Wall clock time and date at job start Tue Mar 31 2020 20:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.34783 * 119.99833 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00013 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99711 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.50032 * 300.06517 * 9 7 6 11 11 C 1.53039 * 109.49532 * 60.16432 * 9 7 6 12 12 C 1.53048 * 109.53510 * 181.31445 * 11 9 7 13 13 C 1.53186 * 109.31327 * 298.63138 * 12 11 9 14 14 N 1.46928 * 108.77516 * 54.63375 * 13 12 11 15 15 C 1.34775 * 120.62870 * 126.37040 * 14 13 12 16 16 O 1.21286 * 119.99896 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00330 * 0.02562 * 15 14 13 18 18 C 1.52996 * 117.49983 * 248.75014 * 17 15 14 19 19 C 1.53001 * 117.50131 * 180.08722 * 17 15 14 20 20 C 1.46931 * 118.74229 * 306.39513 * 14 13 12 21 21 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 22 22 C 1.36929 * 119.99833 * 84.99952 * 21 2 1 23 23 H 1.08000 * 120.00309 * 359.97438 * 22 21 2 24 24 C 1.38813 * 119.99926 * 179.97438 * 22 21 2 25 25 N 1.31621 * 119.99705 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00172 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47349 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47224 * 120.00047 * 26 24 22 29 29 H 1.48494 * 109.47541 * 240.00154 * 26 24 22 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 34 34 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 35 35 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 36 36 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 37 37 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.46229 * 301.32870 * 11 9 7 39 39 H 1.08996 * 109.46452 * 61.29552 * 11 9 7 40 40 H 1.09003 * 109.49571 * 178.68356 * 12 11 9 41 41 H 1.08993 * 109.49692 * 58.58295 * 12 11 9 42 42 H 1.09007 * 109.58883 * 294.85022 * 13 12 11 43 43 H 1.08995 * 109.59222 * 174.42567 * 13 12 11 44 44 H 1.09001 * 115.54734 * 34.41530 * 17 15 14 45 45 H 1.09003 * 117.49983 * 359.97438 * 18 17 15 46 46 H 1.09004 * 117.50414 * 145.01680 * 18 17 15 47 47 H 1.08993 * 117.49866 * 214.97633 * 19 17 15 48 48 H 1.08996 * 117.49561 * 359.97438 * 19 17 15 49 49 H 1.09000 * 109.58267 * 293.81672 * 20 14 13 50 50 H 1.09000 * 109.58554 * 173.39069 * 20 14 13 51 51 H 0.97000 * 119.99634 * 265.00306 * 21 2 1 52 52 H 0.97006 * 119.99630 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3398 2.7754 8 8 6.1583 -0.8000 2.0242 9 6 5.8762 -2.0503 4.0059 10 1 5.4406 -1.5921 4.8938 11 6 5.4756 -3.5260 3.9429 12 6 5.9567 -4.2413 5.2075 13 6 7.4843 -4.1580 5.2865 14 7 7.8860 -2.7473 5.2013 15 6 8.6822 -2.2021 6.1422 16 8 9.0064 -1.0362 6.0609 17 6 9.1696 -3.0410 7.2954 18 6 8.6220 -2.7159 8.6865 19 6 10.0687 -2.3635 8.3315 20 6 7.4029 -1.9421 4.0712 21 7 2.0184 -0.6906 -1.1962 22 6 2.1492 -0.0075 -2.3757 23 1 1.8920 1.0403 -2.4243 24 6 2.6125 -0.6618 -3.5089 25 7 2.9256 -1.9388 -3.4498 26 14 2.7903 0.2699 -5.1182 27 1 2.3753 1.6820 -4.9211 28 1 4.2073 0.2280 -5.5606 29 1 1.9302 -0.3595 -6.1522 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8531 0.4370 1.3574 37 1 3.4258 -1.7358 3.1107 38 1 4.3908 -3.6050 3.8715 39 1 5.9316 -3.9891 3.0680 40 1 5.6507 -5.2869 5.1727 41 1 5.5204 -3.7629 6.0843 42 1 7.9239 -4.7138 4.4582 43 1 7.8247 -4.5784 6.2328 44 1 9.3678 -4.0877 7.0645 45 1 7.9095 -1.8950 8.7678 46 1 8.4603 -3.5486 9.3711 47 1 10.8582 -2.9646 8.7825 48 1 10.3081 -1.3112 8.1788 49 1 7.8359 -2.3172 3.1439 50 1 7.6896 -0.9005 4.2158 51 1 2.2491 -1.6318 -1.1525 52 1 3.2497 -2.3959 -4.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274725752.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:49 Heat of formation + Delta-G solvation = -48.996526 kcal Electronic energy + Delta-G solvation = -29324.270885 eV Core-core repulsion = 25324.214118 eV Total energy + Delta-G solvation = -4000.056767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86108 -39.67473 -37.71992 -36.55627 -36.33903 -34.41543 -33.34205 -32.20140 -31.61353 -29.28546 -28.11887 -26.46397 -25.10272 -23.88554 -23.34634 -22.85171 -22.43725 -21.48650 -20.32739 -19.53301 -19.07510 -18.07524 -17.26329 -16.88463 -16.18668 -15.90058 -15.61622 -15.48938 -15.10994 -14.76643 -14.67040 -14.39156 -14.15462 -13.79706 -13.63525 -13.48666 -13.23827 -13.03561 -12.79888 -12.72322 -12.48804 -12.03892 -11.99623 -11.81199 -11.55152 -11.52213 -11.35612 -11.08641 -11.02170 -10.97563 -10.91383 -10.85887 -10.73764 -10.62346 -10.27180 -10.08368 -9.96719 -9.64843 -9.59093 -8.97290 -8.90620 -8.80055 -6.93984 -5.74228 -3.02646 2.17411 2.53818 2.72963 3.35754 3.44211 3.45982 3.51887 3.53788 4.04019 4.25705 4.35851 4.44847 4.45695 4.50985 4.61849 4.62157 4.64397 4.83693 5.04140 5.04481 5.15587 5.19395 5.28980 5.32140 5.38866 5.39671 5.45420 5.49987 5.56274 5.58066 5.61954 5.69447 5.71796 5.82553 5.87956 5.92282 6.06977 6.16150 6.18309 6.34786 6.39701 6.48349 6.67762 6.71118 6.86719 7.06237 7.07207 7.62397 7.73849 7.88595 8.35082 8.44211 9.55768 10.12226 10.46839 11.48486 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.002003 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.796016 B =13978.466203 C =14444.610886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.726 5.726 7 C 0.515 3.485 8 O -0.533 6.533 9 C -0.120 4.120 10 H 0.098 0.902 11 C -0.114 4.114 12 C -0.132 4.132 13 C 0.103 3.897 14 N -0.609 5.609 15 C 0.544 3.456 16 O -0.538 6.538 17 C -0.196 4.196 18 C -0.152 4.152 19 C -0.148 4.148 20 C 0.131 3.869 21 N -0.723 5.723 22 C -0.236 4.236 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -8.379 27.385 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.001 4.001 6 N -0.377 5.377 7 C 0.300 3.700 8 O -0.409 6.409 9 C -0.142 4.142 10 H 0.116 0.884 11 C -0.151 4.151 12 C -0.170 4.170 13 C -0.020 4.020 14 N -0.342 5.342 15 C 0.332 3.668 16 O -0.415 6.415 17 C -0.217 4.217 18 C -0.189 4.189 19 C -0.186 4.186 20 C 0.009 3.991 21 N -0.365 5.365 22 C -0.368 4.368 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.143 0.857 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.099 0.901 50 H 0.118 0.882 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.647 -7.213 26.620 28.620 hybrid contribution -0.361 -0.274 -0.806 0.924 sum 7.286 -7.487 25.815 27.848 Atomic orbital electron populations 1.22423 0.99141 1.00801 0.99964 1.20159 0.91872 0.95610 0.86042 0.93289 1.22054 0.93929 1.01731 0.99316 1.21470 0.94380 0.97199 0.87098 1.46106 1.07092 1.56967 1.27557 1.20290 0.82641 0.80454 0.86629 1.90761 1.55223 1.45520 1.49432 1.21653 0.97679 0.97220 0.97686 0.88365 1.21549 1.01834 0.92915 0.98845 1.21915 0.95144 1.01552 0.98429 1.21846 0.95437 0.81609 1.03063 1.48028 1.49345 1.11649 1.25153 1.19687 0.77825 0.87110 0.82164 1.90715 1.57270 1.17173 1.76315 1.22221 1.08442 1.00736 0.90291 1.22949 0.97889 1.03756 0.94334 1.22981 0.93450 1.02623 0.99525 1.21371 0.91266 0.97975 0.88528 1.42448 1.78075 1.10627 1.05353 1.19269 1.36300 0.93880 0.87315 0.91152 1.24729 1.02208 0.95987 0.98074 1.69667 1.51027 1.08663 1.28749 0.86143 0.77317 0.78805 0.84090 1.20584 1.21884 1.21991 0.94589 0.92725 0.93542 0.91990 0.91645 0.89682 0.91836 0.77135 0.90705 0.90649 0.89949 0.91132 0.90921 0.89300 0.85724 0.88242 0.87722 0.87866 0.87359 0.90132 0.88198 0.78318 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 2 C 0.17 3.30 2.89 -67.93 -0.20 3.10 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -1.97 4.87 -26.73 -0.13 -2.10 16 5 C 0.12 1.99 5.56 -4.04 -0.02 1.97 16 6 N -0.73 -9.38 5.44 -60.29 -0.33 -9.71 16 7 C 0.52 7.37 7.15 -10.98 -0.08 7.29 16 8 O -0.53 -10.27 15.92 5.56 0.09 -10.19 16 9 C -0.12 -1.23 2.68 -91.65 -0.25 -1.47 16 10 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 11 C -0.11 -0.87 5.08 -26.69 -0.14 -1.00 16 12 C -0.13 -0.71 6.08 -26.61 -0.16 -0.87 16 13 C 0.10 0.62 6.30 -3.71 -0.02 0.59 16 14 N -0.61 -5.82 2.97 -172.76 -0.51 -6.33 16 15 C 0.54 5.96 7.48 -10.99 -0.08 5.87 16 16 O -0.54 -8.16 15.67 5.55 0.09 -8.08 16 17 C -0.20 -1.39 4.96 -91.77 -0.45 -1.85 16 18 C -0.15 -0.87 10.24 -26.69 -0.27 -1.14 16 19 C -0.15 -0.99 10.05 -26.69 -0.27 -1.26 16 20 C 0.13 1.56 5.07 -3.71 -0.02 1.54 16 21 N -0.72 -17.62 4.57 -53.42 -0.24 -17.86 16 22 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 26 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.75 7.75 -51.93 -0.40 1.35 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.40 3.73 7.88 -40.82 -0.32 3.41 16 38 H 0.07 0.49 7.54 -51.93 -0.39 0.10 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.35 5.68 -51.93 -0.29 0.06 16 44 H 0.12 0.60 6.82 -51.93 -0.35 0.24 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.11 0.93 7.67 -51.93 -0.40 0.53 16 49 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 50 H 0.10 1.45 7.00 -51.93 -0.36 1.09 16 51 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 52 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 416.13 15.07 6.27 6.27 Total: -1.00 -35.42 416.13 -10.06 -45.49 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -9.14 Total: 9.18 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.98 Total: 1.02 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.36 Total: -61.43 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.18 Total: -18.26 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.42 -10.06 -45.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274725752.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.512 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds