143 26 C -0.157 4.157 27 C -0.160 4.160 28 C -0.155 4.155 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.157 0.843 33 H 0.149 0.851 34 H 0.253 0.747 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.246 0.754 44 H 0.126 0.874 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.074 0.926 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.470 -9.068 29.129 33.349 hybrid contribution 0.371 0.238 -1.504 1.568 sum -13.099 -8.830 27.625 31.822 Atomic orbital electron populations 1.22103 0.93066 1.03614 1.02422 1.20631 0.94611 0.96305 0.83522 0.92976 1.22088 0.89808 1.05951 1.00170 1.21261 0.91356 0.77567 0.80664 1.90748 1.71388 1.43514 1.40260 1.45993 1.07249 1.56799 1.26892 1.20155 0.80663 0.99219 0.96481 1.22796 0.99130 1.00642 0.95146 1.22999 0.98356 0.99626 0.94523 1.19912 0.97004 0.94035 0.84265 1.42535 1.66861 1.27924 1.01398 1.19686 1.28169 1.05519 0.84817 0.90338 1.25609 1.01564 0.97755 1.01765 1.69826 1.45041 1.17914 1.29211 0.85103 0.78166 0.76802 0.79445 1.21095 1.22287 1.19358 1.45801 1.66562 1.14093 1.08889 1.20966 0.76171 0.86625 0.85588 1.90645 1.52505 1.18263 1.85794 1.22278 1.01657 0.97658 0.91843 1.22539 0.97466 0.97230 0.97060 1.22364 1.02439 0.96271 0.94663 1.22143 1.01490 0.95738 0.96656 1.22063 1.01631 0.98056 0.93742 0.94127 0.90147 0.89837 0.84339 0.85059 0.74737 0.93120 0.90408 0.84852 0.87914 0.95382 0.94653 0.79455 0.93958 0.75423 0.87378 0.88649 0.91699 0.90255 0.90233 0.91830 0.90848 0.92563 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.48 71.98 0.68 -1.29 16 2 C 0.15 2.63 2.13 44.99 0.10 2.73 16 3 H 0.05 1.37 7.39 -2.39 -0.02 1.36 16 4 C -0.14 -1.58 5.24 29.85 0.16 -1.42 16 5 C 0.50 10.08 7.69 87.66 0.67 10.76 16 6 O -0.58 -17.23 15.35 -3.03 -0.05 -17.27 16 7 N -0.72 -12.97 5.55 -466.77 -2.59 -15.56 16 8 C 0.16 3.53 6.11 85.63 0.52 4.05 16 9 C -0.16 -3.73 9.24 25.64 0.24 -3.49 16 10 C -0.14 -4.18 9.24 25.64 0.24 -3.94 16 11 C 0.17 6.68 6.70 85.63 0.57 7.26 16 12 N -0.74 -37.56 5.59 -347.17 -1.94 -39.50 16 13 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 14 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 15 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 16 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 17 Si 0.98 45.37 29.55 68.60 2.03 47.39 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 N -0.70 -11.69 4.21 -442.53 -1.86 -13.55 16 22 C 0.52 11.68 7.10 87.66 0.62 12.30 16 23 O -0.59 -19.02 15.08 -3.03 -0.05 -19.07 16 24 C -0.11 -1.80 3.26 -10.34 -0.03 -1.83 16 25 C -0.11 -1.02 6.34 32.01 0.20 -0.82 16 26 C -0.12 -1.01 6.82 31.67 0.22 -0.80 16 27 C -0.12 -1.47 6.80 31.32 0.21 -1.25 16 28 C -0.12 -2.09 6.19 31.32 0.19 -1.89 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.42 5.49 8.46 -92.71 -0.78 4.70 16 35 H 0.05 1.35 7.80 -2.38 -0.02 1.33 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.13 2.71 7.84 -2.91 -0.02 2.69 16 38 H 0.10 3.29 7.84 -2.91 -0.02 3.26 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 1.30 7.79 -2.38 -0.02 1.28 16 41 H 0.37 20.18 7.66 -92.71 -0.71 19.47 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.41 4.33 8.60 -92.71 -0.80 3.53 16 44 H 0.11 1.52 8.14 -2.38 -0.02 1.51 16 45 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.06 0.74 8.05 -2.39 -0.02 0.72 16 47 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.06 1.31 6.85 -2.39 -0.02 1.30 16 52 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -79.73 425.96 0.35 -79.38 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -1.37 Total: 33.33 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.90 Total: 3.56 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -6.11 Total: -127.32 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.09 Total: -36.34 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -79.73 0.35 -79.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274641136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.413 kcal (2) G-P(sol) polarization free energy of solvation -79.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds