Wall clock time and date at job start Tue Mar 31 2020 20:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09011 * 109.47068 * 2 1 4 4 N 1.46500 * 109.47393 * 240.00027 * 2 1 3 5 5 C 1.36940 * 119.99915 * 84.99613 * 4 2 1 6 6 H 1.07999 * 120.00331 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99883 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00418 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47240 * 89.99994 * 9 7 5 11 11 H 1.48500 * 109.47186 * 210.00022 * 9 7 5 12 12 H 1.48502 * 109.47296 * 330.00040 * 9 7 5 13 13 C 1.52999 * 109.47400 * 119.99645 * 2 1 3 14 14 H 1.08996 * 109.47469 * 185.00063 * 13 2 1 15 15 C 1.53003 * 109.46917 * 65.00644 * 13 2 1 16 16 N 1.46497 * 109.47017 * 305.00717 * 13 2 1 17 17 C 1.34780 * 119.99566 * 205.00005 * 16 13 2 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 13 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 13 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47466 * 179.97438 * 20 19 17 22 22 N 1.30254 * 125.61758 * 90.02429 * 21 20 19 23 23 C 1.34482 * 108.70099 * 179.97438 * 22 21 20 24 24 C 1.34332 * 107.66598 * 359.97438 * 23 22 21 25 25 C 1.50705 * 126.43817 * 180.02562 * 24 23 22 26 26 C 1.52996 * 109.46937 * 60.00302 * 25 24 23 27 27 C 1.52998 * 109.46422 * 180.02562 * 25 24 23 28 28 C 1.52997 * 109.47214 * 299.99976 * 25 24 23 29 29 O 1.33963 * 125.62102 * 269.71993 * 21 20 19 30 30 H 1.09007 * 109.47603 * 60.00363 * 1 2 3 31 31 H 1.09007 * 109.46589 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47437 * 299.99531 * 1 2 3 33 33 H 0.96994 * 120.00520 * 264.99721 * 4 2 1 34 34 H 0.96999 * 120.00776 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.46570 * 299.99863 * 15 13 2 36 36 H 1.09000 * 109.47614 * 59.99489 * 15 13 2 37 37 H 1.08998 * 109.47302 * 180.02562 * 15 13 2 38 38 H 0.96995 * 120.00423 * 24.99311 * 16 13 2 39 39 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 40 40 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 41 41 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 42 42 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 43 43 H 1.07999 * 126.16321 * 180.02562 * 23 22 21 44 44 H 1.08994 * 109.47722 * 59.99977 * 26 25 24 45 45 H 1.09004 * 109.46972 * 179.97438 * 26 25 24 46 46 H 1.09001 * 109.47186 * 299.98960 * 26 25 24 47 47 H 1.08996 * 109.47523 * 59.99986 * 27 25 24 48 48 H 1.09004 * 109.46527 * 180.02562 * 27 25 24 49 49 H 1.09004 * 109.47442 * 299.99371 * 27 25 24 50 50 H 1.08999 * 109.46952 * 59.99963 * 28 25 24 51 51 H 1.08997 * 109.47217 * 180.02562 * 28 25 24 52 52 H 1.09005 * 109.46898 * 300.00356 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0074 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9264 -1.9384 -3.4497 9 14 2.7914 0.2704 -5.1179 10 1 4.1536 0.8557 -5.2021 11 1 2.5816 -0.6609 -6.2555 12 1 1.7812 1.3574 -5.1754 13 6 2.0400 -0.7212 1.2493 14 1 3.1263 -0.6442 1.2952 15 6 1.6354 -2.1954 1.1880 16 7 1.4558 -0.1036 2.4423 17 6 2.0912 -0.1937 3.6275 18 8 3.1464 -0.7863 3.7064 19 6 1.4900 0.4411 4.8550 20 6 2.4037 0.1933 6.0568 21 6 1.8028 0.8286 7.2842 22 7 0.9806 0.2501 8.1125 23 6 0.6601 1.1243 9.0829 24 6 1.3131 2.2708 8.8307 25 6 1.2577 3.5321 9.6536 26 6 1.7513 3.2380 11.0716 27 6 2.1493 4.5981 9.0135 28 6 -0.1841 4.0409 9.7107 29 8 2.0307 2.0794 7.7063 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 3.2498 -2.3957 -4.2417 35 1 0.5490 -2.2724 1.1421 36 1 2.0699 -2.6550 0.3002 37 1 1.9983 -2.7092 2.0781 38 1 0.6117 0.3702 2.3794 39 1 1.3835 1.5139 4.6941 40 1 0.5103 0.0036 5.0475 41 1 2.5098 -0.8795 6.2175 42 1 3.3835 0.6304 5.8647 43 1 -0.0021 0.9378 9.9153 44 1 2.7784 2.8756 11.0310 45 1 1.7117 4.1504 11.6666 46 1 1.1158 2.4788 11.5273 47 1 1.7973 4.8075 8.0034 48 1 2.1095 5.5103 9.6089 49 1 3.1765 4.2359 8.9725 50 1 -0.8195 3.2816 10.1664 51 1 -0.2241 4.9534 10.3055 52 1 -0.5357 4.2504 8.7004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275421975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:30 Heat of formation + Delta-G solvation = -25.524626 kcal Electronic energy + Delta-G solvation = -28827.565485 eV Core-core repulsion = 24828.526536 eV Total energy + Delta-G solvation = -3999.038949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.65369 -39.82049 -37.57649 -37.02051 -35.06224 -33.93799 -33.82076 -31.80574 -29.76462 -28.85384 -28.21223 -27.85544 -27.83983 -25.55156 -24.34889 -23.14187 -22.96819 -21.51070 -20.25789 -20.04118 -19.18874 -17.72054 -17.40800 -16.94499 -16.70616 -15.92809 -15.50172 -15.31553 -14.76184 -14.66273 -14.55305 -14.31744 -14.06075 -13.76963 -13.73446 -13.44853 -13.13663 -12.91113 -12.78669 -12.69877 -12.50292 -12.41968 -12.23651 -12.08560 -11.94392 -11.63547 -11.60473 -11.51868 -11.47323 -11.40743 -11.29490 -10.95505 -10.82858 -10.68838 -10.47693 -10.26797 -9.98768 -9.83590 -9.62454 -8.95689 -8.93252 -8.80960 -7.01425 -5.79313 -3.08897 1.15495 2.29045 2.41153 2.73041 3.27543 3.42422 3.47595 3.49080 3.80059 4.11027 4.30271 4.34614 4.55449 4.57898 4.60030 4.74410 4.85388 4.93353 5.04674 5.05616 5.20684 5.22874 5.26748 5.32071 5.34345 5.37575 5.45986 5.48284 5.51844 5.56636 5.62456 5.64797 5.69297 5.70728 5.76878 5.83006 5.84580 6.05080 6.07059 6.15478 6.29183 6.39814 6.46983 6.63313 6.71113 6.91292 7.06794 7.49406 7.66238 7.67604 8.34396 8.39486 9.50433 10.05919 10.40675 11.43216 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.001726 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.195336 B =16217.300841 C =16716.076105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.135 3.865 14 H 0.088 0.912 15 C -0.159 4.159 16 N -0.718 5.718 17 C 0.514 3.486 18 O -0.542 6.542 19 C -0.138 4.138 20 C -0.007 4.007 21 C 0.192 3.808 22 N -0.479 5.479 23 C -0.040 4.040 24 C -0.037 4.037 25 C 0.018 3.982 26 C -0.140 4.140 27 C -0.145 4.145 28 C -0.140 4.140 29 O -0.195 6.195 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.398 0.602 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.179 0.821 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.070 0.930 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 11.350 29.640 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.031 3.969 14 H 0.106 0.894 15 C -0.217 4.217 16 N -0.371 5.371 17 C 0.299 3.701 18 O -0.419 6.419 19 C -0.179 4.179 20 C -0.045 4.045 21 C -0.014 4.014 22 N -0.207 5.207 23 C -0.178 4.178 24 C -0.090 4.090 25 C 0.018 3.982 26 C -0.198 4.198 27 C -0.203 4.203 28 C -0.197 4.197 29 O -0.081 6.081 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.197 0.803 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.027 10.436 29.431 31.803 hybrid contribution -0.179 1.024 -0.854 1.345 sum -6.206 11.460 28.577 31.409 Atomic orbital electron populations 1.22538 0.99344 1.01280 0.99713 1.20363 0.92161 0.95572 0.86213 0.93100 1.42451 1.78208 1.10796 1.04827 1.19221 1.36911 0.93931 0.87171 0.91140 1.24744 1.01953 0.95991 0.98110 1.69652 1.50598 1.08660 1.29001 0.86187 0.77794 0.78567 0.83584 1.21704 1.21773 1.20796 1.21343 0.99042 0.92893 0.83653 0.89365 1.22140 1.01494 0.95811 1.02301 1.46250 1.25780 1.56588 1.08433 1.20338 0.84975 0.80259 0.84514 1.90724 1.22556 1.43020 1.85596 1.21636 1.00826 1.03040 0.92415 1.19809 0.98451 1.01772 0.84473 1.26298 0.96903 0.79596 0.98613 1.70478 1.13803 1.32509 1.03931 1.22973 1.04394 0.89701 1.00773 1.23373 0.97549 0.99271 0.88806 1.19129 0.97616 0.88440 0.93056 1.21936 1.01762 1.02448 0.93610 1.21879 0.99551 0.97754 1.01077 1.21935 0.93484 1.01535 1.02792 1.84403 1.55652 1.32890 1.35197 0.92412 0.92787 0.94880 0.77763 0.93427 0.92560 0.90522 0.93058 0.76605 0.88506 0.88102 0.86694 0.88019 0.80348 0.92081 0.91148 0.91876 0.91940 0.91558 0.92002 0.91875 0.91147 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.01 37.15 0.33 -2.44 16 2 C 0.17 3.17 2.93 -67.93 -0.20 2.97 16 3 H 0.05 0.99 8.08 -51.92 -0.42 0.57 16 4 N -0.72 -17.45 5.03 -53.43 -0.27 -17.72 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 9 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.14 2.28 2.62 -67.93 -0.18 2.10 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 15 C -0.16 -2.67 9.00 37.16 0.33 -2.34 16 16 N -0.72 -9.45 4.99 -53.81 -0.27 -9.72 16 17 C 0.51 6.80 7.79 -10.98 -0.09 6.72 16 18 O -0.54 -9.24 15.64 5.56 0.09 -9.16 16 19 C -0.14 -1.31 5.68 -27.88 -0.16 -1.47 16 20 C -0.01 -0.07 5.13 -27.89 -0.14 -0.21 16 21 C 0.19 2.11 7.60 -12.95 -0.10 2.01 16 22 N -0.48 -5.66 11.29 -11.10 -0.13 -5.78 16 23 C -0.04 -0.38 11.24 -17.77 -0.20 -0.58 16 24 C -0.04 -0.33 5.70 -35.68 -0.20 -0.53 16 25 C 0.02 0.11 0.93 -155.66 -0.15 -0.04 16 26 C -0.14 -0.66 8.35 37.16 0.31 -0.35 16 27 C -0.15 -0.86 8.06 37.16 0.30 -0.56 16 28 C -0.14 -0.66 8.35 37.16 0.31 -0.35 16 29 O -0.19 -2.08 10.24 5.38 0.06 -2.02 16 30 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.05 0.90 6.57 -51.93 -0.34 0.56 16 32 H 0.03 0.42 6.29 -51.93 -0.33 0.09 16 33 H 0.39 9.94 5.77 -40.82 -0.24 9.70 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16 36 H 0.08 1.44 6.29 -51.93 -0.33 1.12 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 4.25 6.58 -40.82 -0.27 3.98 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 1.21 8.10 -51.93 -0.42 0.79 16 42 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 43 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.06 0.27 8.02 -51.93 -0.42 -0.15 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 0.27 8.02 -51.93 -0.42 -0.15 16 51 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 52 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 418.67 15.07 6.31 6.31 Total: -1.00 -33.04 418.67 -7.52 -40.56 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.95 Total: 9.60 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.07 Total: -2.16 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.06 Total: -60.28 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.14 Total: -11.18 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.04 -7.52 -40.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275421975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.038 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds