Wall clock time and date at job start Tue Mar 31 2020 20:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46502 * 2 1 4 4 N 1.46899 * 109.46968 * 240.00017 * 2 1 3 5 5 C 1.46897 * 111.00294 * 84.99776 * 4 2 1 6 6 C 1.50695 * 109.47166 * 179.97438 * 5 4 2 7 7 O 1.21293 * 120.00162 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00218 * 180.02562 * 6 5 4 9 9 C 1.37099 * 120.00391 * 179.97438 * 8 6 5 10 10 H 1.08004 * 119.99636 * 359.97438 * 9 8 6 11 11 C 1.38941 * 120.00022 * 179.97438 * 9 8 6 12 12 N 1.31410 * 120.00279 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99871 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47158 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47582 * 60.00054 * 13 11 9 16 16 H 1.48501 * 109.47256 * 299.99997 * 13 11 9 17 17 C 1.53001 * 109.46911 * 119.99570 * 2 1 3 18 18 H 1.08996 * 110.88708 * 60.91884 * 17 2 1 19 19 C 1.55153 * 111.00467 * 296.99272 * 17 2 1 20 20 C 1.54330 * 102.93899 * 206.42563 * 19 17 2 21 21 N 1.47020 * 107.27341 * 22.19453 * 20 19 17 22 22 C 1.34768 * 125.64809 * 181.02395 * 21 20 19 23 23 O 1.21289 * 119.99941 * 180.02562 * 22 21 20 24 24 C 1.50702 * 120.00339 * 0.04185 * 22 21 20 25 25 C 1.53006 * 109.47328 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.46936 * 179.97438 * 25 24 22 27 27 C 1.53007 * 117.49513 * 243.74711 * 26 25 24 28 28 C 1.52998 * 117.49852 * 175.08745 * 26 25 24 29 29 C 1.47426 * 108.70114 * 1.05784 * 21 20 19 30 30 H 1.09000 * 109.47092 * 305.28632 * 1 2 3 31 31 H 1.08999 * 109.47454 * 65.29305 * 1 2 3 32 32 H 1.09005 * 109.46963 * 185.29141 * 1 2 3 33 33 H 1.00903 * 110.99818 * 208.95294 * 4 2 1 34 34 H 1.09004 * 109.46527 * 59.99969 * 5 4 2 35 35 H 1.09000 * 109.46773 * 300.00173 * 5 4 2 36 36 H 0.96999 * 119.99503 * 359.97438 * 8 6 5 37 37 H 0.97000 * 119.99835 * 359.97438 * 12 11 9 38 38 H 1.08997 * 110.72307 * 324.78739 * 19 17 2 39 39 H 1.09002 * 110.72294 * 88.06746 * 19 17 2 40 40 H 1.09000 * 109.88229 * 262.77299 * 20 19 17 41 41 H 1.08999 * 110.01195 * 141.68654 * 20 19 17 42 42 H 1.09001 * 109.46725 * 299.99797 * 24 22 21 43 43 H 1.08992 * 109.47401 * 59.99573 * 24 22 21 44 44 H 1.09004 * 109.46614 * 299.99935 * 25 24 22 45 45 H 1.09001 * 109.46982 * 59.99831 * 25 24 22 46 46 H 1.08996 * 115.54973 * 29.41326 * 26 25 24 47 47 H 1.08998 * 117.49648 * 359.97438 * 27 26 25 48 48 H 1.09000 * 117.49881 * 145.02148 * 27 26 25 49 49 H 1.08994 * 117.50356 * 214.97818 * 28 26 25 50 50 H 1.09008 * 117.49922 * 359.97438 * 28 26 25 51 51 H 1.09005 * 110.36614 * 217.03514 * 29 21 20 52 52 H 1.08999 * 110.45992 * 94.75788 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5884 -0.5216 -3.5557 7 8 2.8696 -1.6984 -3.4697 8 7 2.7295 0.1206 -4.7322 9 6 3.1904 -0.5562 -5.8318 10 1 3.4408 -1.6040 -5.7551 11 6 3.3353 0.1058 -7.0447 12 7 3.0302 1.3806 -7.1381 13 14 3.9639 -0.8163 -8.5427 14 1 4.0265 0.1086 -9.7030 15 1 3.0440 -1.9394 -8.8548 16 1 5.3204 -1.3511 -8.2616 17 6 2.0400 -0.7212 1.2493 18 1 1.7029 -1.7576 1.2646 19 6 1.6055 0.0249 2.5384 20 6 2.6968 -0.3752 3.5537 21 7 3.8795 -0.7872 2.7836 22 6 5.0418 -1.2276 3.3047 23 8 5.9551 -1.5414 2.5709 24 6 5.2066 -1.3305 4.7992 25 6 6.6080 -1.8522 5.1231 26 6 6.7754 -1.9561 6.6403 27 6 7.8307 -1.0639 7.2972 28 6 8.0741 -2.5697 7.1674 29 6 3.5838 -0.6380 1.3471 30 1 -0.3633 0.5936 0.8389 31 1 -0.3634 0.4295 -0.9336 32 1 -0.3633 -1.0233 0.0948 33 1 2.9173 -1.1205 -1.0287 34 1 2.7589 1.0461 -2.1182 35 1 1.0870 0.6162 -2.5525 36 1 2.5050 1.0618 -4.8009 37 1 2.7034 1.8593 -6.3603 38 1 1.6045 1.1031 2.3783 39 1 0.6256 -0.3177 2.8707 40 1 2.3462 -1.2052 4.1671 41 1 2.9456 0.4753 4.1885 42 1 5.0730 -0.3462 5.2480 43 1 4.4612 -2.0170 5.2005 44 1 6.7420 -2.8364 4.6741 45 1 7.3531 -1.1652 4.7218 46 1 5.8620 -2.1521 7.2017 47 1 8.4059 -0.4034 6.6484 48 1 7.6117 -0.6735 8.2911 49 1 8.0152 -3.1691 8.0757 50 1 8.8091 -2.8998 6.4331 51 1 4.0440 -1.4466 0.7791 52 1 3.9354 0.3277 0.9840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278991811.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:57 Heat of formation + Delta-G solvation = -83.959199 kcal Electronic energy + Delta-G solvation = -28742.904708 eV Core-core repulsion = 24741.331846 eV Total energy + Delta-G solvation = -4001.572862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32561 -40.40018 -39.37028 -38.32795 -37.07707 -36.27794 -33.68554 -33.19658 -32.78752 -30.69369 -29.93754 -27.93018 -26.44228 -25.76259 -23.95147 -23.22423 -22.95040 -21.55111 -21.33575 -21.04583 -20.16910 -19.98608 -18.44596 -18.10650 -17.47489 -16.96124 -16.88465 -16.54695 -16.32151 -15.94103 -15.71423 -15.47570 -15.41535 -14.94438 -14.78724 -14.51805 -14.39255 -14.30692 -13.74031 -13.47758 -13.36607 -13.34725 -13.19648 -13.08703 -12.82455 -12.66788 -12.49016 -12.38560 -12.28855 -12.16657 -11.97586 -11.93420 -11.90627 -11.75074 -11.55737 -11.52847 -11.25829 -10.91377 -10.78380 -10.44137 -10.13720 -9.73648 -9.41937 -8.95453 -6.09263 1.50364 1.52573 1.55467 1.81044 1.90766 1.97718 2.38185 2.75857 2.89471 3.13965 3.28330 3.38641 3.55412 3.64505 3.75836 3.79775 4.01327 4.05057 4.09114 4.21330 4.23557 4.29141 4.31283 4.33917 4.37356 4.41292 4.48129 4.53989 4.60025 4.62502 4.71235 4.79518 4.81796 4.90979 4.94812 4.99885 5.03156 5.04940 5.08499 5.12495 5.22529 5.26473 5.32732 5.41790 5.45361 5.57307 5.92377 6.00353 6.28523 6.47087 6.55430 6.71849 7.08700 7.41187 7.89804 8.52305 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.001896 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.386460 B =14765.941088 C =16306.023408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.095 3.905 3 H 0.056 0.944 4 N -0.682 5.682 5 C 0.067 3.933 6 C 0.439 3.561 7 O -0.620 6.620 8 N -0.586 5.586 9 C -0.413 4.413 10 H 0.071 0.929 11 C -0.041 4.041 12 N -0.915 5.915 13 Si 1.134 2.866 14 H -0.270 1.270 15 H -0.272 1.272 16 H -0.275 1.275 17 C -0.092 4.092 18 H 0.086 0.914 19 C -0.113 4.113 20 C 0.094 3.906 21 N -0.620 5.620 22 C 0.512 3.488 23 O -0.598 6.598 24 C -0.117 4.117 25 C -0.074 4.074 26 C -0.151 4.151 27 C -0.180 4.180 28 C -0.190 4.190 29 C 0.101 3.899 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.339 0.661 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.385 0.615 37 H 0.259 0.741 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.126 0.874 47 H 0.086 0.914 48 H 0.109 0.891 49 H 0.106 0.894 50 H 0.083 0.917 51 H 0.044 0.956 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 1.919 33.130 33.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.014 4.014 3 H 0.074 0.926 4 N -0.315 5.315 5 C -0.066 4.066 6 C 0.227 3.773 7 O -0.505 6.505 8 N -0.225 5.225 9 C -0.542 4.542 10 H 0.089 0.911 11 C -0.240 4.240 12 N -0.554 5.554 13 Si 0.953 3.047 14 H -0.195 1.195 15 H -0.198 1.198 16 H -0.200 1.200 17 C -0.111 4.111 18 H 0.104 0.896 19 C -0.151 4.151 20 C -0.027 4.027 21 N -0.353 5.353 22 C 0.303 3.697 23 O -0.480 6.480 24 C -0.156 4.156 25 C -0.112 4.112 26 C -0.169 4.169 27 C -0.217 4.217 28 C -0.227 4.227 29 C -0.023 4.023 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.219 0.781 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.144 0.856 47 H 0.105 0.895 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.102 0.898 51 H 0.063 0.937 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.617 0.874 31.072 31.194 hybrid contribution 0.713 0.637 1.086 1.447 sum -1.905 1.511 32.158 32.250 Atomic orbital electron populations 1.21795 0.92757 1.02472 1.02239 1.21645 0.97178 0.95642 0.86951 0.92632 1.60208 1.34409 1.32730 1.04162 1.21581 1.02271 0.93635 0.89097 1.20942 0.83021 0.88032 0.85307 1.90502 1.56181 1.18372 1.85474 1.41983 1.59443 1.11980 1.09077 1.20525 1.45685 0.97310 0.90661 0.91076 1.27829 0.96210 0.96772 1.03147 1.70970 1.42605 1.09004 1.32786 0.82636 0.76618 0.74019 0.71416 1.19473 1.19788 1.20025 1.22439 0.91929 1.01306 0.95437 0.89561 1.22736 0.99360 1.01400 0.91624 1.22409 0.83818 1.01597 0.94853 1.48672 1.14446 1.64680 1.07482 1.21345 0.80229 0.75459 0.92631 1.90722 1.41672 1.51725 1.63841 1.21638 0.99651 1.05752 0.88594 1.20865 0.95727 1.00799 0.93824 1.22329 0.94797 1.05423 0.94364 1.23129 1.02670 0.93169 1.02726 1.23054 0.99633 0.96532 1.03446 1.22235 0.96781 1.00386 0.82862 0.89248 0.93554 0.92683 0.84228 0.91839 0.87390 0.78076 0.92981 0.89071 0.86921 0.89005 0.88736 0.86224 0.86144 0.92897 0.93154 0.85620 0.89537 0.87304 0.87514 0.89834 0.93717 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.17 71.98 0.66 -1.72 16 2 C 0.10 1.99 2.16 44.92 0.10 2.09 16 3 H 0.06 1.07 7.78 -2.39 -0.02 1.05 16 4 N -0.68 -21.73 5.93 -495.58 -2.94 -24.67 16 5 C 0.07 2.31 5.96 85.56 0.51 2.82 16 6 C 0.44 21.68 7.82 87.66 0.69 22.37 16 7 O -0.62 -36.13 15.78 -3.07 -0.05 -36.18 16 8 N -0.59 -30.72 5.28 -306.99 -1.62 -32.34 16 9 C -0.41 -24.35 9.68 84.04 0.81 -23.54 16 10 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 11 C -0.04 -2.30 5.50 84.92 0.47 -1.83 16 12 N -0.91 -51.88 13.68 21.66 0.30 -51.58 16 13 Si 1.13 49.86 29.92 68.60 2.05 51.91 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 C -0.09 -1.62 2.68 -9.40 -0.03 -1.64 16 18 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 19 C -0.11 -0.98 5.52 31.78 0.18 -0.80 16 20 C 0.09 0.84 6.49 86.73 0.56 1.40 16 21 N -0.62 -12.00 3.33 -811.78 -2.70 -14.70 16 22 C 0.51 11.98 7.85 87.66 0.69 12.66 16 23 O -0.60 -20.92 16.24 -3.06 -0.05 -20.97 16 24 C -0.12 -1.52 4.85 29.85 0.14 -1.38 16 25 C -0.07 -1.23 4.79 30.60 0.15 -1.08 16 26 C -0.15 -1.72 5.73 -10.79 -0.06 -1.78 16 27 C -0.18 -1.97 10.18 30.62 0.31 -1.66 16 28 C -0.19 -2.28 10.25 30.62 0.31 -1.96 16 29 C 0.10 2.38 5.57 86.86 0.48 2.87 16 30 H 0.09 0.97 7.58 -2.39 -0.02 0.95 16 31 H 0.05 0.94 7.35 -2.39 -0.02 0.92 16 32 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.34 12.10 6.85 -89.69 -0.61 11.49 16 34 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 35 H 0.11 3.31 7.36 -2.39 -0.02 3.29 16 36 H 0.39 18.40 6.73 -92.71 -0.62 17.78 16 37 H 0.26 14.20 6.78 -92.71 -0.63 13.57 16 38 H 0.09 0.64 8.04 -2.39 -0.02 0.62 16 39 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 45 H 0.05 1.03 7.83 -2.39 -0.02 1.01 16 46 H 0.13 0.92 8.07 -2.39 -0.02 0.90 16 47 H 0.09 1.08 8.03 -2.39 -0.02 1.06 16 48 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 51 H 0.04 1.39 7.57 -2.38 -0.02 1.37 16 52 H 0.06 1.45 8.02 -2.39 -0.02 1.43 16 Total: -1.00 -82.94 418.42 0.78 -82.17 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -0.18 Total: 39.55 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.97 Total: 6.81 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -6.97 Total: -123.30 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.10 Total: -57.15 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.91 kcal Total: -82.94 0.78 -82.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278991811.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.793 kcal (2) G-P(sol) polarization free energy of solvation -82.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds