Wall clock time and date at job start Tue Mar 31 2020 20:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.47101 * 2 1 4 4 N 1.46491 * 109.47202 * 239.99546 * 2 1 3 5 5 C 1.36945 * 120.00096 * 85.00601 * 4 2 1 6 6 H 1.08003 * 119.99270 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00184 * 179.72423 * 5 4 2 8 8 N 1.31623 * 119.99800 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99937 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47019 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46977 * 119.99800 * 9 7 5 12 12 H 1.48497 * 109.47199 * 239.99681 * 9 7 5 13 13 C 1.53002 * 109.46692 * 119.99528 * 2 1 3 14 14 H 1.08998 * 109.51082 * 174.89870 * 13 2 1 15 15 C 1.53293 * 109.51574 * 295.00359 * 13 2 1 16 16 N 1.47143 * 108.38651 * 172.22642 * 15 13 2 17 17 C 1.34785 * 120.98588 * 129.48281 * 16 15 13 18 18 O 1.21281 * 119.99246 * 355.22321 * 17 16 15 19 19 C 1.50691 * 120.00337 * 175.22191 * 17 16 15 20 20 C 1.54140 * 110.74626 * 304.41562 * 19 17 16 21 21 C 1.54449 * 103.21713 * 261.57712 * 20 19 17 22 22 C 1.54835 * 101.97700 * 324.74916 * 21 20 19 23 23 N 1.47854 * 110.77620 * 185.53229 * 19 17 16 24 24 C 1.47956 * 108.37490 * 239.67823 * 23 19 17 25 25 C 1.54841 * 105.06017 * 22.81227 * 24 23 19 26 26 C 1.54135 * 110.74559 * 66.64190 * 19 17 16 27 27 C 1.47156 * 118.03771 * 309.46720 * 16 15 13 28 28 C 1.53296 * 108.38419 * 50.53205 * 27 16 15 29 29 O 1.42961 * 109.22287 * 307.69799 * 28 27 16 30 30 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47223 * 300.00555 * 1 2 3 32 32 H 1.09004 * 109.46693 * 60.00326 * 1 2 3 33 33 H 0.97002 * 120.00868 * 265.00164 * 4 2 1 34 34 H 0.97002 * 119.99419 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68164 * 291.95045 * 15 13 2 36 36 H 1.09003 * 109.67982 * 52.46309 * 15 13 2 37 37 H 1.09006 * 110.73087 * 20.93556 * 20 19 17 38 38 H 1.09002 * 110.73205 * 144.22929 * 20 19 17 39 39 H 1.08999 * 111.31975 * 206.32835 * 21 20 19 40 40 H 1.09002 * 110.39142 * 82.75269 * 21 20 19 41 41 H 1.09000 * 110.32122 * 277.21713 * 22 21 20 42 42 H 1.08996 * 110.41181 * 155.05990 * 22 21 20 43 43 H 1.08995 * 110.32499 * 141.70518 * 24 23 19 44 44 H 1.08993 * 110.32415 * 263.81696 * 24 23 19 45 45 H 1.08999 * 110.99306 * 81.42383 * 25 24 23 46 46 H 1.09005 * 110.98450 * 205.19465 * 25 24 23 47 47 H 1.09002 * 110.73511 * 215.76396 * 26 19 17 48 48 H 1.08992 * 110.73137 * 339.06961 * 26 19 17 49 49 H 1.08998 * 109.68462 * 170.25606 * 27 16 15 50 50 H 1.09001 * 109.67902 * 290.80758 * 27 16 15 51 51 H 1.08994 * 109.51375 * 67.62667 * 28 27 16 52 52 H 1.09001 * 109.51275 * 187.72929 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1493 -0.0076 -2.3757 6 1 1.8921 1.0403 -2.4243 7 6 2.6175 -0.6606 -3.5076 8 7 2.9360 -1.9362 -3.4470 9 14 2.7954 0.2710 -5.1169 10 1 2.3736 1.6815 -4.9215 11 1 4.2135 0.2342 -5.5560 12 1 1.9399 -0.3620 -6.1525 13 6 2.0400 -0.7212 1.2494 14 1 3.1261 -0.8014 1.2056 15 6 1.6349 0.0698 2.4984 16 7 1.9696 -0.7333 3.6851 17 6 2.6762 -0.2047 4.7039 18 8 3.1203 0.9203 4.6143 19 6 2.9145 -1.0115 5.9541 20 6 1.5795 -1.4914 6.5569 21 6 1.3053 -0.4603 7.6736 22 6 2.7338 -0.1562 8.1879 23 7 3.5925 -0.1952 6.9838 24 6 4.8800 -0.8426 7.3189 25 6 5.2251 -1.7139 6.0863 26 6 3.8226 -2.2213 5.6584 27 6 1.5097 -2.1305 3.7270 28 6 1.9210 -2.8143 2.4181 29 8 1.4658 -2.0289 1.3136 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2491 -1.6318 -1.1525 34 1 3.2628 -2.3926 -4.2381 35 1 2.1796 1.0134 2.5281 36 1 0.5627 0.2654 2.4773 37 1 0.7910 -1.4827 5.8043 38 1 1.6878 -2.4849 6.9923 39 1 0.6882 -0.8871 8.4643 40 1 0.8410 0.4344 7.2588 41 1 3.0487 -0.9167 8.9024 42 1 2.7702 0.8317 8.6470 43 1 5.6520 -0.0899 7.4784 44 1 4.7707 -1.4659 8.2063 45 1 5.6802 -1.1135 5.2987 46 1 5.8733 -2.5449 6.3648 47 1 3.5249 -3.0826 6.2564 48 1 3.8078 -2.4643 4.5960 49 1 1.9716 -2.6439 4.5702 50 1 0.4249 -2.1570 3.8300 51 1 3.0066 -2.9029 2.3790 52 1 1.4727 -3.8067 2.3692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276777455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:31 Heat of formation + Delta-G solvation = -64.071869 kcal Electronic energy + Delta-G solvation = -31659.436054 eV Core-core repulsion = 27658.725571 eV Total energy + Delta-G solvation = -4000.710483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.33601 -40.56541 -38.98369 -37.15929 -35.84740 -34.97126 -34.37759 -32.80623 -31.57030 -29.99029 -29.49177 -28.25733 -26.53912 -26.42653 -24.94103 -24.25025 -22.81418 -22.01599 -21.74210 -21.06958 -19.87909 -19.27971 -17.90071 -17.68536 -17.27066 -17.08079 -16.86959 -16.38998 -16.20119 -15.95124 -15.73546 -15.26852 -15.16081 -15.06229 -14.67500 -14.40782 -14.28074 -14.08507 -14.03093 -13.65384 -13.48473 -13.31375 -13.06148 -13.03396 -12.86862 -12.55309 -12.46345 -12.40929 -12.28448 -12.15662 -12.12922 -11.97410 -11.83227 -11.81081 -11.65154 -11.51145 -11.38694 -11.13226 -10.94464 -10.68949 -9.57814 -9.36731 -9.01012 -7.92815 -5.21443 1.46924 1.47718 1.56694 1.57898 1.73157 2.56185 2.77360 2.94060 3.29069 3.40864 3.41967 3.56754 3.65193 3.72301 3.91464 3.93425 3.96209 3.98955 4.05534 4.12981 4.16652 4.29730 4.36000 4.40195 4.46979 4.54230 4.59231 4.60782 4.62588 4.67506 4.71628 4.79918 4.81500 4.84694 4.92771 4.94912 4.98536 5.00872 5.07687 5.09166 5.16354 5.20785 5.23734 5.32319 5.51337 5.61405 5.81001 6.04271 6.24091 6.29076 6.36455 7.16340 7.35246 8.10342 8.35713 9.30894 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021963 B = 0.002711 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.570859 B =10325.696645 C =10502.622806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.054 0.946 4 N -0.732 5.732 5 C -0.238 4.238 6 H 0.075 0.925 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.293 1.293 13 C 0.094 3.906 14 H 0.035 0.965 15 C 0.094 3.906 16 N -0.615 5.615 17 C 0.525 3.475 18 O -0.568 6.568 19 C 0.077 3.923 20 C -0.133 4.133 21 C -0.130 4.130 22 C 0.035 3.965 23 N -0.524 5.524 24 C 0.038 3.962 25 C -0.134 4.134 26 C -0.133 4.133 27 C 0.069 3.931 28 C 0.036 3.964 29 O -0.380 6.380 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.045 0.955 46 H 0.104 0.896 47 H 0.121 0.879 48 H 0.073 0.927 49 H 0.126 0.874 50 H 0.096 0.904 51 H 0.044 0.956 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -5.216 29.429 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.067 3.933 3 H 0.072 0.928 4 N -0.373 5.373 5 C -0.370 4.370 6 H 0.093 0.907 7 C -0.269 4.269 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.222 1.222 12 H -0.220 1.220 13 C 0.034 3.966 14 H 0.053 0.947 15 C -0.029 4.029 16 N -0.349 5.349 17 C 0.314 3.686 18 O -0.445 6.445 19 C -0.017 4.017 20 C -0.171 4.171 21 C -0.168 4.168 22 C -0.092 4.092 23 N -0.248 5.248 24 C -0.089 4.089 25 C -0.172 4.172 26 C -0.171 4.171 27 C -0.052 4.052 28 C -0.041 4.041 29 O -0.298 6.298 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.123 0.877 47 H 0.139 0.861 48 H 0.092 0.908 49 H 0.143 0.857 50 H 0.114 0.886 51 H 0.063 0.937 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.848 -3.946 28.971 29.377 hybrid contribution 0.599 -0.191 -1.116 1.281 sum -2.249 -4.136 27.856 28.251 Atomic orbital electron populations 1.22195 0.96678 1.01291 1.00447 1.20421 0.94049 0.94328 0.84535 0.92805 1.42525 1.78323 1.10465 1.05943 1.19676 1.34746 0.94215 0.88380 0.90662 1.25549 1.02950 0.96961 1.01435 1.69848 1.52449 1.10336 1.29308 0.85089 0.76741 0.78192 0.79854 1.19081 1.22178 1.21982 1.22496 0.95659 0.83974 0.94427 0.94724 1.22163 1.02027 0.94997 0.83748 1.48209 1.55031 1.13697 1.17996 1.21055 0.76258 0.86756 0.84553 1.90650 1.50613 1.21780 1.81493 1.22182 0.97266 0.91534 0.90678 1.23052 0.94317 1.01098 0.98635 1.22653 0.96780 0.98741 0.98621 1.23352 0.92141 1.02197 0.91508 1.64856 1.04203 1.48019 1.07770 1.23308 0.91250 0.96596 0.97753 1.22784 0.97139 0.99857 0.97374 1.23146 0.94355 0.96476 1.03168 1.22939 1.02019 0.80352 0.99926 1.23250 0.99411 0.96064 0.85375 1.88051 1.67644 1.25644 1.48481 0.93255 0.91218 0.94437 0.79230 0.94118 0.90220 0.88903 0.89601 0.86742 0.87507 0.93062 0.90492 0.90853 0.91052 0.90221 0.93631 0.87729 0.86131 0.90793 0.85651 0.88552 0.93720 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.06 71.99 0.65 -4.73 16 2 C 0.18 7.30 2.77 45.00 0.12 7.42 16 3 H 0.05 2.27 8.08 -2.39 -0.02 2.25 16 4 N -0.73 -38.63 5.10 -322.94 -1.65 -40.28 16 5 C -0.24 -13.65 9.93 84.03 0.83 -12.82 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 8 N -0.97 -60.78 13.06 21.65 0.28 -60.49 16 9 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 12 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 13 C 0.09 3.35 2.61 30.69 0.08 3.43 16 14 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 15 C 0.09 2.85 5.84 86.35 0.50 3.35 16 16 N -0.61 -15.62 2.93 -817.36 -2.40 -18.02 16 17 C 0.53 14.84 6.49 87.65 0.57 15.40 16 18 O -0.57 -21.89 15.99 -3.03 -0.05 -21.94 16 19 C 0.08 1.44 0.63 3.36 0.00 1.45 16 20 C -0.13 -1.56 4.76 31.47 0.15 -1.41 16 21 C -0.13 -1.63 7.03 31.71 0.22 -1.41 16 22 C 0.04 0.51 6.73 86.73 0.58 1.09 16 23 N -0.52 -10.84 4.97 -831.22 -4.13 -14.97 16 24 C 0.04 0.61 6.72 86.73 0.58 1.19 16 25 C -0.13 -2.12 7.07 31.96 0.23 -1.89 16 26 C -0.13 -1.87 4.62 31.72 0.15 -1.72 16 27 C 0.07 1.20 4.10 86.35 0.35 1.56 16 28 C 0.04 0.81 6.98 72.08 0.50 1.32 16 29 O -0.38 -12.65 9.24 -148.98 -1.38 -14.03 16 30 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 31 H 0.07 2.06 6.42 -2.39 -0.02 2.04 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.38 21.50 7.59 -92.71 -0.70 20.79 16 34 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.08 2.73 7.06 -2.39 -0.02 2.71 16 36 H 0.09 2.54 6.27 -2.39 -0.01 2.52 16 37 H 0.09 1.04 5.77 -2.38 -0.01 1.03 16 38 H 0.11 0.61 7.36 -2.39 -0.02 0.59 16 39 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.72 7.08 -2.39 -0.02 0.70 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 0.81 7.07 -2.39 -0.02 0.80 16 45 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.12 0.81 7.36 -2.39 -0.02 0.80 16 48 H 0.07 1.20 6.40 -2.39 -0.02 1.18 16 49 H 0.13 1.42 3.78 -2.39 -0.01 1.41 16 50 H 0.10 1.38 7.87 -2.39 -0.02 1.37 16 51 H 0.04 1.07 8.13 -2.39 -0.02 1.05 16 52 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -79.02 386.25 -1.07 -80.09 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.22 Total: 32.06 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 6.00 Total: 8.16 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -7.90 Total: -133.75 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.43 Total: -35.97 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -79.02 -1.07 -80.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.017 kcal (2) G-P(sol) polarization free energy of solvation -79.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds