Wall clock time and date at job start Tue Mar 31 2020 20:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 5 5 C 1.46898 * 110.99888 * 85.00162 * 4 2 1 6 6 C 1.50705 * 109.46661 * 180.02562 * 5 4 2 7 7 O 1.21288 * 120.00125 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99549 * 179.97438 * 6 5 4 9 9 C 1.37103 * 120.00062 * 179.97438 * 8 6 5 10 10 H 1.08003 * 119.99229 * 0.02562 * 9 8 6 11 11 C 1.38942 * 120.00207 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99885 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00123 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47257 * 59.99848 * 13 11 9 15 15 H 1.48495 * 109.47399 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46784 * 300.00182 * 13 11 9 17 17 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 18 18 H 1.09003 * 109.47324 * 184.99855 * 17 2 1 19 19 C 1.52995 * 109.47248 * 64.99505 * 17 2 1 20 20 N 1.46501 * 109.46825 * 304.99538 * 17 2 1 21 21 C 1.34775 * 120.00196 * 204.99796 * 20 17 2 22 22 O 1.21290 * 119.99806 * 0.02562 * 21 20 17 23 23 C 1.50702 * 120.00153 * 180.02562 * 21 20 17 24 24 C 1.53001 * 109.46823 * 60.00495 * 23 21 20 25 25 C 1.52998 * 117.49691 * 248.74442 * 24 23 21 26 26 C 1.53002 * 117.49476 * 180.08515 * 24 23 21 27 27 C 1.53004 * 109.46847 * 180.02562 * 23 21 20 28 28 C 1.52999 * 117.49742 * 128.75323 * 27 23 21 29 29 C 1.52994 * 117.49752 * 60.08932 * 27 23 21 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 32 32 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 33 33 H 1.00902 * 110.99923 * 208.96103 * 4 2 1 34 34 H 1.08995 * 109.47296 * 299.99911 * 5 4 2 35 35 H 1.08997 * 109.47334 * 60.00212 * 5 4 2 36 36 H 0.97003 * 120.00664 * 0.02562 * 8 6 5 37 37 H 0.97010 * 119.99812 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.47686 * 300.00100 * 19 17 2 39 39 H 1.09004 * 109.47232 * 60.00289 * 19 17 2 40 40 H 1.09003 * 109.47083 * 179.97438 * 19 17 2 41 41 H 0.97001 * 120.00009 * 25.00134 * 20 17 2 42 42 H 1.08999 * 109.47284 * 300.00003 * 23 21 20 43 43 H 1.08997 * 115.55122 * 34.41790 * 24 23 21 44 44 H 1.09004 * 117.49848 * 359.97438 * 25 24 23 45 45 H 1.08995 * 117.50071 * 145.02278 * 25 24 23 46 46 H 1.08997 * 117.49772 * 214.97684 * 26 24 23 47 47 H 1.09002 * 117.50229 * 359.97438 * 26 24 23 48 48 H 1.08996 * 115.54732 * 274.41744 * 27 23 21 49 49 H 1.09003 * 117.49993 * 359.97438 * 28 27 23 50 50 H 1.08991 * 117.50254 * 145.02121 * 28 27 23 51 51 H 1.09002 * 117.49883 * 214.97304 * 29 27 23 52 52 H 1.08998 * 117.50376 * 359.97438 * 29 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 8 2.8675 -1.6986 -3.4703 8 7 2.7271 0.1204 -4.7327 9 6 3.1869 -0.5566 -5.8327 10 1 3.4365 -1.6046 -5.7563 11 6 3.3306 0.1052 -7.0459 12 7 3.0264 1.3802 -7.1389 13 14 3.9564 -0.8175 -8.5448 14 1 3.0350 -1.9399 -8.8555 15 1 4.0193 0.1074 -9.7049 16 1 5.3129 -1.3534 -8.2655 17 6 2.0400 -0.7214 1.2492 18 1 3.1263 -0.6445 1.2951 19 6 1.6351 -2.1955 1.1878 20 7 1.4559 -0.1038 2.4423 21 6 2.0912 -0.1941 3.6275 22 8 3.1468 -0.7862 3.7061 23 6 1.4900 0.4408 4.8550 24 6 0.1149 -0.1733 5.1252 25 6 -1.1101 0.7204 4.9216 26 6 -0.6638 0.3436 6.3365 27 6 2.4044 0.1937 6.0566 28 6 2.8067 1.4058 6.8992 29 6 3.8327 0.7369 5.9809 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.9172 -1.1206 -1.0288 34 1 1.0870 0.6165 -2.5525 35 1 2.7588 1.0462 -2.1182 36 1 2.5033 1.0618 -4.8013 37 1 3.1264 1.8422 -7.9861 38 1 0.5488 -2.2725 1.1419 39 1 2.0697 -2.6551 0.3000 40 1 1.9989 -2.7096 2.0775 41 1 0.6118 0.3700 2.3794 42 1 1.3838 1.5136 4.6943 43 1 0.0144 -1.2295 4.8755 44 1 -0.9363 1.7460 4.5956 45 1 -2.0166 0.2521 4.5384 46 1 -1.2770 -0.3726 6.8835 47 1 -0.1963 1.1207 6.9412 48 1 2.2526 -0.7523 6.5762 49 1 2.4203 2.3793 6.5972 50 1 2.9200 1.2571 7.9729 51 1 4.6206 0.1484 6.4511 52 1 4.1212 1.2699 5.0749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275542222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:40 Heat of formation + Delta-G solvation = -49.375867 kcal Electronic energy + Delta-G solvation = -29318.360202 eV Core-core repulsion = 25318.286985 eV Total energy + Delta-G solvation = -4000.073216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40289 -40.23745 -39.17130 -38.09852 -37.05731 -36.03551 -35.23129 -33.28119 -32.30411 -30.42860 -29.66505 -28.12449 -26.15400 -24.96746 -23.46682 -23.09544 -22.38762 -22.28442 -21.12617 -20.78905 -20.61634 -19.92612 -18.55097 -17.70309 -17.30152 -16.89289 -16.68471 -16.59108 -16.21420 -16.02305 -15.69872 -15.46276 -15.28047 -15.19484 -14.57754 -14.49066 -14.27402 -14.24697 -13.63434 -13.52683 -13.42290 -13.10125 -13.06720 -12.84502 -12.66212 -12.51431 -12.47238 -12.42874 -12.34669 -12.26734 -12.12677 -11.92175 -11.67111 -11.53245 -11.50216 -11.28007 -11.18432 -10.71901 -10.49588 -10.34961 -10.07132 -10.01630 -9.37719 -8.46699 -5.95335 1.39642 1.41512 1.52353 1.66336 2.04305 2.06673 2.29973 2.84461 2.92143 3.06714 3.20532 3.48855 3.59403 3.66757 3.73981 3.87222 3.94790 4.08906 4.13750 4.19645 4.22248 4.30366 4.33325 4.38417 4.46102 4.46941 4.48958 4.58808 4.65868 4.80322 4.82413 4.84183 4.86613 4.90346 5.00661 5.04076 5.06146 5.12620 5.22675 5.27200 5.28469 5.34975 5.36860 5.40711 5.50828 5.52929 5.88407 6.09190 6.32594 6.59296 6.60609 7.12562 7.31211 7.56263 8.11757 8.70382 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023830 B = 0.001859 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.683075 B =15059.520651 C =15408.966118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.057 0.943 4 N -0.668 5.668 5 C 0.066 3.934 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.150 3.850 18 H 0.063 0.937 19 C -0.148 4.148 20 N -0.708 5.708 21 C 0.515 3.485 22 O -0.573 6.573 23 C -0.034 4.034 24 C -0.159 4.159 25 C -0.169 4.169 26 C -0.164 4.164 27 C -0.136 4.136 28 C -0.158 4.158 29 C -0.179 4.179 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.342 0.658 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.413 0.587 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.106 0.894 51 H 0.086 0.914 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.934 5.834 28.393 30.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 H 0.075 0.925 4 N -0.302 5.302 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.194 1.194 16 H -0.198 1.198 17 C 0.044 3.956 18 H 0.081 0.919 19 C -0.206 4.206 20 N -0.362 5.362 21 C 0.302 3.698 22 O -0.452 6.452 23 C -0.055 4.055 24 C -0.177 4.177 25 C -0.205 4.205 26 C -0.201 4.201 27 C -0.155 4.155 28 C -0.195 4.195 29 C -0.216 4.216 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.252 0.748 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.117 0.883 49 H 0.124 0.876 50 H 0.125 0.875 51 H 0.104 0.896 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.613 4.534 28.158 30.098 hybrid contribution 1.009 0.442 -0.978 1.473 sum -8.604 4.976 27.180 28.940 Atomic orbital electron populations 1.21885 0.92752 1.02873 1.02375 1.21761 0.97641 0.95814 0.87555 0.92469 1.60227 1.34555 1.32110 1.03274 1.21585 1.02443 0.93577 0.89002 1.20878 0.83213 0.87994 0.85426 1.90497 1.56587 1.18236 1.85589 1.41920 1.58323 1.12578 1.08204 1.19623 1.42202 0.95962 0.88596 0.90385 1.26033 0.97258 0.96654 1.01363 1.69665 1.48563 1.09642 1.28171 0.84997 0.78676 0.77847 0.76863 1.19724 1.19427 1.19813 1.20795 0.97470 0.93180 0.84136 0.91918 1.22007 1.02475 0.95018 1.01114 1.46006 1.26239 1.56731 1.07190 1.21084 0.84132 0.79412 0.85123 1.90709 1.24345 1.44057 1.86066 1.20453 0.93810 1.01038 0.90219 1.21944 0.90153 0.99105 1.06534 1.23226 0.97228 1.00468 0.99606 1.22999 1.02396 1.03659 0.91008 1.21866 0.96210 0.98926 0.98509 1.23172 1.01998 0.96309 0.97982 1.22758 0.92931 1.04318 1.01570 0.92006 0.89967 0.92354 0.83859 0.87413 0.91749 0.76946 0.91291 0.91009 0.92020 0.94018 0.74840 0.86924 0.88599 0.87322 0.87797 0.88309 0.87787 0.88274 0.87560 0.87517 0.89560 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.93 71.98 0.64 -1.84 16 2 C 0.08 1.79 2.66 44.91 0.12 1.91 16 3 H 0.06 1.17 7.80 -2.39 -0.02 1.15 16 4 N -0.67 -20.39 5.14 -495.58 -2.54 -22.93 16 5 C 0.07 2.21 5.97 85.56 0.51 2.72 16 6 C 0.44 20.77 7.82 87.66 0.69 21.45 16 7 O -0.62 -34.66 15.78 -3.05 -0.05 -34.71 16 8 N -0.57 -29.40 5.29 -306.99 -1.62 -31.03 16 9 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 10 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 11 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 12 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 13 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 17 C 0.15 3.36 2.30 44.99 0.10 3.46 16 18 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 19 C -0.15 -3.60 9.02 71.98 0.65 -2.95 16 20 N -0.71 -12.20 4.89 -442.52 -2.16 -14.36 16 21 C 0.52 10.66 6.97 87.66 0.61 11.27 16 22 O -0.57 -17.09 14.75 -3.06 -0.05 -17.13 16 23 C -0.03 -0.47 2.50 -11.54 -0.03 -0.49 16 24 C -0.16 -1.68 4.94 -10.79 -0.05 -1.74 16 25 C -0.17 -1.11 10.18 30.62 0.31 -0.80 16 26 C -0.16 -1.26 9.88 30.62 0.30 -0.96 16 27 C -0.14 -2.12 4.38 -10.79 -0.05 -2.16 16 28 C -0.16 -1.81 10.18 30.62 0.31 -1.50 16 29 C -0.18 -3.20 8.98 30.62 0.27 -2.92 16 30 H 0.06 1.22 6.57 -2.39 -0.02 1.20 16 31 H 0.08 0.89 6.29 -2.39 -0.02 0.88 16 32 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 33 H 0.34 11.52 7.62 -89.69 -0.68 10.84 16 34 H 0.11 3.18 7.44 -2.39 -0.02 3.16 16 35 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 36 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 37 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 38 H 0.07 1.55 6.57 -2.39 -0.02 1.53 16 39 H 0.06 1.74 7.17 -2.39 -0.02 1.72 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.41 4.75 6.47 -92.71 -0.60 4.15 16 42 H 0.11 1.14 7.66 -2.39 -0.02 1.12 16 43 H 0.10 1.29 8.11 -2.39 -0.02 1.27 16 44 H 0.11 0.48 8.05 -2.38 -0.02 0.46 16 45 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.10 1.68 8.11 -2.39 -0.02 1.66 16 49 H 0.11 0.92 8.05 -2.39 -0.02 0.90 16 50 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -71.85 418.96 0.49 -71.37 By element: Atomic # 1 Polarization: 47.05 SS G_CDS: -1.07 Total: 45.98 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.67 Total: 6.95 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -6.05 Total: -117.65 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.09 Total: -51.84 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.85 0.49 -71.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275542222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.990 kcal (2) G-P(sol) polarization free energy of solvation -71.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds