Wall clock time and date at job start Tue Mar 31 2020 19:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47859 * 179.97438 * 6 5 4 8 8 C 1.46890 * 111.00688 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47411 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99984 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99976 * 180.02562 * 9 8 7 12 12 C 1.37100 * 119.99915 * 179.97438 * 11 9 8 13 13 H 1.07994 * 120.00141 * 359.97438 * 12 11 9 14 14 C 1.38950 * 119.99846 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00223 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99847 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46830 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47210 * 120.00126 * 16 14 12 19 19 H 1.48497 * 109.46912 * 240.00165 * 16 14 12 20 20 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 21 21 C 1.34777 * 119.99688 * 274.99602 * 20 2 1 22 22 O 1.21279 * 119.99974 * 0.02562 * 21 20 2 23 23 C 1.50698 * 119.99799 * 180.02562 * 21 20 2 24 24 C 1.53002 * 110.34455 * 300.70338 * 23 21 20 25 25 C 1.51099 * 110.38518 * 62.99053 * 23 21 20 26 26 C 1.30726 * 110.98911 * 135.15999 * 25 23 21 27 27 C 1.51105 * 111.13906 * 0.15754 * 26 25 23 28 28 C 1.54634 * 104.72267 * 343.46111 * 27 26 25 29 29 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 30 30 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 31 31 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 37 37 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 38 38 H 1.00909 * 110.99304 * 303.95833 * 7 6 5 39 39 H 1.09005 * 109.47135 * 300.00288 * 8 7 6 40 40 H 1.09002 * 109.47335 * 59.99960 * 8 7 6 41 41 H 0.97006 * 120.00554 * 359.97438 * 11 9 8 42 42 H 0.96999 * 119.99793 * 180.02562 * 15 14 12 43 43 H 0.96993 * 119.99992 * 94.99462 * 20 2 1 44 44 H 1.08989 * 109.47358 * 59.29980 * 24 23 21 45 45 H 1.08998 * 109.46720 * 179.30045 * 24 23 21 46 46 H 1.09001 * 109.47082 * 299.29776 * 24 23 21 47 47 H 1.07999 * 124.45222 * 315.22810 * 25 23 21 48 48 H 1.08001 * 124.41145 * 180.02562 * 26 25 23 49 49 H 1.09000 * 110.38567 * 224.65540 * 27 26 25 50 50 H 1.08994 * 110.48085 * 102.32287 * 27 26 25 51 51 H 1.08994 * 111.04335 * 266.60072 * 28 27 26 52 52 H 1.09003 * 111.07142 * 142.68144 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 7 5.5387 -1.2299 -2.6256 8 6 6.0648 -1.9116 -3.8157 9 6 7.5662 -1.7842 -3.8449 10 8 8.1412 -1.1841 -2.9616 11 7 8.2697 -2.3362 -4.8532 12 6 9.6355 -2.2199 -4.8801 13 1 10.1476 -1.6856 -4.0936 14 6 10.3609 -2.7895 -5.9194 15 7 9.7379 -3.4392 -6.8767 16 14 12.2220 -2.6316 -5.9557 17 1 12.6762 -1.8583 -4.7722 18 1 12.8341 -3.9842 -5.9285 19 1 12.6348 -1.9262 -7.1955 20 7 2.0184 -0.6907 1.1962 21 6 2.1471 -0.0184 2.3571 22 8 1.8583 1.1582 2.4117 23 6 2.6500 -0.7288 3.5874 24 6 1.7295 -1.8990 3.9395 25 6 4.0636 -1.2172 3.3723 26 6 4.8128 -0.9550 4.4110 27 6 4.0218 -0.2526 5.4900 28 6 2.7482 0.2560 4.7757 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.7515 -1.7715 -1.2057 33 1 1.6053 -0.2617 -2.1370 34 1 3.8531 0.4369 -1.3574 35 1 3.9994 -1.0728 -0.4261 36 1 3.7863 -2.3843 -2.5201 37 1 3.6401 -0.8740 -3.4508 38 1 5.8338 -0.2652 -2.6017 39 1 5.7906 -2.9660 -3.7814 40 1 5.6436 -1.4555 -4.7116 41 1 7.8098 -2.8158 -5.5600 42 1 10.2443 -3.8371 -7.6020 43 1 2.2490 -1.6319 1.1525 44 1 1.6933 -2.5972 3.1034 45 1 2.1128 -2.4097 4.8229 46 1 0.7265 -1.5239 4.1433 47 1 4.4084 -1.7155 2.4783 48 1 5.8596 -1.2093 4.4883 49 1 4.5908 0.5849 5.8937 50 1 3.7584 -0.9502 6.2850 51 1 2.8783 1.2799 4.4256 52 1 1.8760 0.1745 5.4244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277271873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:29 Heat of formation + Delta-G solvation = -100.689073 kcal Electronic energy + Delta-G solvation = -28740.046571 eV Core-core repulsion = 24737.748247 eV Total energy + Delta-G solvation = -4002.298324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.60015 -40.17291 -39.15137 -37.84653 -36.62889 -35.85793 -33.69179 -33.25830 -32.25110 -31.02741 -29.76304 -28.65298 -26.69449 -26.43225 -24.95003 -23.47311 -22.35521 -21.66140 -21.04844 -20.80674 -19.91684 -19.83936 -18.14696 -17.79890 -17.41768 -17.04912 -16.53235 -16.46752 -16.04134 -15.86491 -15.63912 -15.52120 -15.18895 -14.98918 -14.37159 -14.34206 -14.18399 -14.05443 -13.87646 -13.52859 -13.37245 -13.30878 -13.09959 -12.98550 -12.96790 -12.76763 -12.61465 -12.42364 -12.32302 -12.22567 -12.19062 -12.13877 -12.07955 -11.81577 -11.70259 -11.54729 -11.51653 -10.78164 -10.36394 -10.05516 -10.02747 -9.86617 -9.31611 -8.47950 -5.96733 1.20530 1.35922 1.41320 1.55597 1.72305 2.03792 2.27478 2.28515 2.92121 3.19200 3.46408 3.50007 3.59651 3.76635 3.96070 4.02237 4.06334 4.14673 4.28551 4.30540 4.33315 4.38949 4.44003 4.52262 4.58603 4.61411 4.65369 4.70714 4.76254 4.79023 4.82496 4.88589 4.92780 4.95809 4.98388 5.07353 5.17212 5.19043 5.26642 5.31206 5.31795 5.39667 5.41102 5.55880 5.62003 5.89068 5.90146 6.12629 6.38965 6.58328 6.59089 7.11566 7.28348 7.54942 8.10456 8.69636 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.001890 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.220995 B =14808.685082 C =16316.999816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.060 0.940 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.062 3.938 7 N -0.688 5.688 8 C 0.065 3.935 9 C 0.436 3.564 10 O -0.625 6.625 11 N -0.573 5.573 12 C -0.334 4.334 13 H 0.077 0.923 14 C -0.014 4.014 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.274 1.274 18 H -0.270 1.270 19 H -0.270 1.270 20 N -0.709 5.709 21 C 0.524 3.476 22 O -0.585 6.585 23 C -0.056 4.056 24 C -0.127 4.127 25 C -0.173 4.173 26 C -0.154 4.154 27 C -0.100 4.100 28 C -0.110 4.110 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.340 0.660 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.411 0.589 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.076 0.924 50 H 0.096 0.904 51 H 0.060 0.940 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.956 0.053 17.570 28.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.067 4.067 7 N -0.320 5.320 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.463 4.463 13 H 0.095 0.905 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.195 1.195 19 H -0.195 1.195 20 N -0.361 5.361 21 C 0.312 3.688 22 O -0.465 6.465 23 C -0.059 4.059 24 C -0.185 4.185 25 C -0.192 4.192 26 C -0.172 4.172 27 C -0.137 4.137 28 C -0.148 4.148 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.158 0.842 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.248 0.752 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.094 0.906 50 H 0.114 0.886 51 H 0.079 0.921 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.628 0.639 18.402 28.405 hybrid contribution 0.854 0.258 -1.371 1.636 sum -20.774 0.897 17.031 26.878 Atomic orbital electron populations 1.22099 0.94240 1.02945 1.02067 1.20982 0.94545 0.96541 0.84363 0.92179 1.21785 0.94077 1.02325 0.96850 1.21480 0.95815 0.99786 0.97775 1.22076 0.85439 1.01690 0.97481 1.60109 1.11013 1.20864 1.39968 1.21535 0.90132 1.01816 0.93214 1.20950 0.90749 0.83017 0.82947 1.90490 1.72871 1.47700 1.40123 1.41945 1.06903 1.49186 1.23011 1.19690 0.83075 1.34352 1.09212 0.90465 1.26050 1.04958 0.95692 0.94625 1.69673 1.38222 1.35832 1.12317 0.84869 0.76836 0.78368 0.78249 1.19902 1.19472 1.19548 1.46040 1.66445 1.14527 1.09057 1.20861 0.75998 0.86586 0.85398 1.90651 1.52192 1.17969 1.85680 1.20715 0.95430 0.97006 0.92740 1.21750 0.97870 0.95466 1.03377 1.23196 0.93295 1.02650 1.00020 1.23632 0.99759 0.98161 0.95629 1.21434 0.94685 1.00086 0.97490 1.22488 0.99059 0.98162 0.95075 0.94273 0.90471 0.90823 0.89097 0.89040 0.93453 0.91848 0.89817 0.94297 0.84182 0.87600 0.91667 0.76902 0.91258 0.75209 0.90741 0.90205 0.91859 0.84954 0.84543 0.90560 0.88590 0.92090 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 71.98 0.68 -1.43 16 2 C 0.14 2.24 2.57 44.99 0.12 2.35 16 3 H 0.06 1.32 7.58 -2.39 -0.02 1.31 16 4 C -0.11 -1.40 4.75 30.59 0.15 -1.25 16 5 C -0.11 -2.06 5.36 30.59 0.16 -1.89 16 6 C 0.06 1.30 5.68 86.30 0.49 1.79 16 7 N -0.69 -21.53 6.13 -517.95 -3.17 -24.70 16 8 C 0.07 2.22 6.17 85.56 0.53 2.75 16 9 C 0.44 20.96 7.82 87.66 0.69 21.64 16 10 O -0.63 -35.31 15.78 -3.06 -0.05 -35.36 16 11 N -0.57 -29.61 5.29 -306.99 -1.62 -31.23 16 12 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 15 N -0.92 -49.56 13.05 21.66 0.28 -49.27 16 16 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 N -0.71 -11.25 4.38 -442.53 -1.94 -13.19 16 21 C 0.52 11.16 6.51 87.66 0.57 11.73 16 22 O -0.58 -17.46 15.16 -3.03 -0.05 -17.50 16 23 C -0.06 -0.91 0.73 -52.99 -0.04 -0.95 16 24 C -0.13 -1.37 8.39 71.98 0.60 -0.77 16 25 C -0.17 -2.88 9.36 26.05 0.24 -2.64 16 26 C -0.15 -2.44 10.78 26.06 0.28 -2.16 16 27 C -0.10 -1.39 6.81 30.53 0.21 -1.18 16 28 C -0.11 -1.89 6.00 31.71 0.19 -1.70 16 29 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.30 7.75 -2.39 -0.02 1.28 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.34 11.56 8.43 -89.69 -0.76 10.81 16 39 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.40 19.33 7.90 -92.70 -0.73 18.60 16 42 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.41 4.62 8.03 -92.71 -0.74 3.87 16 44 H 0.07 0.61 7.58 -2.39 -0.02 0.59 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 48 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 49 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.06 1.40 7.02 -2.39 -0.02 1.38 16 52 H 0.09 1.25 7.90 -2.39 -0.02 1.23 16 Total: -1.00 -74.34 424.01 0.32 -74.02 By element: Atomic # 1 Polarization: 45.71 SS G_CDS: -1.31 Total: 44.40 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 6.15 Total: 7.73 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -6.45 Total: -118.39 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.09 Total: -52.86 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.34 0.32 -74.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277271873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.665 kcal (2) G-P(sol) polarization free energy of solvation -74.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds