Wall clock time and date at job start Tue Mar 31 2020 20:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09012 * 109.47041 * 2 1 4 4 N 1.46898 * 109.47173 * 119.99795 * 2 1 3 5 5 C 1.46896 * 111.00475 * 274.99903 * 4 2 1 6 6 C 1.50700 * 109.47410 * 180.02562 * 5 4 2 7 7 O 1.21294 * 119.99515 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00206 * 180.02562 * 6 5 4 9 9 C 1.37094 * 120.00142 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99796 * 0.02562 * 9 8 6 11 11 C 1.38954 * 119.99944 * 179.97438 * 9 8 6 12 12 N 1.31409 * 119.99848 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99671 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47457 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47001 * 120.00691 * 13 11 9 16 16 H 1.48495 * 109.47090 * 240.00356 * 13 11 9 17 17 C 1.53003 * 109.47243 * 240.00514 * 2 1 3 18 18 H 1.09000 * 109.46317 * 299.99897 * 17 2 1 19 19 C 1.53001 * 109.47243 * 179.97438 * 17 2 1 20 20 N 1.46494 * 109.47057 * 59.99742 * 17 2 1 21 21 C 1.34784 * 119.99635 * 205.00313 * 20 17 2 22 22 O 1.21279 * 119.99925 * 359.97438 * 21 20 17 23 23 C 1.50700 * 119.99961 * 180.02562 * 21 20 17 24 24 C 1.53002 * 109.47318 * 59.99577 * 23 21 20 25 25 C 1.52997 * 117.50228 * 248.74868 * 24 23 21 26 26 C 1.53000 * 117.49983 * 180.08655 * 24 23 21 27 27 C 1.52992 * 109.47257 * 180.02562 * 23 21 20 28 28 C 1.53001 * 117.50089 * 128.74646 * 27 23 21 29 29 C 1.53005 * 117.50166 * 60.08362 * 27 23 21 30 30 H 1.09001 * 109.46857 * 300.00072 * 1 2 3 31 31 H 1.09005 * 109.47015 * 59.99746 * 1 2 3 32 32 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 33 33 H 1.00902 * 110.99656 * 151.04577 * 4 2 1 34 34 H 1.08998 * 109.47071 * 300.00692 * 5 4 2 35 35 H 1.09003 * 109.46923 * 59.99851 * 5 4 2 36 36 H 0.97001 * 119.99684 * 359.97438 * 8 6 5 37 37 H 0.97000 * 119.99291 * 179.97438 * 12 11 9 38 38 H 1.08991 * 109.46933 * 179.97438 * 19 17 2 39 39 H 1.09000 * 109.46920 * 299.99865 * 19 17 2 40 40 H 1.08996 * 109.46997 * 59.99455 * 19 17 2 41 41 H 0.96995 * 120.00292 * 25.27746 * 20 17 2 42 42 H 1.09004 * 109.46932 * 300.00223 * 23 21 20 43 43 H 1.09002 * 115.54483 * 34.42101 * 24 23 21 44 44 H 1.09001 * 117.49930 * 359.97438 * 25 24 23 45 45 H 1.09000 * 117.50182 * 145.01560 * 25 24 23 46 46 H 1.09002 * 117.49611 * 214.98165 * 26 24 23 47 47 H 1.08999 * 117.50093 * 359.97438 * 26 24 23 48 48 H 1.09001 * 115.55144 * 274.41805 * 27 23 21 49 49 H 1.09002 * 117.49629 * 0.02562 * 28 27 23 50 50 H 1.08994 * 117.50307 * 145.01928 * 28 27 23 51 51 H 1.08996 * 117.50080 * 214.97886 * 29 27 23 52 52 H 1.09010 * 117.49359 * 359.97438 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5886 -0.5215 3.5557 7 8 2.8698 -1.6983 3.4696 8 7 2.7288 0.1205 4.7324 9 6 3.1887 -0.5565 5.8322 10 1 3.4390 -1.6043 5.7556 11 6 3.3337 0.1056 7.0452 12 7 3.0296 1.3806 7.1382 13 14 3.9597 -0.8172 8.5439 14 1 4.2282 -2.2311 8.1782 15 1 5.2134 -0.1845 9.0268 16 1 2.9355 -0.7693 9.6181 17 6 2.0401 -0.7211 -1.2493 18 1 1.6767 -1.7488 -1.2493 19 6 3.5701 -0.7206 -1.2496 20 7 1.5517 -0.0305 -2.4454 21 6 1.4230 -0.7029 -3.6064 22 8 1.7119 -1.8795 -3.6610 23 6 0.9211 0.0077 -4.8370 24 6 1.8656 1.1613 -5.1807 25 6 1.3367 2.5854 -4.9990 26 6 1.5250 2.0121 -6.4058 27 6 0.8689 -0.9755 -6.0080 28 6 -0.4392 -1.0666 -6.7962 29 6 -0.0293 -2.2051 -5.8586 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.9173 -1.1204 1.0287 34 1 2.7588 1.0462 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5043 1.0617 4.8010 37 1 3.1305 1.8426 7.9851 38 1 3.9333 -1.2347 -2.1394 39 1 3.9330 0.3072 -1.2498 40 1 3.9337 -1.2341 -0.3597 41 1 1.3248 0.9116 -2.4028 42 1 -0.0780 0.4003 -4.6478 43 1 2.9200 0.9849 -4.9677 44 1 0.3157 2.7006 -4.6351 45 1 2.0432 3.3461 -4.6668 46 1 2.3554 2.3959 -6.9986 47 1 0.6284 1.7498 -6.9673 48 1 1.7998 -1.0967 -6.5620 49 1 -1.2626 -0.4257 -6.4808 50 1 -0.3691 -1.2480 -7.8687 51 1 0.3104 -3.1350 -6.3147 52 1 -0.5828 -2.3137 -4.9258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275542221.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:37 Heat of formation + Delta-G solvation = -51.532334 kcal Electronic energy + Delta-G solvation = -29308.933070 eV Core-core repulsion = 25308.766342 eV Total energy + Delta-G solvation = -4000.166728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.38100 -40.24681 -39.13402 -38.07335 -37.05449 -36.02845 -35.22356 -33.28375 -32.17306 -30.90439 -29.86100 -28.00046 -25.92268 -24.65247 -23.43136 -23.08944 -22.28896 -22.22430 -21.48659 -21.08508 -20.60857 -19.92834 -18.49872 -17.69688 -17.43236 -16.93251 -16.82802 -16.42440 -16.08156 -15.95111 -15.57943 -15.46254 -15.36103 -14.86279 -14.76112 -14.51818 -14.27420 -14.12754 -14.08093 -13.54714 -13.48806 -13.15083 -12.91122 -12.73917 -12.64150 -12.56760 -12.46627 -12.40799 -12.36179 -12.29359 -12.24817 -12.12086 -11.62064 -11.53582 -11.51632 -11.27405 -11.17910 -10.71379 -10.48907 -10.34290 -10.07966 -10.01571 -9.35395 -8.47271 -5.95596 1.36141 1.41703 1.55722 1.68185 2.03811 2.06006 2.29954 2.84684 2.92734 3.07941 3.20155 3.50273 3.56992 3.63607 3.74862 3.88114 3.97025 4.09256 4.14449 4.17541 4.22737 4.30844 4.33220 4.37838 4.44311 4.46234 4.48018 4.58544 4.59728 4.71858 4.82647 4.84501 4.86399 4.90311 4.97431 5.01716 5.07057 5.12528 5.18414 5.23207 5.28130 5.35168 5.36730 5.38872 5.41371 5.49600 5.90011 6.10867 6.36997 6.59901 6.61474 7.12704 7.33257 7.56101 8.11832 8.70268 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025888 B = 0.001853 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.327992 B =15103.017486 C =15554.543721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.084 3.916 3 H 0.071 0.929 4 N -0.680 5.680 5 C 0.067 3.933 6 C 0.436 3.564 7 O -0.625 6.625 8 N -0.572 5.572 9 C -0.333 4.333 10 H 0.077 0.923 11 C -0.013 4.013 12 N -0.919 5.919 13 Si 0.992 3.008 14 H -0.275 1.275 15 H -0.270 1.270 16 H -0.271 1.271 17 C 0.150 3.850 18 H 0.067 0.933 19 C -0.163 4.163 20 N -0.705 5.705 21 C 0.517 3.483 22 O -0.573 6.573 23 C -0.033 4.033 24 C -0.158 4.158 25 C -0.168 4.168 26 C -0.165 4.165 27 C -0.137 4.137 28 C -0.158 4.158 29 C -0.178 4.178 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.345 0.655 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.414 0.586 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.106 0.894 51 H 0.085 0.915 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 8.318 -28.619 30.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.089 0.911 4 N -0.316 5.316 5 C -0.065 4.065 6 C 0.224 3.776 7 O -0.511 6.511 8 N -0.209 5.209 9 C -0.463 4.463 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.200 1.200 15 H -0.195 1.195 16 H -0.196 1.196 17 C 0.044 3.956 18 H 0.085 0.915 19 C -0.222 4.222 20 N -0.358 5.358 21 C 0.304 3.696 22 O -0.451 6.451 23 C -0.055 4.055 24 C -0.176 4.176 25 C -0.205 4.205 26 C -0.201 4.201 27 C -0.155 4.155 28 C -0.195 4.195 29 C -0.216 4.216 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.167 0.833 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.251 0.749 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.117 0.883 49 H 0.125 0.875 50 H 0.124 0.876 51 H 0.104 0.896 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.994 6.584 -28.370 29.952 hybrid contribution 1.135 0.510 0.980 1.584 sum -5.860 7.095 -27.390 28.895 Atomic orbital electron populations 1.21799 0.93507 1.01827 1.02303 1.21766 0.96835 0.96512 0.87470 0.91121 1.60165 1.35239 1.32629 1.03555 1.21578 1.02488 0.93623 0.88808 1.20915 0.83208 0.87976 0.85503 1.90503 1.56657 1.18358 1.85623 1.41917 1.58260 1.12607 1.08160 1.19688 1.42046 0.95923 0.88631 0.90485 1.26020 0.97269 0.96647 1.01308 1.69670 1.48604 1.09608 1.28082 0.84884 0.78206 0.77995 0.77331 1.19983 1.19517 1.19590 1.20763 0.93734 0.96918 0.84146 0.91482 1.22177 0.95344 1.02809 1.01868 1.45822 1.67085 1.14377 1.08494 1.21040 0.76764 0.86775 0.84972 1.90713 1.50985 1.17943 1.85455 1.20445 1.00528 0.94225 0.90252 1.21942 0.98649 0.90901 1.06149 1.23216 1.03190 0.94334 0.99740 1.22998 1.03952 1.02281 0.90915 1.21866 0.95803 0.98768 0.99090 1.23170 0.96907 1.01164 0.98232 1.22760 1.04025 0.93609 1.01164 0.92380 0.90144 0.93863 0.83307 0.91085 0.87617 0.76876 0.91284 0.92898 0.90802 0.92196 0.74925 0.86846 0.88623 0.87275 0.87919 0.88379 0.87781 0.88327 0.87537 0.87570 0.89600 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.26 71.98 0.67 -2.12 16 2 C 0.08 1.84 2.28 44.92 0.10 1.94 16 3 H 0.07 1.25 7.80 -2.38 -0.02 1.24 16 4 N -0.68 -21.24 5.93 -495.56 -2.94 -24.18 16 5 C 0.07 2.24 5.97 85.56 0.51 2.75 16 6 C 0.44 20.76 7.82 87.66 0.69 21.44 16 7 O -0.62 -35.14 15.78 -3.07 -0.05 -35.19 16 8 N -0.57 -29.25 5.29 -306.98 -1.62 -30.87 16 9 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 10 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 11 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 12 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 13 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 17 C 0.15 3.34 2.29 44.99 0.10 3.45 16 18 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 19 C -0.16 -3.69 9.25 71.98 0.67 -3.02 16 20 N -0.71 -11.72 4.28 -442.53 -1.89 -13.62 16 21 C 0.52 10.47 6.97 87.66 0.61 11.08 16 22 O -0.57 -16.98 14.75 -3.03 -0.04 -17.03 16 23 C -0.03 -0.44 2.50 -11.54 -0.03 -0.47 16 24 C -0.16 -1.62 4.93 -10.79 -0.05 -1.68 16 25 C -0.17 -1.08 10.18 30.62 0.31 -0.76 16 26 C -0.16 -1.25 9.89 30.62 0.30 -0.94 16 27 C -0.14 -2.09 4.38 -10.79 -0.05 -2.14 16 28 C -0.16 -1.79 10.18 30.62 0.31 -1.48 16 29 C -0.18 -3.18 8.98 30.62 0.28 -2.91 16 30 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 31 H 0.08 1.16 7.45 -2.38 -0.02 1.14 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.35 11.57 5.87 -89.69 -0.53 11.05 16 34 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 35 H 0.11 3.15 7.44 -2.39 -0.02 3.13 16 36 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 37 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.51 6.21 -2.39 -0.01 1.50 16 41 H 0.41 4.38 8.29 -92.71 -0.77 3.61 16 42 H 0.11 1.10 7.66 -2.38 -0.02 1.08 16 43 H 0.10 1.25 8.11 -2.39 -0.02 1.23 16 44 H 0.11 0.46 8.05 -2.39 -0.02 0.44 16 45 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 1.66 8.11 -2.39 -0.02 1.64 16 49 H 0.11 0.91 8.05 -2.39 -0.02 0.89 16 50 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.08 1.60 8.10 -2.38 -0.02 1.58 16 Total: -1.00 -72.90 422.74 0.36 -72.54 By element: Atomic # 1 Polarization: 46.53 SS G_CDS: -1.09 Total: 45.44 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 5.70 Total: 6.73 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -6.18 Total: -117.64 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -0.09 Total: -52.21 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -72.90 0.36 -72.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275542221.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.009 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds