Wall clock time and date at job start Tue Mar 31 2020 20:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27771 * 4 2 1 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2 8 8 C 1.52995 * 109.47490 * 59.99635 * 7 5 4 9 9 C 1.52998 * 117.49798 * 248.74557 * 8 7 5 10 10 C 1.53004 * 117.49989 * 180.08615 * 8 7 5 11 11 C 1.52999 * 109.47004 * 179.97438 * 7 5 4 12 12 C 1.53001 * 117.50114 * 128.74172 * 11 7 5 13 13 C 1.53011 * 117.49952 * 60.08654 * 11 7 5 14 14 C 1.52999 * 109.46645 * 240.00521 * 2 1 3 15 15 H 1.08999 * 109.47014 * 299.99449 * 14 2 1 16 16 C 1.53013 * 109.46546 * 180.02562 * 14 2 1 17 17 N 1.46893 * 109.47605 * 60.00092 * 14 2 1 18 18 C 1.46897 * 111.00101 * 204.99710 * 17 14 2 19 19 C 1.50700 * 109.47431 * 180.02562 * 18 17 14 20 20 O 1.21290 * 119.99756 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00228 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99811 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00453 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99882 * 179.97438 * 22 21 19 25 25 N 1.31404 * 120.00177 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99762 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.47021 * 90.00275 * 26 24 22 28 28 H 1.48501 * 109.47005 * 209.99699 * 26 24 22 29 29 H 1.48493 * 109.47462 * 330.00066 * 26 24 22 30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 32 32 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 33 33 H 0.97001 * 119.99790 * 94.99484 * 4 2 1 34 34 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 35 35 H 1.08996 * 115.55012 * 34.41571 * 8 7 5 36 36 H 1.08992 * 117.50065 * 0.02562 * 9 8 7 37 37 H 1.09010 * 117.49742 * 145.02100 * 9 8 7 38 38 H 1.08998 * 117.49536 * 214.98164 * 10 8 7 39 39 H 1.09000 * 117.49660 * 359.97438 * 10 8 7 40 40 H 1.08992 * 115.55385 * 274.41389 * 11 7 5 41 41 H 1.09002 * 117.49807 * 0.02562 * 12 11 7 42 42 H 1.09003 * 117.50044 * 145.02084 * 12 11 7 43 43 H 1.09002 * 117.49700 * 214.98065 * 13 11 7 44 44 H 1.09001 * 117.49574 * 359.97316 * 13 11 7 45 45 H 1.08999 * 109.46705 * 299.99259 * 16 14 2 46 46 H 1.08991 * 109.47189 * 59.99327 * 16 14 2 47 47 H 1.08997 * 109.46640 * 180.02562 * 16 14 2 48 48 H 1.00898 * 110.99909 * 328.94839 * 17 14 2 49 49 H 1.09006 * 109.47074 * 300.00127 * 18 17 14 50 50 H 1.09001 * 109.47003 * 59.99819 * 18 17 14 51 51 H 0.97000 * 119.99850 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00582 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1417 -0.0197 2.3585 6 8 1.8533 1.1571 2.4129 7 6 2.6382 -0.7317 3.5903 8 6 4.0418 -1.2822 3.3305 9 6 4.2000 -2.8015 3.2441 10 6 4.7231 -2.0456 4.4680 11 6 2.6849 0.2501 4.7628 12 6 1.9987 -0.1702 6.0641 13 6 1.3710 0.9124 5.1826 14 6 2.0399 -0.7212 -1.2493 15 1 1.6766 -1.7488 -1.2493 16 6 3.5700 -0.7217 -1.2490 17 7 1.5502 -0.0286 -2.4487 18 6 1.4874 -0.9436 -3.5962 19 6 0.9826 -0.1992 -4.8053 20 8 0.7031 0.9779 -4.7197 21 7 0.8417 -0.8414 -5.9818 22 6 0.3819 -0.1642 -7.0816 23 1 0.1322 0.8837 -7.0052 24 6 0.2371 -0.8262 -8.2947 25 7 -0.2031 -0.1771 -9.3490 26 14 0.6696 -2.6387 -8.4271 27 1 -0.5306 -3.4577 -8.1205 28 1 1.1336 -2.9374 -9.8058 29 1 1.7495 -2.9618 -7.4604 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6319 1.1525 34 1 1.9642 -1.5539 3.8312 35 1 4.6735 -0.6729 2.6842 36 1 3.3040 -3.4089 3.3720 37 1 4.9361 -3.1918 2.5411 38 1 5.8031 -1.9387 4.5698 39 1 4.1715 -2.1553 5.4017 40 1 3.5957 0.8434 4.8432 41 1 1.5142 -1.1464 6.0850 42 1 2.4578 0.1469 7.0005 43 1 1.4175 1.9413 5.5393 44 1 0.4734 0.6489 4.6231 45 1 3.9336 0.3059 -1.2488 46 1 3.9329 -1.2357 -0.3591 47 1 3.9332 -1.2350 -2.1392 48 1 0.6526 0.3993 -2.2780 49 1 2.4829 -1.3374 -3.8018 50 1 0.8110 -1.7672 -3.3675 51 1 1.0656 -1.7827 -6.0504 52 1 -0.3045 -0.6392 -10.1958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275542224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:44 Heat of formation + Delta-G solvation = -22.261697 kcal Electronic energy + Delta-G solvation = -29404.618991 eV Core-core repulsion = 25405.721533 eV Total energy + Delta-G solvation = -3998.897458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.62756 -38.85908 -38.18420 -37.18187 -36.49501 -34.44314 -33.83691 -31.70496 -31.24626 -29.98577 -29.18270 -26.56507 -24.24823 -23.59327 -22.91361 -22.59768 -21.81678 -21.44128 -20.59809 -19.90406 -19.41073 -18.43828 -17.63895 -16.66415 -16.21474 -16.09256 -15.55773 -15.37278 -15.22436 -14.85917 -14.52353 -14.22540 -14.08062 -13.99385 -13.65844 -13.56344 -13.34678 -13.02614 -12.64564 -12.45321 -12.20405 -12.14025 -12.01802 -11.96422 -11.93320 -11.78343 -11.71079 -11.53409 -11.39881 -11.17242 -11.00291 -10.77883 -10.70011 -10.61588 -10.60554 -10.21076 -9.98100 -9.74428 -9.58006 -9.24364 -8.59138 -8.22432 -8.16719 -6.31413 -3.82894 2.45067 2.82474 3.01546 3.05344 3.14022 3.25686 3.60092 3.73256 4.07379 4.09897 4.16772 4.25969 4.37448 4.51259 4.58285 4.62689 4.69825 4.73050 4.85846 4.92823 4.97773 4.98886 5.07913 5.20425 5.20746 5.31187 5.33216 5.37146 5.43947 5.46003 5.56907 5.59820 5.63829 5.67274 5.67837 5.72053 5.80093 5.82841 5.84096 5.90140 5.93165 5.95712 6.09143 6.26603 6.31499 7.06936 7.31381 7.54306 7.57899 8.07348 8.14158 8.59223 8.94639 9.41863 9.82047 10.81691 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.001980 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.916759 B =14136.463488 C =14886.464662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 H 0.099 0.901 4 N -0.720 5.720 5 C 0.520 3.480 6 O -0.526 6.526 7 C -0.045 4.045 8 C -0.148 4.148 9 C -0.180 4.180 10 C -0.168 4.168 11 C -0.128 4.128 12 C -0.185 4.185 13 C -0.156 4.156 14 C 0.078 3.922 15 H 0.045 0.955 16 C -0.139 4.139 17 N -0.661 5.661 18 C 0.049 3.951 19 C 0.450 3.550 20 O -0.563 6.563 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.353 0.647 49 H 0.088 0.912 50 H 0.045 0.955 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 -9.884 30.146 32.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.036 3.964 3 H 0.117 0.883 4 N -0.372 5.372 5 C 0.306 3.694 6 O -0.402 6.402 7 C -0.066 4.066 8 C -0.166 4.166 9 C -0.217 4.217 10 C -0.205 4.205 11 C -0.147 4.147 12 C -0.222 4.222 13 C -0.193 4.193 14 C -0.032 4.032 15 H 0.063 0.937 16 C -0.197 4.197 17 N -0.297 5.297 18 C -0.084 4.084 19 C 0.235 3.765 20 O -0.445 6.445 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.232 0.768 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.176 0.824 49 H 0.106 0.894 50 H 0.063 0.937 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.280 -7.947 29.819 31.952 hybrid contribution -0.320 -2.557 -0.262 2.590 sum 7.960 -10.504 29.558 32.363 Atomic orbital electron populations 1.22262 0.95337 1.02075 1.03190 1.21050 0.93821 0.98296 0.83235 0.88272 1.46003 1.67731 1.14005 1.09493 1.20439 0.77443 0.87342 0.84190 1.90729 1.49015 1.15689 1.84723 1.20499 0.95880 0.97678 0.92526 1.22096 0.96300 0.94452 1.03765 1.23117 1.03655 0.93357 1.01525 1.22931 1.00627 1.03490 0.93415 1.21821 0.98050 1.01228 0.93607 1.23103 1.04587 0.99954 0.94512 1.22803 0.96580 0.97666 1.02220 1.21730 0.96541 0.95749 0.89212 0.93679 1.21802 0.94142 1.02832 1.00943 1.60155 1.35487 1.31752 1.02297 1.21756 1.01362 0.93954 0.91318 1.19691 0.84555 0.88225 0.84017 1.90574 1.53719 1.15807 1.84376 1.42202 1.60136 1.11075 1.09594 1.19437 1.40044 0.98035 0.85831 0.86258 1.25044 0.97516 0.98411 0.95235 1.69618 1.45144 1.36507 1.00821 0.86670 0.78962 0.85162 0.78577 1.19679 1.20166 1.19495 0.92627 0.91686 0.90844 0.76781 0.88758 0.87245 0.88615 0.88398 0.88627 0.88402 0.87417 0.89096 0.88765 0.88752 0.89028 0.91707 0.92809 0.92445 0.82412 0.89430 0.93734 0.79724 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.24 37.16 0.34 -1.50 16 2 C 0.14 1.52 2.29 -67.93 -0.16 1.37 16 3 H 0.10 1.34 7.58 -51.93 -0.39 0.95 16 4 N -0.72 -6.15 4.29 -53.81 -0.23 -6.38 16 5 C 0.52 5.19 6.97 -10.99 -0.08 5.11 16 6 O -0.53 -7.34 14.75 5.55 0.08 -7.26 16 7 C -0.04 -0.32 2.50 -91.78 -0.23 -0.54 16 8 C -0.15 -0.87 4.93 -90.62 -0.45 -1.31 16 9 C -0.18 -0.81 10.18 -26.69 -0.27 -1.08 16 10 C -0.17 -0.82 9.88 -26.69 -0.26 -1.08 16 11 C -0.13 -1.00 4.38 -90.61 -0.40 -1.40 16 12 C -0.18 -1.16 10.18 -26.70 -0.27 -1.44 16 13 C -0.16 -1.32 8.98 -26.69 -0.24 -1.56 16 14 C 0.08 0.87 2.28 -67.71 -0.15 0.71 16 15 H 0.05 0.45 7.80 -51.93 -0.40 0.04 16 16 C -0.14 -1.46 9.26 37.16 0.34 -1.11 16 17 N -0.66 -9.99 5.93 -107.99 -0.64 -10.64 16 18 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 19 C 0.45 10.14 7.82 -10.99 -0.09 10.06 16 20 O -0.56 -15.14 15.78 5.55 0.09 -15.06 16 21 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 22 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 23 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 26 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 29 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.86 6.21 -51.93 -0.32 0.54 16 33 H 0.40 2.49 8.28 -40.82 -0.34 2.15 16 34 H 0.09 0.56 7.66 -51.93 -0.40 0.16 16 35 H 0.11 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.10 0.37 8.05 -51.93 -0.42 -0.05 16 37 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.11 0.89 8.11 -51.93 -0.42 0.47 16 41 H 0.09 0.50 8.05 -51.93 -0.42 0.08 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.44 7.44 -51.93 -0.39 0.05 16 47 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 48 H 0.35 5.59 5.87 -39.29 -0.23 5.36 16 49 H 0.09 1.28 7.44 -51.93 -0.39 0.89 16 50 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 51 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 52 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 419.60 15.07 6.32 6.32 Total: -1.00 -33.75 419.60 -9.50 -43.25 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -8.94 Total: 15.01 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.18 Total: -0.76 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.15 Total: -56.03 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.17 Total: -22.32 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.75 -9.50 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275542224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.987 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds