Wall clock time and date at job start Tue Mar 31 2020 20:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 N 1.46894 * 109.47749 * 184.99952 * 4 2 1 6 6 C 1.46898 * 110.99978 * 293.95815 * 5 4 2 7 7 C 1.46895 * 111.00509 * 170.00271 * 5 4 2 8 8 C 1.50698 * 109.47493 * 190.00589 * 7 5 4 9 9 O 1.21290 * 120.00009 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00412 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00434 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99680 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00221 * 179.97438 * 11 10 8 14 14 N 1.31407 * 119.99877 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99774 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47269 * 90.00180 * 15 13 11 17 17 H 1.48503 * 109.46968 * 210.00093 * 15 13 11 18 18 H 1.48495 * 109.47409 * 330.00071 * 15 13 11 19 19 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 20 20 C 1.34775 * 119.99693 * 275.00198 * 19 2 1 21 21 O 1.21274 * 120.00425 * 359.97438 * 20 19 2 22 22 C 1.50706 * 119.99541 * 179.97438 * 20 19 2 23 23 C 1.53000 * 109.46655 * 179.97438 * 22 20 19 24 24 H 1.08997 * 109.63984 * 304.57729 * 23 22 20 25 25 C 1.53020 * 109.64501 * 64.99984 * 23 22 20 26 26 C 1.50068 * 110.14835 * 169.11697 * 25 23 22 27 27 C 1.29445 * 124.07640 * 342.86986 * 26 25 23 28 28 C 1.50070 * 124.07376 * 0.44377 * 27 26 25 29 29 C 1.53010 * 110.15414 * 342.90698 * 28 27 26 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 34 34 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 35 35 H 1.08997 * 109.47543 * 59.99915 * 6 5 4 36 36 H 1.09009 * 109.47113 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47568 * 299.99502 * 6 5 4 38 38 H 1.09003 * 109.47139 * 309.99732 * 7 5 4 39 39 H 1.08994 * 109.47255 * 70.00229 * 7 5 4 40 40 H 0.97004 * 120.00028 * 359.97438 * 10 8 7 41 41 H 0.96998 * 119.99854 * 179.97438 * 14 13 11 42 42 H 0.97000 * 120.00117 * 94.99845 * 19 2 1 43 43 H 1.09002 * 109.46644 * 299.99282 * 22 20 19 44 44 H 1.08999 * 109.46969 * 59.99809 * 22 20 19 45 45 H 1.09000 * 109.35893 * 289.32786 * 25 23 22 46 46 H 1.09004 * 109.35929 * 48.91132 * 25 23 22 47 47 H 1.08000 * 117.96133 * 162.84558 * 26 25 23 48 48 H 1.08002 * 117.96098 * 180.47031 * 27 26 25 49 49 H 1.08998 * 109.35662 * 103.10078 * 28 27 26 50 50 H 1.08998 * 109.35524 * 222.82316 * 28 27 26 51 51 H 1.08989 * 109.62930 * 289.72392 * 29 28 27 52 52 H 1.09001 * 109.64382 * 169.09577 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.1310 0.4992 -1.2720 7 6 4.0107 -1.7144 -2.2455 8 6 5.4724 -1.9939 -2.0078 9 8 6.0366 -1.5016 -1.0537 10 7 6.1526 -2.7909 -2.8554 11 6 7.4825 -3.0447 -2.6396 12 1 7.9851 -2.6057 -1.7904 13 6 8.1837 -3.8668 -3.5132 14 7 9.4585 -4.1097 -3.3065 15 14 7.3145 -4.6256 -4.9822 16 1 7.4235 -3.7121 -6.1480 17 1 7.9468 -5.9280 -5.3130 18 1 5.8823 -4.8399 -4.6536 19 7 2.0184 -0.6906 1.1962 20 6 2.1470 -0.0182 2.3571 21 8 1.8590 1.1586 2.4115 22 6 2.6489 -0.7288 3.5878 23 6 2.7010 0.2545 4.7587 24 1 3.3088 1.1172 4.4859 25 6 1.2838 0.7136 5.1085 26 6 1.2892 1.4623 6.4090 27 6 2.2548 1.4139 7.2698 28 6 3.5081 0.6100 7.0830 29 6 3.3036 -0.4385 5.9875 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 1.7517 -0.1584 -2.1369 35 1 3.7912 1.1138 -0.4384 36 1 5.2148 0.3921 -1.2258 37 1 3.8525 0.9757 -2.2119 38 1 3.4545 -2.6518 -2.2298 39 1 3.8857 -1.2339 -3.2157 40 1 5.7013 -3.1849 -3.6183 41 1 9.9479 -4.6838 -3.9161 42 1 2.2491 -1.6318 1.1527 43 1 1.9759 -1.5506 3.8326 44 1 3.6480 -1.1214 3.3986 45 1 0.9096 1.3646 4.3184 46 1 0.6332 -0.1566 5.1952 47 1 0.4343 2.0801 6.6412 48 1 2.1519 1.9876 8.1790 49 1 4.3245 1.2741 6.7992 50 1 3.7585 0.1088 8.0180 51 1 2.6224 -1.2114 6.3430 52 1 4.2625 -0.8842 5.7232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275623199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:08 Heat of formation + Delta-G solvation = -87.182686 kcal Electronic energy + Delta-G solvation = -29614.682846 eV Core-core repulsion = 25612.970203 eV Total energy + Delta-G solvation = -4001.712643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.10822 -40.44238 -39.28173 -38.18498 -36.10706 -35.48892 -33.77943 -33.71988 -31.97459 -31.59135 -29.61917 -28.10685 -27.99593 -26.53183 -24.27020 -23.83925 -22.64867 -21.38288 -21.20827 -21.07714 -20.13406 -18.86762 -18.05617 -17.67227 -17.20577 -16.79029 -16.75769 -16.63866 -16.09103 -15.95957 -15.55398 -15.38796 -15.11635 -14.95704 -14.77562 -14.32781 -14.26365 -14.17005 -13.82788 -13.70952 -13.55539 -13.28768 -13.20464 -13.15175 -12.88913 -12.86689 -12.71037 -12.66030 -12.45173 -12.41260 -12.35160 -11.96521 -11.69237 -11.63314 -11.48118 -11.43965 -11.00705 -10.56528 -10.33202 -10.20126 -9.90503 -9.79499 -9.20630 -8.38778 -5.99158 1.31368 1.37222 1.44026 1.46012 1.81300 2.00829 2.24967 2.37578 2.64495 3.17853 3.27408 3.73542 3.79114 3.82578 3.90257 4.10391 4.16968 4.21873 4.30170 4.34873 4.42445 4.43955 4.47191 4.50164 4.55401 4.58817 4.59364 4.71354 4.73381 4.78942 4.81668 4.83003 4.86706 4.96422 5.04769 5.08072 5.12123 5.18405 5.25175 5.32131 5.39661 5.51114 5.55768 5.69947 5.81371 5.91527 6.02109 6.10681 6.18263 6.63092 6.74667 6.92455 7.44083 7.44575 8.02427 8.78999 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.002312 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.884477 B =12109.871000 C =13561.413864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.059 0.941 4 C 0.048 3.952 5 N -0.531 5.531 6 C 0.031 3.969 7 C 0.054 3.946 8 C 0.452 3.548 9 O -0.605 6.605 10 N -0.594 5.594 11 C -0.324 4.324 12 H 0.054 0.946 13 C -0.018 4.018 14 N -0.937 5.937 15 Si 0.965 3.035 16 H -0.260 1.260 17 H -0.277 1.277 18 H -0.227 1.227 19 N -0.703 5.703 20 C 0.510 3.490 21 O -0.584 6.584 22 C -0.134 4.134 23 C -0.068 4.068 24 H 0.050 0.950 25 C -0.086 4.086 26 C -0.164 4.164 27 C -0.165 4.165 28 C -0.094 4.094 29 C -0.114 4.114 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.389 0.611 41 H 0.278 0.722 42 H 0.411 0.589 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.727 3.832 9.718 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.077 0.923 4 C -0.079 4.079 5 N -0.255 5.255 6 C -0.117 4.117 7 C -0.077 4.077 8 C 0.239 3.761 9 O -0.489 6.489 10 N -0.236 5.236 11 C -0.453 4.453 12 H 0.072 0.928 13 C -0.216 4.216 14 N -0.578 5.578 15 Si 0.785 3.215 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.150 1.150 19 N -0.354 5.354 20 C 0.298 3.702 21 O -0.465 6.465 22 C -0.173 4.173 23 C -0.087 4.087 24 H 0.069 0.931 25 C -0.123 4.123 26 C -0.182 4.182 27 C -0.183 4.183 28 C -0.131 4.131 29 C -0.151 4.151 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.224 0.776 41 H 0.087 0.913 42 H 0.247 0.753 43 H 0.135 0.865 44 H 0.115 0.885 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.123 0.877 48 H 0.129 0.871 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.094 0.906 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.247 4.693 10.778 26.050 hybrid contribution 0.501 -0.167 -1.495 1.585 sum -22.746 4.526 9.283 24.981 Atomic orbital electron populations 1.22046 0.93347 1.03177 1.02366 1.20930 0.94514 0.96287 0.84219 0.92298 1.22580 0.86031 1.02738 0.96568 1.61455 1.05729 1.11401 1.46917 1.22324 1.00272 0.89538 0.99575 1.21859 0.91225 1.00029 0.94545 1.20948 0.90125 0.81404 0.83583 1.90532 1.71653 1.54157 1.32535 1.42046 1.09286 1.45724 1.26536 1.18968 0.85454 1.29057 1.11825 0.92812 1.26126 0.96239 0.97372 1.01901 1.69810 1.09925 1.38397 1.39674 0.85366 0.80122 0.78376 0.77648 1.18458 1.20252 1.15038 1.45873 1.66119 1.14605 1.08781 1.21045 0.76563 0.86981 0.85601 1.90623 1.52373 1.17673 1.85793 1.21780 1.03965 0.99767 0.91824 1.20874 0.96971 0.97076 0.93754 0.93135 1.20539 0.96605 0.99843 0.95291 1.22199 0.99472 1.00542 0.95947 1.22224 0.95976 1.00583 0.99502 1.20489 0.95861 0.97131 0.99592 1.21672 1.01381 0.97880 0.94184 0.90309 0.93711 0.90623 0.87518 0.91701 0.92328 0.93038 0.94815 0.85477 0.90498 0.77552 0.91272 0.75324 0.86500 0.88469 0.91464 0.90511 0.87714 0.87107 0.91425 0.89600 0.90581 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.15 2.90 2.35 44.99 0.11 3.00 16 3 H 0.06 1.52 6.23 -2.39 -0.01 1.51 16 4 C 0.05 0.85 4.52 86.30 0.39 1.24 16 5 N -0.53 -14.30 4.22 -927.10 -3.92 -18.22 16 6 C 0.03 0.97 8.96 127.69 1.14 2.11 16 7 C 0.05 1.50 5.45 85.56 0.47 1.96 16 8 C 0.45 19.39 7.48 87.66 0.66 20.04 16 9 O -0.60 -32.32 13.91 -3.06 -0.04 -32.36 16 10 N -0.59 -26.95 5.09 -306.99 -1.56 -28.52 16 11 C -0.32 -18.61 10.16 84.04 0.85 -17.76 16 12 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 13 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 14 N -0.94 -56.18 13.96 21.66 0.30 -55.88 16 15 Si 0.96 37.90 27.74 68.60 1.90 39.81 16 16 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 17 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 19 N -0.70 -14.80 4.80 -442.53 -2.12 -16.93 16 20 C 0.51 12.61 7.55 87.66 0.66 13.28 16 21 O -0.58 -18.51 13.69 -3.01 -0.04 -18.55 16 22 C -0.13 -2.59 5.18 29.85 0.15 -2.44 16 23 C -0.07 -1.42 1.88 -10.65 -0.02 -1.44 16 24 H 0.05 1.35 7.96 -2.39 -0.02 1.33 16 25 C -0.09 -1.79 5.03 29.66 0.15 -1.64 16 26 C -0.16 -3.17 9.80 27.04 0.27 -2.90 16 27 C -0.16 -2.92 9.80 27.04 0.27 -2.65 16 28 C -0.09 -1.55 6.12 29.65 0.18 -1.37 16 29 C -0.11 -1.92 5.31 30.73 0.16 -1.76 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.11 1.36 7.93 -2.39 -0.02 1.34 16 34 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 35 H 0.06 1.84 6.58 -2.39 -0.02 1.82 16 36 H 0.05 2.08 5.82 -2.38 -0.01 2.06 16 37 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.13 2.63 7.93 -2.39 -0.02 2.61 16 39 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 40 H 0.39 14.44 5.76 -92.71 -0.53 13.91 16 41 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.41 7.50 8.60 -92.71 -0.80 6.71 16 43 H 0.12 1.61 8.11 -2.39 -0.02 1.59 16 44 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 1.73 6.22 -2.39 -0.01 1.72 16 46 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 47 H 0.10 1.82 8.06 -2.91 -0.02 1.80 16 48 H 0.11 1.64 8.06 -2.91 -0.02 1.62 16 49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 52 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -79.43 409.25 0.63 -78.80 By element: Atomic # 1 Polarization: 44.78 SS G_CDS: -0.48 Total: 44.31 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.58 Total: 7.54 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -7.30 Total: -119.54 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -0.08 Total: -50.92 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.81 kcal Total: -79.43 0.63 -78.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275623199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.379 kcal (2) G-P(sol) polarization free energy of solvation -79.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds