Wall clock time and date at job start Tue Mar 31 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46894 * 109.47749 * 184.99952 * 4 2 1 6 6 C 1.46898 * 110.99978 * 293.95815 * 5 4 2 7 7 C 1.46895 * 111.00509 * 170.00271 * 5 4 2 8 8 C 1.50698 * 109.47493 * 190.00589 * 7 5 4 9 9 O 1.21290 * 120.00009 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00412 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00434 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99680 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00221 * 179.97438 * 11 10 8 14 14 N 1.31407 * 119.99877 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99774 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47269 * 90.00180 * 15 13 11 17 17 H 1.48503 * 109.46968 * 210.00093 * 15 13 11 18 18 H 1.48495 * 109.47409 * 330.00071 * 15 13 11 19 19 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 20 20 C 1.34775 * 119.99693 * 275.00198 * 19 2 1 21 21 O 1.21274 * 120.00425 * 359.97438 * 20 19 2 22 22 C 1.50706 * 119.99541 * 179.97438 * 20 19 2 23 23 C 1.53000 * 109.46655 * 179.97438 * 22 20 19 24 24 H 1.08997 * 109.63984 * 304.57729 * 23 22 20 25 25 C 1.53020 * 109.64501 * 64.99984 * 23 22 20 26 26 C 1.50068 * 110.14835 * 169.11697 * 25 23 22 27 27 C 1.29445 * 124.07640 * 342.86986 * 26 25 23 28 28 C 1.50070 * 124.07376 * 0.44377 * 27 26 25 29 29 C 1.53010 * 110.15414 * 342.90698 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 34 34 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 35 35 H 1.08997 * 109.47543 * 59.99915 * 6 5 4 36 36 H 1.09009 * 109.47113 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47568 * 299.99502 * 6 5 4 38 38 H 1.09003 * 109.47139 * 309.99732 * 7 5 4 39 39 H 1.08994 * 109.47255 * 70.00229 * 7 5 4 40 40 H 0.97004 * 120.00028 * 359.97438 * 10 8 7 41 41 H 0.96998 * 119.99854 * 179.97438 * 14 13 11 42 42 H 0.97000 * 120.00117 * 94.99845 * 19 2 1 43 43 H 1.09002 * 109.46644 * 299.99282 * 22 20 19 44 44 H 1.08999 * 109.46969 * 59.99809 * 22 20 19 45 45 H 1.09000 * 109.35893 * 289.32786 * 25 23 22 46 46 H 1.09004 * 109.35929 * 48.91132 * 25 23 22 47 47 H 1.08000 * 117.96133 * 162.84558 * 26 25 23 48 48 H 1.08002 * 117.96098 * 180.47031 * 27 26 25 49 49 H 1.08998 * 109.35662 * 103.10078 * 28 27 26 50 50 H 1.08998 * 109.35524 * 222.82316 * 28 27 26 51 51 H 1.08989 * 109.62930 * 289.72392 * 29 28 27 52 52 H 1.09001 * 109.64382 * 169.09577 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.1310 0.4992 -1.2720 7 6 4.0107 -1.7144 -2.2455 8 6 5.4724 -1.9939 -2.0078 9 8 6.0366 -1.5016 -1.0537 10 7 6.1526 -2.7909 -2.8554 11 6 7.4825 -3.0447 -2.6396 12 1 7.9851 -2.6057 -1.7904 13 6 8.1837 -3.8668 -3.5132 14 7 9.4585 -4.1097 -3.3065 15 14 7.3145 -4.6256 -4.9822 16 1 7.4235 -3.7121 -6.1480 17 1 7.9468 -5.9280 -5.3130 18 1 5.8823 -4.8399 -4.6536 19 7 2.0184 -0.6906 1.1962 20 6 2.1470 -0.0182 2.3571 21 8 1.8590 1.1586 2.4115 22 6 2.6489 -0.7288 3.5878 23 6 2.7010 0.2545 4.7587 24 1 3.3088 1.1172 4.4859 25 6 1.2838 0.7136 5.1085 26 6 1.2892 1.4623 6.4090 27 6 2.2548 1.4139 7.2698 28 6 3.5081 0.6100 7.0830 29 6 3.3036 -0.4385 5.9875 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1584 -2.1369 35 1 3.7912 1.1138 -0.4384 36 1 5.2148 0.3921 -1.2258 37 1 3.8525 0.9757 -2.2119 38 1 3.4545 -2.6518 -2.2298 39 1 3.8857 -1.2339 -3.2157 40 1 5.7013 -3.1849 -3.6183 41 1 9.9479 -4.6838 -3.9161 42 1 2.2491 -1.6318 1.1527 43 1 1.9759 -1.5506 3.8326 44 1 3.6480 -1.1214 3.3986 45 1 0.9096 1.3646 4.3184 46 1 0.6332 -0.1566 5.1952 47 1 0.4343 2.0801 6.6412 48 1 2.1519 1.9876 8.1790 49 1 4.3245 1.2741 6.7992 50 1 3.7585 0.1088 8.0180 51 1 2.6224 -1.2114 6.3430 52 1 4.2625 -0.8842 5.7232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275623199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:10 Heat of formation + Delta-G solvation = -63.599979 kcal Electronic energy + Delta-G solvation = -29613.660223 eV Core-core repulsion = 25612.970203 eV Total energy + Delta-G solvation = -4000.690020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.16105 -38.94497 -38.32282 -36.99457 -34.73976 -33.83843 -32.94474 -31.69929 -31.09125 -30.85169 -28.21325 -27.29579 -26.97512 -24.77692 -23.43017 -22.73396 -21.73074 -20.49519 -20.15405 -19.36615 -18.27113 -18.09392 -17.01825 -16.43030 -16.07695 -15.99367 -15.44243 -14.99428 -14.98796 -14.83212 -14.46899 -14.24392 -14.00209 -13.65444 -13.41349 -13.29884 -13.11726 -12.90959 -12.84233 -12.50216 -12.43149 -12.42636 -12.19757 -12.08802 -11.97594 -11.81401 -11.61103 -11.48444 -11.36648 -11.04678 -10.82104 -10.77120 -10.68561 -10.62080 -10.25742 -9.99850 -9.60476 -9.55940 -9.08783 -8.94103 -8.59964 -8.20569 -8.00488 -6.33195 -3.84617 2.18408 2.76707 2.99792 3.04263 3.12827 3.24835 3.71429 3.86582 4.07949 4.51616 4.56171 4.67342 4.70619 4.76637 4.95016 5.02993 5.09441 5.16066 5.18949 5.22105 5.23217 5.35227 5.36699 5.42380 5.47937 5.54733 5.56107 5.57050 5.62116 5.63672 5.72458 5.76397 5.83613 5.84244 5.85880 5.91733 5.94674 6.02397 6.05252 6.17299 6.32585 6.50698 6.54720 6.59196 6.85626 7.11302 7.24854 7.56323 7.64641 8.12562 8.36387 8.58087 8.93340 9.40364 9.81425 10.79934 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.002312 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.884477 B =12109.871000 C =13561.413864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.087 0.913 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.020 3.980 7 C 0.042 3.958 8 C 0.453 3.547 9 O -0.558 6.558 10 N -0.592 5.592 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.708 5.708 20 C 0.517 3.483 21 O -0.549 6.549 22 C -0.139 4.139 23 C -0.069 4.069 24 H 0.081 0.919 25 C -0.091 4.091 26 C -0.147 4.147 27 C -0.165 4.165 28 C -0.090 4.090 29 C -0.117 4.117 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.015 0.985 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.404 0.596 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.063 0.937 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.129 5.632 11.349 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.086 4.086 5 N -0.238 5.238 6 C -0.127 4.127 7 C -0.090 4.090 8 C 0.238 3.762 9 O -0.439 6.439 10 N -0.231 5.231 11 C -0.433 4.433 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.358 5.358 20 C 0.304 3.696 21 O -0.427 6.427 22 C -0.179 4.179 23 C -0.088 4.088 24 H 0.099 0.901 25 C -0.128 4.128 26 C -0.165 4.165 27 C -0.183 4.183 28 C -0.127 4.127 29 C -0.155 4.155 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.033 0.967 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.202 0.798 41 H 0.084 0.916 42 H 0.239 0.761 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.091 0.909 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.610 6.498 12.411 24.100 hybrid contribution -0.670 -0.848 -2.130 2.388 sum -20.279 5.651 10.281 23.428 Atomic orbital electron populations 1.22145 0.95262 1.02075 1.02484 1.20896 0.93139 0.97683 0.84119 0.89514 1.22504 0.89049 1.00846 0.96251 1.61555 1.03270 1.12330 1.46636 1.22573 1.03028 0.88401 0.98723 1.21914 0.96144 0.97764 0.93133 1.19627 0.87585 0.83726 0.85233 1.90534 1.69772 1.53056 1.30586 1.42223 1.10938 1.44697 1.25264 1.19416 0.83015 1.27993 1.12834 0.86287 1.25040 0.95573 0.97440 0.98152 1.69618 1.07511 1.37267 1.37730 0.86676 0.79489 0.79959 0.83267 1.19693 1.20184 1.19520 1.45846 1.66706 1.14361 1.08934 1.20616 0.77023 0.87285 0.84663 1.90634 1.50747 1.16106 1.85197 1.21770 1.03584 0.99457 0.93052 1.20934 0.97258 0.97824 0.92793 0.90105 1.20638 0.96657 0.99807 0.95717 1.22098 0.98645 0.99844 0.95955 1.22018 0.96230 1.00876 0.99215 1.20422 0.96228 0.97133 0.98887 1.21685 1.01123 0.97718 0.94950 0.91837 0.91899 0.92437 0.90334 0.93637 0.91919 0.88573 0.96696 0.89345 0.93384 0.79776 0.91615 0.76099 0.89191 0.88339 0.89085 0.91667 0.88401 0.88417 0.90897 0.91265 0.91787 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.15 1.60 2.35 -67.93 -0.16 1.44 16 3 H 0.09 1.13 6.23 -51.93 -0.32 0.81 16 4 C 0.04 0.46 4.52 -3.83 -0.02 0.44 16 5 N -0.51 -7.54 4.22 -244.39 -1.03 -8.57 16 6 C 0.02 0.32 8.96 60.06 0.54 0.86 16 7 C 0.04 0.66 5.45 -4.98 -0.03 0.63 16 8 C 0.45 9.85 7.48 -10.99 -0.08 9.77 16 9 O -0.56 -14.33 13.91 5.55 0.08 -14.25 16 10 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 11 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 12 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 13 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 14 N -0.88 -25.46 13.96 55.50 0.77 -24.69 16 15 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 19 N -0.71 -7.85 4.80 -53.80 -0.26 -8.11 16 20 C 0.52 6.34 7.55 -10.98 -0.08 6.26 16 21 O -0.55 -8.33 13.69 5.56 0.08 -8.25 16 22 C -0.14 -1.36 5.18 -27.88 -0.14 -1.51 16 23 C -0.07 -0.71 1.88 -90.40 -0.17 -0.88 16 24 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 25 C -0.09 -0.94 5.03 -28.18 -0.14 -1.08 16 26 C -0.15 -1.44 9.80 -35.90 -0.35 -1.79 16 27 C -0.17 -1.52 9.80 -35.90 -0.35 -1.87 16 28 C -0.09 -0.77 6.12 -28.18 -0.17 -0.95 16 29 C -0.12 -1.03 5.31 -26.52 -0.14 -1.17 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.06 0.96 6.58 -51.93 -0.34 0.62 16 36 H 0.10 1.87 5.82 -51.92 -0.30 1.57 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 39 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.40 4.09 8.60 -40.82 -0.35 3.74 16 43 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.11 6.22 -51.93 -0.32 0.79 16 46 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 47 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.53 8.12 -51.94 -0.42 0.10 16 52 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 409.25 15.07 6.17 6.17 Total: -1.00 -32.76 409.25 -9.17 -41.93 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -9.00 Total: 13.69 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.20 Total: 1.49 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.57 Total: -55.10 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.15 Total: -22.50 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.76 -9.17 -41.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275623199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.666 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds