Wall clock time and date at job start Tue Mar 31 2020 19:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47859 * 179.97438 * 6 5 4 8 8 C 1.46890 * 111.00688 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47411 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99984 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99976 * 180.02562 * 9 8 7 12 12 C 1.37100 * 119.99915 * 179.97438 * 11 9 8 13 13 H 1.07994 * 120.00141 * 359.97438 * 12 11 9 14 14 C 1.38950 * 119.99846 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00223 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99847 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46830 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47210 * 120.00126 * 16 14 12 19 19 H 1.48497 * 109.46912 * 240.00165 * 16 14 12 20 20 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 21 21 C 1.34777 * 119.99688 * 274.99602 * 20 2 1 22 22 O 1.21279 * 119.99974 * 0.02562 * 21 20 2 23 23 C 1.50698 * 119.99799 * 180.02562 * 21 20 2 24 24 C 1.53002 * 110.34455 * 300.70338 * 23 21 20 25 25 C 1.51099 * 110.38518 * 62.99053 * 23 21 20 26 26 C 1.30726 * 110.98911 * 135.15999 * 25 23 21 27 27 C 1.51105 * 111.13906 * 0.15754 * 26 25 23 28 28 C 1.54634 * 104.72267 * 343.46111 * 27 26 25 29 29 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 30 30 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 31 31 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 37 37 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 38 38 H 1.00909 * 110.99304 * 303.95833 * 7 6 5 39 39 H 1.09005 * 109.47135 * 300.00288 * 8 7 6 40 40 H 1.09002 * 109.47335 * 59.99960 * 8 7 6 41 41 H 0.97006 * 120.00554 * 359.97438 * 11 9 8 42 42 H 0.96999 * 119.99793 * 180.02562 * 15 14 12 43 43 H 0.96993 * 119.99992 * 94.99462 * 20 2 1 44 44 H 1.08989 * 109.47358 * 59.29980 * 24 23 21 45 45 H 1.08998 * 109.46720 * 179.30045 * 24 23 21 46 46 H 1.09001 * 109.47082 * 299.29776 * 24 23 21 47 47 H 1.07999 * 124.45222 * 315.22810 * 25 23 21 48 48 H 1.08001 * 124.41145 * 180.02562 * 26 25 23 49 49 H 1.09000 * 110.38567 * 224.65540 * 27 26 25 50 50 H 1.08994 * 110.48085 * 102.32287 * 27 26 25 51 51 H 1.08994 * 111.04335 * 266.60072 * 28 27 26 52 52 H 1.09003 * 111.07142 * 142.68144 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 7 5.5387 -1.2299 -2.6256 8 6 6.0648 -1.9116 -3.8157 9 6 7.5662 -1.7842 -3.8449 10 8 8.1412 -1.1841 -2.9616 11 7 8.2697 -2.3362 -4.8532 12 6 9.6355 -2.2199 -4.8801 13 1 10.1476 -1.6856 -4.0936 14 6 10.3609 -2.7895 -5.9194 15 7 9.7379 -3.4392 -6.8767 16 14 12.2220 -2.6316 -5.9557 17 1 12.6762 -1.8583 -4.7722 18 1 12.8341 -3.9842 -5.9285 19 1 12.6348 -1.9262 -7.1955 20 7 2.0184 -0.6907 1.1962 21 6 2.1471 -0.0184 2.3571 22 8 1.8583 1.1582 2.4117 23 6 2.6500 -0.7288 3.5874 24 6 1.7295 -1.8990 3.9395 25 6 4.0636 -1.2172 3.3723 26 6 4.8128 -0.9550 4.4110 27 6 4.0218 -0.2526 5.4900 28 6 2.7482 0.2560 4.7757 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7515 -1.7715 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4369 -1.3574 35 1 3.9994 -1.0728 -0.4261 36 1 3.7863 -2.3843 -2.5201 37 1 3.6401 -0.8740 -3.4508 38 1 5.8338 -0.2652 -2.6017 39 1 5.7906 -2.9660 -3.7814 40 1 5.6436 -1.4555 -4.7116 41 1 7.8098 -2.8158 -5.5600 42 1 10.2443 -3.8371 -7.6020 43 1 2.2490 -1.6319 1.1525 44 1 1.6933 -2.5972 3.1034 45 1 2.1128 -2.4097 4.8229 46 1 0.7265 -1.5239 4.1433 47 1 4.4084 -1.7155 2.4783 48 1 5.8596 -1.2093 4.4883 49 1 4.5908 0.5849 5.8937 50 1 3.7584 -0.9502 6.2850 51 1 2.8783 1.2799 4.4256 52 1 1.8760 0.1745 5.4244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277271873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:30 Heat of formation + Delta-G solvation = -77.488896 kcal Electronic energy + Delta-G solvation = -28739.040536 eV Core-core repulsion = 24737.748247 eV Total energy + Delta-G solvation = -4001.292289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85927 -38.52164 -38.24977 -36.89642 -35.46996 -33.88971 -32.80128 -31.53691 -31.17184 -30.28836 -29.11655 -27.32160 -25.87713 -25.13226 -23.62455 -22.66147 -21.45450 -20.92769 -20.14591 -19.22126 -19.14000 -17.87672 -17.44614 -16.62219 -16.17915 -15.81839 -15.65698 -15.12992 -14.89111 -14.68771 -14.47529 -14.20715 -13.92147 -13.68845 -13.62890 -13.43076 -13.24965 -13.17312 -12.75341 -12.69483 -12.43592 -12.36888 -12.01251 -11.97755 -11.68786 -11.57386 -11.56423 -11.53260 -11.42556 -11.31981 -11.14694 -11.07650 -10.90237 -10.74932 -10.34356 -10.22379 -9.98778 -9.52055 -9.29621 -9.20551 -8.45725 -8.04781 -7.95647 -6.41846 -3.82569 1.86720 2.51512 2.96964 3.16304 3.26787 3.34301 3.91150 4.05567 4.10949 4.22644 4.26215 4.53259 4.60858 4.67195 4.78066 4.86143 4.90698 4.98071 5.05525 5.16571 5.19496 5.24730 5.26921 5.30129 5.31426 5.35993 5.40019 5.52170 5.53329 5.56589 5.59792 5.67535 5.70414 5.77846 5.80402 5.81396 5.93253 5.96369 5.98817 6.08654 6.17617 6.20264 6.28845 6.32507 6.53353 7.24058 7.29175 7.55459 7.67538 8.03626 8.06827 8.61465 9.18096 9.54541 10.06073 10.76015 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.001890 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.220995 B =14808.685082 C =16316.999816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.670 5.670 8 C 0.051 3.949 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.565 5.565 12 C -0.298 4.298 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.282 1.282 20 N -0.720 5.720 21 C 0.530 3.470 22 O -0.540 6.540 23 C -0.059 4.059 24 C -0.131 4.131 25 C -0.163 4.163 26 C -0.148 4.148 27 C -0.104 4.104 28 C -0.106 4.106 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.349 0.651 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.400 0.600 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.132 0.868 48 H 0.130 0.870 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.089 0.911 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.950 1.739 17.946 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.202 5.202 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.208 1.208 20 N -0.372 5.372 21 C 0.316 3.684 22 O -0.417 6.417 23 C -0.062 4.062 24 C -0.189 4.189 25 C -0.181 4.181 26 C -0.166 4.166 27 C -0.141 4.141 28 C -0.144 4.144 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.235 0.765 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.150 0.850 48 H 0.148 0.852 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.107 0.893 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.589 2.374 18.808 27.988 hybrid contribution 0.563 -0.294 -1.496 1.625 sum -20.026 2.079 17.313 26.554 Atomic orbital electron populations 1.22169 0.95354 1.02038 1.02502 1.20994 0.93744 0.97739 0.83882 0.89385 1.21873 0.96296 1.01095 0.97100 1.21552 0.93988 1.01070 0.98858 1.21973 0.88287 1.00455 0.96330 1.60077 1.08088 1.21485 1.40629 1.21666 0.94993 1.00099 0.91449 1.19833 0.88136 0.84948 0.84468 1.90522 1.71159 1.46258 1.38764 1.41879 1.07441 1.48580 1.22252 1.19756 0.81529 1.32717 1.08772 0.87878 1.25270 1.00716 0.96610 0.95445 1.69621 1.36595 1.36017 1.12134 0.85797 0.82224 0.78005 0.78308 1.19210 1.20732 1.20776 1.46083 1.67425 1.14092 1.09590 1.20417 0.76598 0.87011 0.84346 1.90673 1.50073 1.16027 1.84921 1.20694 0.95064 0.96534 0.93899 1.21747 0.98459 0.96249 1.02418 1.23120 0.93084 1.02118 0.99752 1.23418 0.99345 0.98472 0.95365 1.21422 0.95501 0.99731 0.97419 1.22492 0.97829 0.99542 0.94548 0.92218 0.91611 0.92498 0.91220 0.90333 0.91915 0.90890 0.91267 0.95689 0.83223 0.89689 0.93963 0.77468 0.91940 0.76543 0.91979 0.91242 0.91940 0.85043 0.85198 0.90754 0.90485 0.89290 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.48 37.16 0.35 -0.86 16 2 C 0.14 1.18 2.57 -67.93 -0.17 1.01 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -0.93 4.75 -26.73 -0.13 -1.06 16 5 C -0.12 -1.17 5.36 -26.74 -0.14 -1.31 16 6 C 0.06 0.70 5.68 -3.83 -0.02 0.67 16 7 N -0.67 -10.90 6.13 -115.06 -0.70 -11.60 16 8 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 9 C 0.44 10.54 7.82 -10.99 -0.09 10.46 16 10 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 11 N -0.56 -14.45 5.29 -10.97 -0.06 -14.51 16 12 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 13 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 15 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 16 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 N -0.72 -5.95 4.38 -53.80 -0.24 -6.19 16 21 C 0.53 5.55 6.51 -10.99 -0.07 5.48 16 22 O -0.54 -7.64 15.16 5.56 0.08 -7.56 16 23 C -0.06 -0.49 0.73 -155.76 -0.11 -0.61 16 24 C -0.13 -0.81 8.39 37.16 0.31 -0.50 16 25 C -0.16 -1.39 9.36 -35.76 -0.33 -1.72 16 26 C -0.15 -1.22 10.78 -35.75 -0.39 -1.60 16 27 C -0.10 -0.76 6.81 -26.83 -0.18 -0.94 16 28 C -0.11 -0.91 6.00 -25.01 -0.15 -1.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.35 5.94 8.43 -39.29 -0.33 5.61 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.40 2.57 8.03 -40.82 -0.33 2.24 16 44 H 0.06 0.32 7.58 -51.94 -0.39 -0.07 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.95 7.02 -51.93 -0.36 0.58 16 52 H 0.08 0.55 7.90 -51.93 -0.41 0.14 16 LS Contribution 424.01 15.07 6.39 6.39 Total: -1.00 -33.47 424.01 -9.36 -42.82 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -9.22 Total: 13.66 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.40 Total: 0.77 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.27 Total: -56.22 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.47 -9.36 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277271873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.666 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds