Wall clock time and date at job start Tue Mar 31 2020 20:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27771 * 4 2 1 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2 8 8 C 1.52995 * 109.47490 * 59.99635 * 7 5 4 9 9 C 1.52998 * 117.49798 * 248.74557 * 8 7 5 10 10 C 1.53004 * 117.49989 * 180.08615 * 8 7 5 11 11 C 1.52999 * 109.47004 * 179.97438 * 7 5 4 12 12 C 1.53001 * 117.50114 * 128.74172 * 11 7 5 13 13 C 1.53011 * 117.49952 * 60.08654 * 11 7 5 14 14 C 1.52999 * 109.46645 * 240.00521 * 2 1 3 15 15 H 1.08999 * 109.47014 * 299.99449 * 14 2 1 16 16 C 1.53013 * 109.46546 * 180.02562 * 14 2 1 17 17 N 1.46893 * 109.47605 * 60.00092 * 14 2 1 18 18 C 1.46897 * 111.00101 * 204.99710 * 17 14 2 19 19 C 1.50700 * 109.47431 * 180.02562 * 18 17 14 20 20 O 1.21290 * 119.99756 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00228 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99811 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00453 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99882 * 179.97438 * 22 21 19 25 25 N 1.31404 * 120.00177 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99762 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.47021 * 90.00275 * 26 24 22 28 28 H 1.48501 * 109.47005 * 209.99699 * 26 24 22 29 29 H 1.48493 * 109.47462 * 330.00066 * 26 24 22 30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 32 32 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 33 33 H 0.97001 * 119.99790 * 94.99484 * 4 2 1 34 34 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 35 35 H 1.08996 * 115.55012 * 34.41571 * 8 7 5 36 36 H 1.08992 * 117.50065 * 0.02562 * 9 8 7 37 37 H 1.09010 * 117.49742 * 145.02100 * 9 8 7 38 38 H 1.08998 * 117.49536 * 214.98164 * 10 8 7 39 39 H 1.09000 * 117.49660 * 359.97438 * 10 8 7 40 40 H 1.08992 * 115.55385 * 274.41389 * 11 7 5 41 41 H 1.09002 * 117.49807 * 0.02562 * 12 11 7 42 42 H 1.09003 * 117.50044 * 145.02084 * 12 11 7 43 43 H 1.09002 * 117.49700 * 214.98065 * 13 11 7 44 44 H 1.09001 * 117.49574 * 359.97316 * 13 11 7 45 45 H 1.08999 * 109.46705 * 299.99259 * 16 14 2 46 46 H 1.08991 * 109.47189 * 59.99327 * 16 14 2 47 47 H 1.08997 * 109.46640 * 180.02562 * 16 14 2 48 48 H 1.00898 * 110.99909 * 328.94839 * 17 14 2 49 49 H 1.09006 * 109.47074 * 300.00127 * 18 17 14 50 50 H 1.09001 * 109.47003 * 59.99819 * 18 17 14 51 51 H 0.97000 * 119.99850 * 359.97438 * 21 19 18 52 52 H 0.97003 * 120.00582 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1417 -0.0197 2.3585 6 8 1.8533 1.1571 2.4129 7 6 2.6382 -0.7317 3.5903 8 6 4.0418 -1.2822 3.3305 9 6 4.2000 -2.8015 3.2441 10 6 4.7231 -2.0456 4.4680 11 6 2.6849 0.2501 4.7628 12 6 1.9987 -0.1702 6.0641 13 6 1.3710 0.9124 5.1826 14 6 2.0399 -0.7212 -1.2493 15 1 1.6766 -1.7488 -1.2493 16 6 3.5700 -0.7217 -1.2490 17 7 1.5502 -0.0286 -2.4487 18 6 1.4874 -0.9436 -3.5962 19 6 0.9826 -0.1992 -4.8053 20 8 0.7031 0.9779 -4.7197 21 7 0.8417 -0.8414 -5.9818 22 6 0.3819 -0.1642 -7.0816 23 1 0.1322 0.8837 -7.0052 24 6 0.2371 -0.8262 -8.2947 25 7 -0.2031 -0.1771 -9.3490 26 14 0.6696 -2.6387 -8.4271 27 1 -0.5306 -3.4577 -8.1205 28 1 1.1336 -2.9374 -9.8058 29 1 1.7495 -2.9618 -7.4604 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6319 1.1525 34 1 1.9642 -1.5539 3.8312 35 1 4.6735 -0.6729 2.6842 36 1 3.3040 -3.4089 3.3720 37 1 4.9361 -3.1918 2.5411 38 1 5.8031 -1.9387 4.5698 39 1 4.1715 -2.1553 5.4017 40 1 3.5957 0.8434 4.8432 41 1 1.5142 -1.1464 6.0850 42 1 2.4578 0.1469 7.0005 43 1 1.4175 1.9413 5.5393 44 1 0.4734 0.6489 4.6231 45 1 3.9336 0.3059 -1.2488 46 1 3.9329 -1.2357 -0.3591 47 1 3.9332 -1.2350 -2.1392 48 1 0.6526 0.3993 -2.2780 49 1 2.4829 -1.3374 -3.8018 50 1 0.8110 -1.7672 -3.3675 51 1 1.0656 -1.7827 -6.0504 52 1 -0.3045 -0.6392 -10.1958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275542224.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:43 Heat of formation + Delta-G solvation = -46.714896 kcal Electronic energy + Delta-G solvation = -29405.679361 eV Core-core repulsion = 25405.721533 eV Total energy + Delta-G solvation = -3999.957828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.38206 -40.37139 -39.15031 -38.08512 -37.05121 -36.06218 -35.24609 -33.75035 -32.21131 -30.91328 -29.85731 -28.12141 -25.74989 -24.63358 -23.41713 -23.08883 -22.27512 -22.20289 -21.50402 -21.27141 -20.59173 -20.29524 -18.51564 -17.64821 -17.50501 -16.98148 -16.75501 -16.59113 -16.01765 -15.99149 -15.52837 -15.46001 -15.12891 -14.88532 -14.75051 -14.46446 -14.46123 -14.33782 -14.09022 -13.95099 -13.53046 -13.15311 -12.93613 -12.71357 -12.69286 -12.57633 -12.44701 -12.41383 -12.34022 -12.28386 -12.24299 -11.97110 -11.60853 -11.53201 -11.50747 -11.27559 -11.17566 -10.70936 -10.49519 -10.42205 -10.24922 -10.07657 -9.35013 -8.40771 -6.02085 1.30803 1.36433 1.45725 1.68231 1.95925 2.05357 2.23928 2.75757 2.87187 3.03063 3.15599 3.41025 3.58073 3.63735 3.74985 3.88214 3.96308 4.10018 4.14061 4.15957 4.18956 4.23441 4.33143 4.37882 4.42196 4.45011 4.48520 4.56389 4.59994 4.71973 4.82019 4.84831 4.87641 4.91621 4.98893 5.02469 5.06782 5.13852 5.19263 5.23665 5.27535 5.35822 5.37764 5.41176 5.48988 5.54451 5.91323 6.06297 6.35507 6.59800 6.62059 6.88471 7.33974 7.39924 7.97065 8.76925 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023388 B = 0.001980 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.916759 B =14136.463488 C =14886.464662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.064 0.936 4 N -0.704 5.704 5 C 0.517 3.483 6 O -0.574 6.574 7 C -0.033 4.033 8 C -0.158 4.158 9 C -0.166 4.166 10 C -0.166 4.166 11 C -0.137 4.137 12 C -0.158 4.158 13 C -0.178 4.178 14 C 0.085 3.915 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.685 5.685 18 C 0.064 3.936 19 C 0.447 3.553 20 O -0.616 6.616 21 N -0.589 5.589 22 C -0.329 4.329 23 H 0.053 0.947 24 C -0.017 4.017 25 N -0.935 5.935 26 Si 0.967 3.033 27 H -0.256 1.256 28 H -0.276 1.276 29 H -0.229 1.229 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.414 0.586 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.345 0.655 49 H 0.115 0.885 50 H 0.083 0.917 51 H 0.391 0.609 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -15.205 32.189 36.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.082 0.918 4 N -0.357 5.357 5 C 0.304 3.696 6 O -0.452 6.452 7 C -0.054 4.054 8 C -0.177 4.177 9 C -0.202 4.202 10 C -0.203 4.203 11 C -0.156 4.156 12 C -0.195 4.195 13 C -0.215 4.215 14 C -0.024 4.024 15 H 0.094 0.906 16 C -0.195 4.195 17 N -0.321 5.321 18 C -0.068 4.068 19 C 0.235 3.765 20 O -0.501 6.501 21 N -0.231 5.231 22 C -0.459 4.459 23 H 0.071 0.929 24 C -0.216 4.216 25 N -0.576 5.576 26 Si 0.787 3.213 27 H -0.180 1.180 28 H -0.201 1.201 29 H -0.152 1.152 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.252 0.748 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.167 0.833 49 H 0.133 0.867 50 H 0.101 0.899 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.808 -13.314 31.894 35.926 hybrid contribution -0.808 -0.713 -0.848 1.371 sum 9.000 -14.027 31.045 35.236 Atomic orbital electron populations 1.22193 0.95309 1.02947 1.01862 1.20773 0.93736 0.96897 0.84298 0.91788 1.45806 1.66972 1.14576 1.08368 1.21041 0.76490 0.86889 0.85164 1.90719 1.51073 1.17932 1.85476 1.20443 0.97002 0.97511 0.90443 1.21946 0.95344 0.95509 1.04904 1.23216 1.04154 0.91914 1.00959 1.22996 1.00789 1.02902 0.93619 1.21872 0.97101 1.01564 0.95056 1.23167 1.02678 0.99599 0.94019 1.22755 0.96665 0.98134 1.03979 1.21761 0.96814 0.96644 0.87224 0.90566 1.21806 0.93495 1.01724 1.02451 1.60146 1.35388 1.32818 1.03737 1.21686 1.03184 0.93730 0.88234 1.21030 0.82277 0.87924 0.85294 1.90556 1.55365 1.18700 1.85440 1.42009 1.60517 1.11837 1.08770 1.18999 1.42331 0.96057 0.88487 0.92891 1.26168 0.96396 1.05233 0.93792 1.69809 1.46304 1.39638 1.01813 0.85338 0.80279 0.76260 0.79457 1.17997 1.20148 1.15218 0.90514 0.93018 0.92218 0.74840 0.86796 0.88602 0.87262 0.87760 0.88450 0.87859 0.88444 0.87478 0.87648 0.89694 0.90344 0.94194 0.90130 0.92041 0.83275 0.86706 0.89902 0.77376 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.24 71.98 0.67 -2.80 16 2 C 0.15 3.10 2.29 44.99 0.10 3.20 16 3 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 4 N -0.70 -10.74 4.29 -442.54 -1.90 -12.63 16 5 C 0.52 10.00 6.97 87.66 0.61 10.61 16 6 O -0.57 -16.69 14.75 -3.04 -0.04 -16.74 16 7 C -0.03 -0.41 2.50 -11.54 -0.03 -0.44 16 8 C -0.16 -1.50 4.93 -10.79 -0.05 -1.55 16 9 C -0.17 -0.87 10.18 30.62 0.31 -0.55 16 10 C -0.17 -1.15 9.88 30.62 0.30 -0.84 16 11 C -0.14 -2.03 4.38 -10.79 -0.05 -2.08 16 12 C -0.16 -1.69 10.18 30.62 0.31 -1.38 16 13 C -0.18 -3.06 8.98 30.62 0.27 -2.78 16 14 C 0.09 1.66 2.28 44.92 0.10 1.76 16 15 H 0.08 1.09 7.80 -2.39 -0.02 1.07 16 16 C -0.14 -2.50 9.26 71.99 0.67 -1.83 16 17 N -0.68 -19.78 5.93 -495.57 -2.94 -22.72 16 18 C 0.06 1.86 5.96 85.56 0.51 2.37 16 19 C 0.45 20.04 7.82 87.66 0.69 20.73 16 20 O -0.62 -34.57 15.78 -3.06 -0.05 -34.62 16 21 N -0.59 -27.53 5.09 -306.98 -1.56 -29.09 16 22 C -0.33 -19.36 10.16 84.04 0.85 -18.50 16 23 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 24 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 25 N -0.94 -56.56 13.96 21.66 0.30 -56.25 16 26 Si 0.97 38.23 27.74 68.60 1.90 40.13 16 27 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 28 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 29 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 30 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.43 6.21 -2.38 -0.01 1.41 16 33 H 0.41 3.65 8.28 -92.71 -0.77 2.89 16 34 H 0.11 0.98 7.66 -2.39 -0.02 0.96 16 35 H 0.10 1.19 8.11 -2.39 -0.02 1.17 16 36 H 0.11 0.31 8.05 -2.39 -0.02 0.29 16 37 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 41 H 0.11 0.83 8.05 -2.39 -0.02 0.81 16 42 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 1.02 7.44 -2.39 -0.02 1.00 16 47 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 48 H 0.35 10.93 5.87 -89.70 -0.53 10.41 16 49 H 0.12 2.80 7.44 -2.38 -0.02 2.78 16 50 H 0.08 1.86 8.06 -2.39 -0.02 1.84 16 51 H 0.39 14.84 5.76 -92.71 -0.53 14.30 16 52 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -82.16 419.60 0.50 -81.66 By element: Atomic # 1 Polarization: 45.81 SS G_CDS: -0.95 Total: 44.86 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.74 Total: 5.41 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -6.10 Total: -120.70 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.09 Total: -51.36 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Total: -82.16 0.50 -81.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275542224.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.946 kcal (2) G-P(sol) polarization free energy of solvation -82.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds