Wall clock time and date at job start Tue Mar 31 2020 20:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46943 * 2 1 4 4 N 1.46895 * 109.47253 * 240.00072 * 2 1 3 5 5 C 1.46895 * 111.00085 * 85.00098 * 4 2 1 6 6 C 1.50708 * 109.47178 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99812 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99917 * 180.02562 * 6 5 4 9 9 C 1.37103 * 120.00015 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99700 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00252 * 179.97438 * 9 8 6 12 12 N 1.31413 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00316 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46918 * 60.00062 * 13 11 9 15 15 H 1.48500 * 109.47400 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47107 * 300.00188 * 13 11 9 17 17 C 1.52996 * 109.47074 * 119.99986 * 2 1 3 18 18 H 1.09005 * 110.88969 * 63.87906 * 17 2 1 19 19 C 1.55155 * 111.00532 * 187.80781 * 17 2 1 20 20 C 1.54327 * 102.94571 * 153.57522 * 19 17 2 21 21 N 1.47024 * 107.26774 * 337.80617 * 20 19 17 22 22 C 1.34780 * 125.64847 * 179.20685 * 21 20 19 23 23 O 1.21278 * 120.00386 * 179.69053 * 22 21 20 24 24 C 1.50707 * 119.99690 * 359.68630 * 22 21 20 25 25 C 1.53003 * 109.46952 * 179.97438 * 24 22 21 26 26 C 1.52995 * 109.46741 * 180.02562 * 25 24 22 27 27 C 1.52999 * 117.50059 * 243.61939 * 26 25 24 28 28 C 1.52991 * 60.00327 * 252.51725 * 27 26 25 29 29 C 1.47426 * 108.70449 * 358.94057 * 21 20 19 30 30 H 1.09000 * 109.47508 * 299.99981 * 1 2 3 31 31 H 1.09001 * 109.46976 * 60.00458 * 1 2 3 32 32 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 33 33 H 1.00906 * 111.00403 * 321.04204 * 4 2 1 34 34 H 1.08996 * 109.47341 * 299.99678 * 5 4 2 35 35 H 1.08999 * 109.47519 * 60.00281 * 5 4 2 36 36 H 0.97001 * 120.00279 * 359.97438 * 8 6 5 37 37 H 0.97006 * 119.99858 * 179.97438 * 12 11 9 38 38 H 1.08999 * 110.71965 * 271.93488 * 19 17 2 39 39 H 1.09000 * 110.72417 * 35.03508 * 19 17 2 40 40 H 1.08995 * 109.88184 * 218.39040 * 20 19 17 41 41 H 1.09002 * 109.88385 * 97.22047 * 20 19 17 42 42 H 1.08997 * 109.47117 * 300.00376 * 24 22 21 43 43 H 1.09002 * 109.46743 * 60.00082 * 24 22 21 44 44 H 1.09000 * 109.47351 * 300.00645 * 25 24 22 45 45 H 1.09000 * 109.46511 * 60.00276 * 25 24 22 46 46 H 1.08997 * 115.55496 * 29.34110 * 26 25 24 47 47 H 1.09000 * 117.50012 * 0.02562 * 27 26 25 48 48 H 1.09002 * 117.49897 * 145.01768 * 27 26 25 49 49 H 1.09007 * 117.50045 * 252.50886 * 28 27 26 50 50 H 1.08998 * 117.50109 * 107.49195 * 28 27 26 51 51 H 1.09002 * 110.36518 * 142.96440 * 29 21 20 52 52 H 1.08995 * 110.36673 * 265.17549 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2226 -2.3468 6 6 2.5874 -0.5218 -3.5560 7 8 2.8678 -1.6987 -3.4702 8 7 2.7284 0.1205 -4.7324 9 6 3.1882 -0.5566 -5.8323 10 1 3.4371 -1.6048 -5.7561 11 6 3.3330 0.1054 -7.0453 12 7 3.0297 1.3807 -7.1382 13 14 3.9588 -0.8173 -8.5441 14 1 3.0368 -1.9390 -8.8555 15 1 4.0230 0.1079 -9.7039 16 1 5.3148 -1.3542 -8.2643 17 6 2.0400 -0.7212 1.2492 18 1 1.7468 -1.7711 1.2388 19 6 3.5783 -0.5738 1.3875 20 6 3.8035 -0.7111 2.9080 21 7 2.5331 -0.3787 3.5691 22 6 2.3116 -0.3947 4.8985 23 8 1.2205 -0.0953 5.3352 24 6 3.4200 -0.7846 5.8423 25 6 2.9091 -0.7202 7.2831 26 6 4.0345 -1.1155 8.2413 27 6 3.8361 -2.3788 9.0812 28 6 3.7575 -1.0010 9.7417 29 6 1.5433 -0.0189 2.5375 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4496 -1.4980 -1.4100 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1182 36 1 2.5045 1.0618 -4.8010 37 1 3.1311 1.8430 -7.9849 38 1 4.0920 -1.3697 0.8482 39 1 3.9055 0.4037 1.0332 40 1 4.5816 -0.0198 3.2314 41 1 4.0903 -1.7347 3.1494 42 1 3.7481 -1.7995 5.6178 43 1 4.2574 -0.0972 5.7230 44 1 2.5811 0.2948 7.5073 45 1 2.0715 -1.4074 7.4026 46 1 5.0446 -0.8927 7.8976 47 1 2.9040 -2.9286 8.9509 48 1 4.7158 -2.9877 9.2899 49 1 4.5856 -0.7033 10.3851 50 1 2.7737 -0.6442 10.0461 51 1 0.5557 -0.3881 2.8142 52 1 1.5178 1.0617 2.3968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278991812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:01 Heat of formation + Delta-G solvation = -61.759837 kcal Electronic energy + Delta-G solvation = -28455.017003 eV Core-core repulsion = 24454.406778 eV Total energy + Delta-G solvation = -4000.610226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40180 -38.74477 -38.12518 -37.61951 -35.93314 -33.92534 -32.79507 -31.77485 -31.18949 -30.35672 -28.31764 -26.47470 -25.68880 -24.19562 -23.14575 -22.74186 -21.97367 -20.79571 -20.35897 -19.36035 -19.18486 -17.89798 -17.30160 -16.73426 -16.21691 -15.89171 -15.57031 -15.28381 -15.05375 -14.74664 -14.51472 -14.29066 -13.89775 -13.82550 -13.63056 -13.49301 -13.28339 -12.90883 -12.78437 -12.55973 -12.44926 -12.30276 -12.14305 -11.97052 -11.72460 -11.60302 -11.56455 -11.55341 -11.29780 -11.05034 -10.96546 -10.88510 -10.70750 -10.66633 -10.45298 -10.27598 -10.22327 -10.00194 -9.51059 -8.86173 -8.47583 -8.05593 -7.96671 -6.42742 -3.83696 2.42329 2.73215 3.19157 3.25033 3.29261 3.40030 3.89827 3.98362 4.11977 4.24307 4.37904 4.45088 4.50146 4.54025 4.58705 4.80679 4.82279 4.95234 5.01009 5.08210 5.11945 5.13977 5.19824 5.24675 5.25249 5.25424 5.28478 5.40076 5.44294 5.51835 5.58536 5.64048 5.65456 5.69976 5.73797 5.75398 5.79192 5.86460 5.96583 5.99440 6.03774 6.08404 6.13127 6.23349 6.28856 7.21396 7.29744 7.53840 7.65053 7.94524 8.05052 8.60150 9.16762 9.53312 10.04739 10.74854 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.001563 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.288005 B =17914.773902 C =18423.855225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.095 3.905 3 H 0.079 0.921 4 N -0.661 5.661 5 C 0.052 3.948 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.301 4.301 10 H 0.102 0.898 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.085 4.085 18 H 0.086 0.914 19 C -0.114 4.114 20 C 0.096 3.904 21 N -0.619 5.619 22 C 0.526 3.474 23 O -0.546 6.546 24 C -0.132 4.132 25 C -0.074 4.074 26 C -0.155 4.155 27 C -0.182 4.182 28 C -0.181 4.181 29 C 0.111 3.889 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.350 0.650 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.077 0.923 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -0.772 26.987 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.016 4.016 3 H 0.098 0.902 4 N -0.293 5.293 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.468 6.468 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.105 4.105 18 H 0.104 0.896 19 C -0.152 4.152 20 C -0.027 4.027 21 N -0.354 5.354 22 C 0.315 3.685 23 O -0.423 6.423 24 C -0.172 4.172 25 C -0.111 4.111 26 C -0.173 4.173 27 C -0.219 4.219 28 C -0.218 4.218 29 C -0.012 4.012 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.095 0.905 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.939 -1.200 27.339 27.381 hybrid contribution -0.670 0.347 -1.180 1.400 sum 0.269 -0.853 26.159 26.175 Atomic orbital electron populations 1.22587 0.97311 1.02436 1.02326 1.21479 0.92361 0.97720 0.90053 0.90239 1.60117 1.57647 1.09096 1.02394 1.21686 0.99877 0.95680 0.90870 1.19821 0.85155 0.88235 0.84187 1.90520 1.55352 1.16292 1.84638 1.41861 1.57760 1.12440 1.07964 1.19654 1.40135 0.96420 0.86802 0.87988 1.25252 0.97620 0.95766 0.99228 1.69606 1.48595 1.08841 1.27272 0.85922 0.79449 0.78823 0.80047 1.19929 1.20982 1.19890 1.22290 0.95515 1.00351 0.92345 0.89588 1.22557 0.96062 1.04008 0.92605 1.22188 0.85826 1.00585 0.94054 1.48579 1.13688 1.67794 1.05300 1.20425 0.89651 0.77164 0.81218 1.90702 1.26050 1.49253 1.76330 1.21634 0.97440 1.03687 0.94457 1.20924 0.96301 1.02855 0.91049 1.22351 1.00073 1.02450 0.92421 1.23055 1.03282 0.90862 1.04657 1.22962 1.03135 1.00591 0.95100 1.22279 0.92819 0.99524 0.86606 0.92043 0.92319 0.92216 0.82984 0.93891 0.89704 0.77483 0.91828 0.88944 0.90484 0.91416 0.91296 0.88784 0.88901 0.90826 0.91042 0.87701 0.88734 0.88901 0.88857 0.88733 0.90508 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 8.94 37.16 0.33 -1.56 16 2 C 0.09 1.04 2.12 -67.72 -0.14 0.90 16 3 H 0.08 0.86 7.74 -51.93 -0.40 0.45 16 4 N -0.66 -9.66 5.73 -108.00 -0.62 -10.28 16 5 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 6 C 0.44 10.08 7.82 -10.98 -0.09 10.00 16 7 O -0.58 -15.43 15.78 5.55 0.09 -15.34 16 8 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 9 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 10 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 13 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C -0.09 -0.85 2.79 -88.47 -0.25 -1.09 16 18 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.11 -1.07 6.28 -24.90 -0.16 -1.23 16 20 C 0.10 0.75 6.49 -3.06 -0.02 0.74 16 21 N -0.62 -6.13 3.33 -170.51 -0.57 -6.69 16 22 C 0.53 5.73 7.85 -10.98 -0.09 5.65 16 23 O -0.55 -7.97 16.24 5.56 0.09 -7.88 16 24 C -0.13 -0.97 4.85 -27.88 -0.14 -1.10 16 25 C -0.07 -0.57 4.78 -26.73 -0.13 -0.70 16 26 C -0.15 -0.97 5.74 -90.62 -0.52 -1.49 16 27 C -0.18 -1.09 10.18 -26.74 -0.27 -1.36 16 28 C -0.18 -1.09 10.25 -26.73 -0.27 -1.36 16 29 C 0.11 1.11 5.27 -2.53 -0.01 1.10 16 30 H 0.06 0.55 7.23 -51.93 -0.38 0.18 16 31 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 32 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.35 5.46 8.17 -39.29 -0.32 5.14 16 34 H 0.04 0.65 7.44 -51.93 -0.39 0.27 16 35 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 36 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.74 7.99 -51.93 -0.41 0.32 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.07 0.63 7.83 -51.93 -0.41 0.23 16 46 H 0.10 0.57 8.07 -51.93 -0.42 0.15 16 47 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 48 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 50 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 52 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 LS Contribution 421.65 15.07 6.35 6.35 Total: -1.00 -32.27 421.65 -10.29 -42.56 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -9.26 Total: 11.70 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.02 Total: 1.39 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.52 Total: -54.60 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.18 Total: -23.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.27 -10.29 -42.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278991812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.203 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds