Wall clock time and date at job start Tue Mar 31 2020 20:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46995 * 2 1 4 4 C 1.53004 * 109.47132 * 119.99905 * 2 1 3 5 5 C 1.50708 * 109.46849 * 184.99916 * 4 2 1 6 6 O 1.21276 * 120.00022 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99684 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99817 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47004 * 180.02562 * 8 7 5 10 10 C 1.30999 * 119.99769 * 127.15693 * 9 8 7 11 11 C 1.50700 * 120.00330 * 7.56172 * 10 9 8 12 12 N 1.46494 * 109.47652 * 127.00241 * 11 10 9 13 13 C 1.36935 * 120.00475 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99862 * 0.02562 * 13 12 11 15 15 C 1.38810 * 120.00288 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00424 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99777 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47142 * 89.99907 * 17 15 13 19 19 H 1.48511 * 109.46974 * 209.99729 * 17 15 13 20 20 H 1.48495 * 109.47248 * 329.99482 * 17 15 13 21 21 N 1.46499 * 109.47316 * 240.00074 * 2 1 3 22 22 C 1.34775 * 120.00234 * 84.99585 * 21 2 1 23 23 O 1.21280 * 119.99717 * 0.02562 * 22 21 2 24 24 C 1.50698 * 120.00032 * 180.02562 * 22 21 2 25 25 C 1.55237 * 110.58001 * 294.87421 * 24 22 21 26 26 C 1.54897 * 102.58738 * 203.33784 * 25 24 22 27 27 C 1.54266 * 104.30840 * 37.93476 * 26 25 24 28 28 C 1.53872 * 106.60285 * 336.32046 * 27 26 25 29 29 H 1.08994 * 109.47373 * 59.99576 * 1 2 3 30 30 H 1.08999 * 109.47587 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46778 * 299.99991 * 1 2 3 32 32 H 1.08997 * 109.47261 * 304.99360 * 4 2 1 33 33 H 1.08994 * 109.47250 * 65.00230 * 4 2 1 34 34 H 0.97003 * 120.00010 * 0.02562 * 7 5 4 35 35 H 1.08995 * 109.47450 * 300.00337 * 8 7 5 36 36 H 1.09004 * 109.47257 * 60.00509 * 8 7 5 37 37 H 1.07999 * 119.99779 * 307.15495 * 9 8 7 38 38 H 1.07999 * 120.00261 * 187.55648 * 10 9 8 39 39 H 1.08996 * 109.47384 * 247.00669 * 11 10 9 40 40 H 1.09004 * 109.46616 * 7.00324 * 11 10 9 41 41 H 0.97009 * 119.99649 * 0.02562 * 12 11 10 42 42 H 0.96995 * 120.00018 * 180.02562 * 16 15 13 43 43 H 0.97006 * 120.00069 * 265.00282 * 21 2 1 44 44 H 1.09005 * 110.43545 * 57.46233 * 24 22 21 45 45 H 1.09004 * 110.89746 * 85.05345 * 25 24 22 46 46 H 1.09000 * 110.76950 * 321.57002 * 25 24 22 47 47 H 1.08993 * 110.48318 * 279.19179 * 26 25 24 48 48 H 1.08997 * 110.48611 * 156.67765 * 26 25 24 49 49 H 1.08997 * 110.03446 * 95.60768 * 27 26 25 50 50 H 1.09002 * 110.02894 * 216.99158 * 27 26 25 51 51 H 1.09003 * 110.03101 * 119.28636 * 28 27 26 52 52 H 1.08998 * 110.03732 * 240.67268 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 8 4.1449 -0.0204 0.4445 7 7 4.2149 -1.1796 2.3348 8 6 5.6749 -1.0767 2.3962 9 6 6.1773 -1.7870 3.6267 10 6 7.1132 -2.6975 3.5212 11 6 7.8072 -2.9154 2.2014 12 7 9.2573 -2.8341 2.3929 13 6 10.0994 -3.0018 1.3261 14 1 9.6944 -3.1934 0.3435 15 6 11.4734 -2.9242 1.5075 16 7 12.2828 -3.0859 0.4822 17 14 12.1738 -2.5919 3.2070 18 1 12.4040 -3.8806 3.9082 19 1 13.4606 -1.8619 3.0780 20 1 11.2139 -1.7691 3.9859 21 7 2.0183 -0.6906 -1.1962 22 6 2.1470 -0.0183 -2.3571 23 8 1.8589 1.1586 -2.4115 24 6 2.6488 -0.7288 -3.5877 25 6 4.1192 -1.1866 -3.3920 26 6 4.6311 -1.3099 -4.8487 27 6 3.9705 -0.1271 -5.5864 28 6 2.7101 0.2424 -4.7847 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6054 -0.2617 2.1370 33 1 1.7517 -1.7715 1.2056 34 1 3.7325 -1.6548 3.0294 35 1 6.1093 -1.5369 1.5087 36 1 5.9637 -0.0265 2.4391 37 1 5.7657 -1.5453 4.5955 38 1 7.3874 -3.2921 4.3801 39 1 7.5468 -3.8995 1.8120 40 1 7.4907 -2.1491 1.4937 41 1 9.6211 -2.6623 3.2756 42 1 13.2429 -3.0320 0.6091 43 1 2.2490 -1.6318 -1.1526 44 1 2.0117 -1.5820 -3.8209 45 1 4.1621 -2.1504 -2.8847 46 1 4.6884 -0.4351 -2.8448 47 1 4.3141 -2.2569 -5.2855 48 1 5.7169 -1.2207 -4.8803 49 1 4.6541 0.7212 -5.6192 50 1 3.6961 -0.4246 -6.5985 51 1 2.7822 1.2700 -4.4284 52 1 1.8234 0.1247 -5.4076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274641137.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:59 Heat of formation + Delta-G solvation = -86.064372 kcal Electronic energy + Delta-G solvation = -29213.696317 eV Core-core repulsion = 25212.032168 eV Total energy + Delta-G solvation = -4001.664149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36791 -40.54310 -38.35162 -37.99703 -36.69915 -36.06671 -34.42177 -33.00497 -32.62026 -30.04178 -29.61114 -29.36932 -27.89683 -26.22446 -24.04941 -23.87908 -22.17265 -21.45003 -21.32508 -20.68108 -20.42719 -19.24380 -18.41226 -17.78699 -17.63346 -17.20506 -16.75923 -16.59454 -16.36185 -15.90715 -15.82717 -15.48822 -15.11259 -15.04725 -14.78250 -14.47029 -14.33814 -14.31922 -14.16602 -13.97740 -13.57520 -13.37566 -13.08327 -12.95258 -12.84034 -12.80079 -12.73753 -12.22129 -12.20870 -12.10828 -12.02033 -11.94921 -11.88739 -11.74217 -11.65312 -11.33938 -11.08739 -10.95029 -10.71910 -10.33015 -10.00588 -9.92987 -9.28097 -8.06039 -5.40942 1.03148 1.36290 1.41048 1.48619 1.68396 1.72530 2.29202 2.38444 2.46444 3.25175 3.51550 3.59689 3.68001 3.74325 3.79035 3.84841 3.88646 4.11283 4.22819 4.24484 4.32123 4.42176 4.43757 4.49328 4.55724 4.58661 4.59512 4.66007 4.71347 4.74229 4.80999 4.86919 4.89060 4.91064 5.04862 5.05918 5.09906 5.18468 5.23391 5.32742 5.33688 5.43544 5.43803 5.55558 5.62023 5.69314 5.86300 6.17686 6.57865 6.66026 7.04104 7.33251 7.36193 7.78512 7.99368 9.15474 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.002567 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.890129 B =10903.839328 C =13330.106392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.052 0.948 4 C -0.135 4.135 5 C 0.497 3.503 6 O -0.582 6.582 7 N -0.709 5.709 8 C 0.138 3.862 9 C -0.153 4.153 10 C -0.140 4.140 11 C 0.164 3.836 12 N -0.754 5.754 13 C -0.242 4.242 14 H 0.052 0.948 15 C -0.065 4.065 16 N -0.984 5.984 17 Si 0.961 3.039 18 H -0.272 1.272 19 H -0.296 1.296 20 H -0.250 1.250 21 N -0.706 5.706 22 C 0.519 3.481 23 O -0.589 6.589 24 C -0.108 4.108 25 C -0.110 4.110 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.112 4.112 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.419 0.581 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.368 0.632 42 H 0.259 0.741 43 H 0.408 0.592 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.039 0.961 47 H 0.089 0.911 48 H 0.060 0.940 49 H 0.052 0.948 50 H 0.084 0.916 51 H 0.051 0.949 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.447 0.478 2.415 30.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.046 3.954 3 H 0.070 0.930 4 C -0.175 4.175 5 C 0.285 3.715 6 O -0.461 6.461 7 N -0.363 5.363 8 C 0.014 3.986 9 C -0.172 4.172 10 C -0.160 4.160 11 C 0.039 3.961 12 N -0.400 5.400 13 C -0.373 4.373 14 H 0.070 0.930 15 C -0.257 4.257 16 N -0.634 5.634 17 Si 0.788 3.212 18 H -0.198 1.198 19 H -0.222 1.222 20 H -0.174 1.174 21 N -0.356 5.356 22 C 0.307 3.693 23 O -0.470 6.470 24 C -0.129 4.129 25 C -0.148 4.148 26 C -0.161 4.161 27 C -0.161 4.161 28 C -0.150 4.150 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.257 0.743 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.202 0.798 42 H 0.068 0.932 43 H 0.244 0.756 44 H 0.147 0.853 45 H 0.103 0.897 46 H 0.058 0.942 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.103 0.897 51 H 0.070 0.930 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -30.189 1.695 1.559 30.277 hybrid contribution 1.309 -0.086 0.764 1.518 sum -28.880 1.609 2.322 29.018 Atomic orbital electron populations 1.22098 0.92754 1.03612 1.02592 1.20710 0.94801 0.96336 0.83518 0.92981 1.22079 0.89290 1.05856 1.00282 1.21423 0.91581 0.77729 0.80755 1.90795 1.71506 1.43638 1.40135 1.45832 1.06549 1.56744 1.27133 1.20327 0.81052 0.99756 0.97427 1.22844 0.99606 0.96048 0.98662 1.23061 0.96957 0.97912 0.98025 1.20041 0.82307 0.98507 0.95293 1.42615 1.02120 1.88103 1.07159 1.19027 0.88500 1.40236 0.89507 0.92962 1.25600 0.96149 1.02217 1.01702 1.69897 1.03061 1.58492 1.31946 0.85320 0.77645 0.78511 0.79770 1.19813 1.22250 1.17442 1.45850 1.66509 1.14120 1.09130 1.20895 0.75935 0.86712 0.85747 1.90631 1.52391 1.18035 1.85929 1.22273 0.98317 0.99952 0.92358 1.22466 0.93176 1.01100 0.98030 1.22378 1.00117 0.99471 0.94089 1.22146 0.96145 0.98027 0.99734 1.22041 0.99025 0.98732 0.95166 0.94304 0.89930 0.89567 0.84005 0.84553 0.74315 0.92405 0.92752 0.82817 0.84801 0.95232 0.95071 0.79807 0.93186 0.75600 0.85291 0.89738 0.94234 0.89249 0.92133 0.92912 0.89743 0.93017 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.48 71.98 0.68 -1.08 16 2 C 0.15 2.54 2.13 44.99 0.10 2.64 16 3 H 0.05 1.35 7.39 -2.38 -0.02 1.33 16 4 C -0.14 -1.30 5.24 29.85 0.16 -1.14 16 5 C 0.50 9.97 7.69 87.66 0.67 10.65 16 6 O -0.58 -18.81 15.35 -3.02 -0.05 -18.86 16 7 N -0.71 -11.76 5.55 -466.78 -2.59 -14.35 16 8 C 0.14 3.38 5.76 85.63 0.49 3.87 16 9 C -0.15 -3.10 9.63 25.65 0.25 -2.85 16 10 C -0.14 -3.66 9.63 25.65 0.25 -3.42 16 11 C 0.16 6.19 6.35 85.63 0.54 6.73 16 12 N -0.75 -35.78 5.40 -347.19 -1.87 -37.65 16 13 C -0.24 -14.21 10.47 84.03 0.88 -13.33 16 14 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 15 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 16 N -0.98 -64.22 13.97 21.65 0.30 -63.91 16 17 Si 0.96 45.62 27.73 68.60 1.90 47.53 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 21 N -0.71 -13.23 4.21 -442.54 -1.86 -15.10 16 22 C 0.52 13.06 7.10 87.66 0.62 13.69 16 23 O -0.59 -20.00 15.09 -3.03 -0.05 -20.05 16 24 C -0.11 -2.12 3.25 -10.34 -0.03 -2.15 16 25 C -0.11 -2.38 6.34 32.01 0.20 -2.18 16 26 C -0.12 -2.33 6.82 31.67 0.22 -2.12 16 27 C -0.12 -2.31 6.80 31.32 0.21 -2.10 16 28 C -0.11 -2.35 6.18 31.32 0.19 -2.15 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.42 3.42 8.46 -92.71 -0.78 2.63 16 35 H 0.06 1.82 5.30 -2.39 -0.01 1.80 16 36 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.03 1.27 5.29 -2.38 -0.01 1.25 16 41 H 0.37 16.35 5.52 -92.70 -0.51 15.83 16 42 H 0.26 16.03 8.31 -92.71 -0.77 15.25 16 43 H 0.41 5.56 8.60 -92.70 -0.80 4.76 16 44 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.04 1.15 8.06 -2.39 -0.02 1.13 16 47 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 51 H 0.05 1.42 6.85 -2.39 -0.02 1.40 16 52 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -87.99 418.37 0.46 -87.53 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -1.22 Total: 33.26 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.90 Total: 1.61 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -6.02 Total: -131.01 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.09 Total: -38.91 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.53 kcal Total: -87.99 0.46 -87.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274641137.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.464 kcal (2) G-P(sol) polarization free energy of solvation -87.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds