Wall clock time and date at job start Tue Mar 31 2020 20:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 5 5 C 1.46898 * 110.99888 * 85.00162 * 4 2 1 6 6 C 1.50705 * 109.46661 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00125 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99549 * 179.97438 * 6 5 4 9 9 C 1.37103 * 120.00062 * 179.97438 * 8 6 5 10 10 H 1.08003 * 119.99229 * 0.02562 * 9 8 6 11 11 C 1.38942 * 120.00207 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99885 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00123 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47257 * 59.99848 * 13 11 9 15 15 H 1.48495 * 109.47399 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46784 * 300.00182 * 13 11 9 17 17 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 18 18 H 1.09003 * 109.47324 * 184.99855 * 17 2 1 19 19 C 1.52995 * 109.47248 * 64.99505 * 17 2 1 20 20 N 1.46501 * 109.46825 * 304.99538 * 17 2 1 21 21 C 1.34775 * 120.00196 * 204.99796 * 20 17 2 22 22 O 1.21290 * 119.99806 * 0.02562 * 21 20 17 23 23 C 1.50702 * 120.00153 * 180.02562 * 21 20 17 24 24 C 1.53001 * 109.46823 * 60.00495 * 23 21 20 25 25 C 1.52998 * 117.49691 * 248.74442 * 24 23 21 26 26 C 1.53002 * 117.49476 * 180.08515 * 24 23 21 27 27 C 1.53004 * 109.46847 * 180.02562 * 23 21 20 28 28 C 1.52999 * 117.49742 * 128.75323 * 27 23 21 29 29 C 1.52994 * 117.49752 * 60.08932 * 27 23 21 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 32 32 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 33 33 H 1.00902 * 110.99923 * 208.96103 * 4 2 1 34 34 H 1.08995 * 109.47296 * 299.99911 * 5 4 2 35 35 H 1.08997 * 109.47334 * 60.00212 * 5 4 2 36 36 H 0.97003 * 120.00664 * 0.02562 * 8 6 5 37 37 H 0.97010 * 119.99812 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.47686 * 300.00100 * 19 17 2 39 39 H 1.09004 * 109.47232 * 60.00289 * 19 17 2 40 40 H 1.09003 * 109.47083 * 179.97438 * 19 17 2 41 41 H 0.97001 * 120.00009 * 25.00134 * 20 17 2 42 42 H 1.08999 * 109.47284 * 300.00003 * 23 21 20 43 43 H 1.08997 * 115.55122 * 34.41790 * 24 23 21 44 44 H 1.09004 * 117.49848 * 359.97438 * 25 24 23 45 45 H 1.08995 * 117.50071 * 145.02278 * 25 24 23 46 46 H 1.08997 * 117.49772 * 214.97684 * 26 24 23 47 47 H 1.09002 * 117.50229 * 359.97438 * 26 24 23 48 48 H 1.08996 * 115.54732 * 274.41744 * 27 23 21 49 49 H 1.09003 * 117.49993 * 359.97438 * 28 27 23 50 50 H 1.08991 * 117.50254 * 145.02121 * 28 27 23 51 51 H 1.09002 * 117.49883 * 214.97304 * 29 27 23 52 52 H 1.08998 * 117.50376 * 359.97438 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 8 2.8675 -1.6986 -3.4703 8 7 2.7271 0.1204 -4.7327 9 6 3.1869 -0.5566 -5.8327 10 1 3.4365 -1.6046 -5.7563 11 6 3.3306 0.1052 -7.0459 12 7 3.0264 1.3802 -7.1389 13 14 3.9564 -0.8175 -8.5448 14 1 3.0350 -1.9399 -8.8555 15 1 4.0193 0.1074 -9.7049 16 1 5.3129 -1.3534 -8.2655 17 6 2.0400 -0.7214 1.2492 18 1 3.1263 -0.6445 1.2951 19 6 1.6351 -2.1955 1.1878 20 7 1.4559 -0.1038 2.4423 21 6 2.0912 -0.1941 3.6275 22 8 3.1468 -0.7862 3.7061 23 6 1.4900 0.4408 4.8550 24 6 0.1149 -0.1733 5.1252 25 6 -1.1101 0.7204 4.9216 26 6 -0.6638 0.3436 6.3365 27 6 2.4044 0.1937 6.0566 28 6 2.8067 1.4058 6.8992 29 6 3.8327 0.7369 5.9809 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.9172 -1.1206 -1.0288 34 1 1.0870 0.6165 -2.5525 35 1 2.7588 1.0462 -2.1182 36 1 2.5033 1.0618 -4.8013 37 1 3.1264 1.8422 -7.9861 38 1 0.5488 -2.2725 1.1419 39 1 2.0697 -2.6551 0.3000 40 1 1.9989 -2.7096 2.0775 41 1 0.6118 0.3700 2.3794 42 1 1.3838 1.5136 4.6943 43 1 0.0144 -1.2295 4.8755 44 1 -0.9363 1.7460 4.5956 45 1 -2.0166 0.2521 4.5384 46 1 -1.2770 -0.3726 6.8835 47 1 -0.1963 1.1207 6.9412 48 1 2.2526 -0.7523 6.5762 49 1 2.4203 2.3793 6.5972 50 1 2.9200 1.2571 7.9729 51 1 4.6206 0.1484 6.4511 52 1 4.1212 1.2699 5.0749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275542222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:41 Heat of formation + Delta-G solvation = -27.904174 kcal Electronic energy + Delta-G solvation = -29317.429119 eV Core-core repulsion = 25318.286985 eV Total energy + Delta-G solvation = -3999.142134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59467 -38.76117 -38.07197 -37.14258 -36.46238 -34.38081 -33.75891 -31.43497 -31.09397 -29.56816 -28.84920 -26.56291 -24.65089 -23.72289 -22.93960 -22.56985 -21.79157 -21.58621 -20.02938 -19.71972 -19.29463 -17.95080 -17.64517 -16.48392 -16.22311 -15.96675 -15.51725 -15.47625 -15.09317 -14.66544 -14.55584 -14.41722 -14.06706 -13.93199 -13.65976 -13.58112 -13.17667 -12.79471 -12.53553 -12.20146 -12.11840 -12.01702 -11.94030 -11.89376 -11.79495 -11.72004 -11.57949 -11.42014 -11.07641 -10.98268 -10.87499 -10.76861 -10.66478 -10.59687 -10.43933 -10.21074 -10.18329 -9.70541 -9.49698 -9.17550 -8.46213 -8.10979 -7.95930 -6.41426 -3.82243 2.48871 2.88698 3.20629 3.26182 3.28474 3.30809 3.63846 3.91111 4.10733 4.15110 4.28952 4.33669 4.41455 4.57777 4.62908 4.65413 4.72607 4.86638 4.90384 4.99847 5.01104 5.15645 5.17481 5.23145 5.25576 5.36017 5.39119 5.45470 5.48602 5.58460 5.60833 5.66759 5.70387 5.74602 5.76474 5.81588 5.85725 5.94702 5.95280 5.97631 5.99668 6.19215 6.28334 6.41842 6.46687 7.17065 7.37653 7.55373 7.60953 8.06344 8.11501 8.61428 9.18086 9.54430 10.05886 10.76216 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.001859 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.683075 B =15059.520651 C =15408.966118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.046 0.954 4 N -0.656 5.656 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.141 3.859 18 H 0.085 0.915 19 C -0.156 4.156 20 N -0.722 5.722 21 C 0.519 3.481 22 O -0.529 6.529 23 C -0.045 4.045 24 C -0.147 4.147 25 C -0.180 4.180 26 C -0.168 4.168 27 C -0.128 4.128 28 C -0.185 4.185 29 C -0.156 4.156 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.351 0.649 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.399 0.601 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.094 0.906 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.116 3.979 27.393 28.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 H 0.064 0.936 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.037 3.963 18 H 0.103 0.897 19 C -0.214 4.214 20 N -0.375 5.375 21 C 0.304 3.696 22 O -0.405 6.405 23 C -0.066 4.066 24 C -0.166 4.166 25 C -0.217 4.217 26 C -0.205 4.205 27 C -0.147 4.147 28 C -0.222 4.222 29 C -0.193 4.193 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.235 0.765 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.125 0.875 49 H 0.109 0.891 50 H 0.112 0.888 51 H 0.112 0.888 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.747 2.635 27.144 28.350 hybrid contribution 0.438 1.049 -0.741 1.357 sum -7.309 3.684 26.403 27.642 Atomic orbital electron populations 1.21875 0.94499 1.02905 1.00840 1.21716 0.96511 0.95850 0.89339 0.93609 1.60190 1.34941 1.31689 1.02211 1.21731 1.01303 0.93886 0.91269 1.19784 0.84968 0.88206 0.84411 1.90526 1.55253 1.16109 1.84733 1.41855 1.57798 1.12416 1.07966 1.19656 1.40002 0.96437 0.86794 0.87961 1.25263 0.97666 0.95792 0.99250 1.69607 1.48660 1.08864 1.27241 0.85913 0.79433 0.78828 0.80011 1.19880 1.20995 1.19915 1.21056 0.98605 0.93414 0.83246 0.89666 1.22109 1.01971 0.94723 1.02625 1.46180 1.25967 1.57218 1.08159 1.20467 0.84754 0.80146 0.84204 1.90721 1.22294 1.42034 1.85410 1.20503 0.93512 1.00379 0.92244 1.22088 0.90379 0.99505 1.04622 1.23124 0.98145 1.00286 1.00111 1.22931 1.02976 1.03656 0.90909 1.21814 0.96752 0.98344 0.97776 1.23106 1.04794 0.96481 0.97770 1.22804 0.92324 1.03053 1.01112 0.91177 0.93258 0.92108 0.82833 0.89560 0.93859 0.77482 0.91838 0.92228 0.90112 0.92926 0.76499 0.88741 0.87305 0.88561 0.88381 0.88651 0.88386 0.87456 0.89061 0.88770 0.88774 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.93 37.16 0.33 -1.13 16 2 C 0.08 0.90 2.66 -67.71 -0.18 0.72 16 3 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 4 N -0.66 -10.18 5.14 -107.99 -0.55 -10.73 16 5 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 6 C 0.44 10.35 7.82 -10.98 -0.09 10.26 16 7 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 8 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 9 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 10 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 13 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 C 0.14 1.62 2.30 -67.93 -0.16 1.46 16 18 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 19 C -0.16 -1.88 9.02 37.16 0.33 -1.54 16 20 N -0.72 -6.73 4.89 -53.80 -0.26 -7.00 16 21 C 0.52 5.50 6.97 -10.99 -0.08 5.42 16 22 O -0.53 -7.64 14.75 5.55 0.08 -7.55 16 23 C -0.05 -0.34 2.50 -91.77 -0.23 -0.57 16 24 C -0.15 -0.93 4.94 -90.62 -0.45 -1.38 16 25 C -0.18 -0.89 10.18 -26.69 -0.27 -1.16 16 26 C -0.17 -0.87 9.88 -26.69 -0.26 -1.13 16 27 C -0.13 -1.05 4.38 -90.62 -0.40 -1.44 16 28 C -0.18 -1.24 10.18 -26.69 -0.27 -1.51 16 29 C -0.16 -1.39 8.98 -26.69 -0.24 -1.63 16 30 H 0.07 0.77 6.57 -51.93 -0.34 0.43 16 31 H 0.05 0.37 6.29 -51.93 -0.33 0.04 16 32 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 33 H 0.35 5.79 7.62 -39.29 -0.30 5.49 16 34 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 35 H 0.04 0.68 8.05 -51.93 -0.42 0.27 16 36 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 39 H 0.08 1.09 7.17 -51.93 -0.37 0.72 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 2.88 6.47 -40.82 -0.26 2.61 16 42 H 0.09 0.62 7.66 -51.93 -0.40 0.22 16 43 H 0.11 0.79 8.11 -51.93 -0.42 0.37 16 44 H 0.10 0.41 8.05 -51.93 -0.42 0.00 16 45 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.11 0.92 8.11 -51.93 -0.42 0.50 16 49 H 0.09 0.54 8.05 -51.93 -0.42 0.12 16 50 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 418.96 15.07 6.31 6.31 Total: -1.00 -32.17 418.96 -9.72 -41.88 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -8.80 Total: 15.59 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.22 Total: -0.80 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.15 Total: -55.88 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.17 -9.72 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275542222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.978 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds