Wall clock time and date at job start Tue Mar 31 2020 20:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.34783 * 119.99833 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00013 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.99711 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.50032 * 300.06517 * 9 7 6 11 11 C 1.53039 * 109.49532 * 60.16432 * 9 7 6 12 12 C 1.53048 * 109.53510 * 181.31445 * 11 9 7 13 13 C 1.53186 * 109.31327 * 298.63138 * 12 11 9 14 14 N 1.46928 * 108.77516 * 54.63375 * 13 12 11 15 15 C 1.34775 * 120.62870 * 126.37040 * 14 13 12 16 16 O 1.21286 * 119.99896 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00330 * 0.02562 * 15 14 13 18 18 C 1.52996 * 117.49983 * 248.75014 * 17 15 14 19 19 C 1.53001 * 117.50131 * 180.08722 * 17 15 14 20 20 C 1.46931 * 118.74229 * 306.39513 * 14 13 12 21 21 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 22 22 C 1.36929 * 119.99833 * 84.99952 * 21 2 1 23 23 H 1.08000 * 120.00309 * 359.97438 * 22 21 2 24 24 C 1.38813 * 119.99926 * 179.97438 * 22 21 2 25 25 N 1.31621 * 119.99705 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00172 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47349 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.47224 * 120.00047 * 26 24 22 29 29 H 1.48494 * 109.47541 * 240.00154 * 26 24 22 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 34 34 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 35 35 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 36 36 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 37 37 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.46229 * 301.32870 * 11 9 7 39 39 H 1.08996 * 109.46452 * 61.29552 * 11 9 7 40 40 H 1.09003 * 109.49571 * 178.68356 * 12 11 9 41 41 H 1.08993 * 109.49692 * 58.58295 * 12 11 9 42 42 H 1.09007 * 109.58883 * 294.85022 * 13 12 11 43 43 H 1.08995 * 109.59222 * 174.42567 * 13 12 11 44 44 H 1.09001 * 115.54734 * 34.41530 * 17 15 14 45 45 H 1.09003 * 117.49983 * 359.97438 * 18 17 15 46 46 H 1.09004 * 117.50414 * 145.01680 * 18 17 15 47 47 H 1.08993 * 117.49866 * 214.97633 * 19 17 15 48 48 H 1.08996 * 117.49561 * 359.97438 * 19 17 15 49 49 H 1.09000 * 109.58267 * 293.81672 * 20 14 13 50 50 H 1.09000 * 109.58554 * 173.39069 * 20 14 13 51 51 H 0.97000 * 119.99634 * 265.00306 * 21 2 1 52 52 H 0.97006 * 119.99630 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3398 2.7754 8 8 6.1583 -0.8000 2.0242 9 6 5.8762 -2.0503 4.0059 10 1 5.4406 -1.5921 4.8938 11 6 5.4756 -3.5260 3.9429 12 6 5.9567 -4.2413 5.2075 13 6 7.4843 -4.1580 5.2865 14 7 7.8860 -2.7473 5.2013 15 6 8.6822 -2.2021 6.1422 16 8 9.0064 -1.0362 6.0609 17 6 9.1696 -3.0410 7.2954 18 6 8.6220 -2.7159 8.6865 19 6 10.0687 -2.3635 8.3315 20 6 7.4029 -1.9421 4.0712 21 7 2.0184 -0.6906 -1.1962 22 6 2.1492 -0.0075 -2.3757 23 1 1.8920 1.0403 -2.4243 24 6 2.6125 -0.6618 -3.5089 25 7 2.9256 -1.9388 -3.4498 26 14 2.7903 0.2699 -5.1182 27 1 2.3753 1.6820 -4.9211 28 1 4.2073 0.2280 -5.5606 29 1 1.9302 -0.3595 -6.1522 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -0.2617 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8531 0.4370 1.3574 37 1 3.4258 -1.7358 3.1107 38 1 4.3908 -3.6050 3.8715 39 1 5.9316 -3.9891 3.0680 40 1 5.6507 -5.2869 5.1727 41 1 5.5204 -3.7629 6.0843 42 1 7.9239 -4.7138 4.4582 43 1 7.8247 -4.5784 6.2328 44 1 9.3678 -4.0877 7.0645 45 1 7.9095 -1.8950 8.7678 46 1 8.4603 -3.5486 9.3711 47 1 10.8582 -2.9646 8.7825 48 1 10.3081 -1.3112 8.1788 49 1 7.8359 -2.3172 3.1439 50 1 7.6896 -0.9005 4.2158 51 1 2.2491 -1.6318 -1.1525 52 1 3.2497 -2.3959 -4.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274725752.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:48 Heat of formation + Delta-G solvation = -73.833419 kcal Electronic energy + Delta-G solvation = -29325.347894 eV Core-core repulsion = 25324.214118 eV Total energy + Delta-G solvation = -4001.133775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72977 -40.74428 -38.58276 -38.04213 -37.00874 -35.89800 -34.38652 -33.88569 -32.35809 -31.01057 -29.60257 -27.24833 -26.06338 -25.62347 -24.32352 -23.51065 -23.30705 -22.37730 -21.62500 -20.83107 -19.77988 -19.28667 -18.80283 -17.92612 -17.16688 -16.97754 -16.82483 -16.52919 -16.30265 -15.86151 -15.54785 -15.43884 -15.31022 -15.18963 -14.80801 -14.74493 -14.21093 -14.07865 -14.00369 -13.73529 -13.56815 -13.44081 -13.24684 -12.86946 -12.64560 -12.61247 -12.44021 -12.28341 -12.22785 -12.13629 -12.10899 -11.98687 -11.69367 -11.63217 -11.60030 -11.51602 -11.38194 -10.99476 -10.94687 -10.75186 -10.12385 -9.76489 -8.98027 -7.93905 -5.20054 1.39900 1.44195 1.45960 1.54690 1.55995 1.73287 2.28080 2.55833 2.90914 3.38430 3.40415 3.53837 3.72013 3.76766 3.83695 3.91381 3.98335 3.99968 4.04741 4.07711 4.17037 4.20696 4.25875 4.37038 4.48828 4.59995 4.66635 4.72091 4.75690 4.76726 4.77471 4.87807 4.89020 4.92596 5.02430 5.04036 5.06885 5.08532 5.11283 5.21923 5.23988 5.35139 5.39701 5.42766 5.44623 5.53763 5.61711 6.29677 6.33512 6.53238 7.07935 7.23773 7.35663 8.13771 8.35068 9.29729 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.002003 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.796016 B =13978.466203 C =14444.610886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.039 0.961 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.708 5.708 7 C 0.510 3.490 8 O -0.592 6.592 9 C -0.103 4.103 10 H 0.118 0.882 11 C -0.112 4.112 12 C -0.123 4.123 13 C 0.094 3.906 14 N -0.604 5.604 15 C 0.532 3.468 16 O -0.595 6.595 17 C -0.198 4.198 18 C -0.133 4.133 19 C -0.159 4.159 20 C 0.133 3.867 21 N -0.734 5.734 22 C -0.231 4.231 23 H 0.073 0.927 24 C -0.079 4.079 25 N -0.968 5.968 26 Si 0.965 3.035 27 H -0.267 1.267 28 H -0.299 1.299 29 H -0.292 1.292 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.418 0.582 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.120 0.880 44 H 0.157 0.843 45 H 0.085 0.915 46 H 0.139 0.861 47 H 0.129 0.871 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.372 0.628 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -10.294 30.631 32.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.360 5.360 7 C 0.296 3.704 8 O -0.472 6.472 9 C -0.125 4.125 10 H 0.136 0.864 11 C -0.150 4.150 12 C -0.161 4.161 13 C -0.027 4.027 14 N -0.335 5.335 15 C 0.323 3.677 16 O -0.476 6.476 17 C -0.218 4.218 18 C -0.170 4.170 19 C -0.197 4.197 20 C 0.009 3.991 21 N -0.375 5.375 22 C -0.363 4.363 23 H 0.091 0.909 24 C -0.271 4.271 25 N -0.620 5.620 26 Si 0.795 3.205 27 H -0.192 1.192 28 H -0.227 1.227 29 H -0.220 1.220 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.255 0.745 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.129 0.871 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.175 0.825 45 H 0.103 0.897 46 H 0.157 0.843 47 H 0.147 0.853 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.204 0.796 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.881 -9.148 29.933 31.847 hybrid contribution 0.171 0.391 -1.757 1.808 sum 6.053 -8.757 28.176 30.120 Atomic orbital electron populations 1.22253 0.96996 1.01138 1.00830 1.20474 0.93253 0.95126 0.85780 0.94247 1.21903 0.92251 1.02246 0.98822 1.21103 0.95510 0.95946 0.86662 1.45855 1.07209 1.56251 1.26653 1.21105 0.82462 0.79575 0.87210 1.90739 1.56740 1.48029 1.51728 1.21568 0.96082 0.99040 0.95820 0.86422 1.21620 1.02987 0.90479 0.99936 1.21914 0.94177 1.02897 0.97117 1.22218 0.96370 0.79135 1.04929 1.48134 1.48672 1.12943 1.23782 1.20522 0.77210 0.86892 0.83080 1.90689 1.59312 1.19862 1.77741 1.22286 1.09059 1.01350 0.89138 1.23059 0.96422 1.04163 0.93387 1.23041 0.95113 1.01486 1.00039 1.21078 0.92707 0.96425 0.88845 1.42635 1.78354 1.10239 1.06242 1.19627 1.34166 0.94059 0.88483 0.90921 1.25480 1.03428 0.96931 1.01302 1.69808 1.52981 1.10070 1.29124 0.85179 0.76558 0.78310 0.80421 1.19152 1.22680 1.21955 0.90606 0.94961 0.93436 0.87690 0.90611 0.94569 0.93548 0.74482 0.88802 0.92063 0.87129 0.90021 0.90576 0.86205 0.82517 0.89657 0.84299 0.85323 0.90327 0.92109 0.91858 0.79571 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.49 71.98 0.68 -4.24 16 2 C 0.16 6.01 2.89 44.99 0.13 6.14 16 3 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 4 C -0.11 -3.17 4.87 30.59 0.15 -3.02 16 5 C 0.13 4.38 5.56 86.38 0.48 4.86 16 6 N -0.71 -17.75 5.44 -463.05 -2.52 -20.27 16 7 C 0.51 14.99 7.15 87.66 0.63 15.62 16 8 O -0.59 -24.58 15.92 -3.03 -0.05 -24.63 16 9 C -0.10 -2.06 2.68 -11.46 -0.03 -2.09 16 10 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 11 C -0.11 -1.45 5.08 30.62 0.16 -1.30 16 12 C -0.12 -0.82 6.08 30.67 0.19 -0.63 16 13 C 0.09 0.85 6.30 86.36 0.54 1.39 16 14 N -0.60 -11.26 2.97 -818.89 -2.43 -13.69 16 15 C 0.53 11.71 7.48 87.66 0.66 12.36 16 16 O -0.59 -19.41 15.67 -3.05 -0.05 -19.46 16 17 C -0.20 -2.38 4.96 -11.54 -0.06 -2.44 16 18 C -0.13 -1.15 10.24 30.62 0.31 -0.84 16 19 C -0.16 -1.93 10.05 30.62 0.31 -1.62 16 20 C 0.13 3.38 5.07 86.36 0.44 3.81 16 21 N -0.73 -36.28 4.57 -322.93 -1.48 -37.76 16 22 C -0.23 -12.97 9.93 84.04 0.83 -12.13 16 23 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 24 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 25 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 26 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 28 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 29 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 1.57 7.75 -2.39 -0.02 1.55 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 6.70 7.88 -92.71 -0.73 5.96 16 38 H 0.09 0.89 7.54 -2.39 -0.02 0.87 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.12 0.38 5.68 -2.39 -0.01 0.37 16 44 H 0.16 0.85 6.82 -2.39 -0.02 0.83 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.14 0.29 8.14 -2.38 -0.02 0.27 16 47 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 49 H 0.06 1.74 7.95 -2.39 -0.02 1.72 16 50 H 0.06 2.06 7.00 -2.39 -0.02 2.04 16 51 H 0.37 19.81 7.80 -92.71 -0.72 19.08 16 52 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -85.09 416.13 1.13 -83.97 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -0.54 Total: 30.47 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.88 Total: 11.69 kcal Atomic # 7 Polarization: -125.69 SS G_CDS: -6.15 Total: -131.84 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.10 Total: -44.08 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -85.09 1.13 -83.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274725752.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.133 kcal (2) G-P(sol) polarization free energy of solvation -85.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds