Wall clock time and date at job start Tue Mar 31 2020 20:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46943 * 2 1 4 4 N 1.46895 * 109.47253 * 240.00072 * 2 1 3 5 5 C 1.46895 * 111.00085 * 85.00098 * 4 2 1 6 6 C 1.50708 * 109.47178 * 180.02562 * 5 4 2 7 7 O 1.21288 * 119.99812 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99917 * 180.02562 * 6 5 4 9 9 C 1.37103 * 120.00015 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99700 * 0.02562 * 9 8 6 11 11 C 1.38945 * 120.00252 * 179.97438 * 9 8 6 12 12 N 1.31413 * 119.99769 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00316 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46918 * 60.00062 * 13 11 9 15 15 H 1.48500 * 109.47400 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47107 * 300.00188 * 13 11 9 17 17 C 1.52996 * 109.47074 * 119.99986 * 2 1 3 18 18 H 1.09005 * 110.88969 * 63.87906 * 17 2 1 19 19 C 1.55155 * 111.00532 * 187.80781 * 17 2 1 20 20 C 1.54327 * 102.94571 * 153.57522 * 19 17 2 21 21 N 1.47024 * 107.26774 * 337.80617 * 20 19 17 22 22 C 1.34780 * 125.64847 * 179.20685 * 21 20 19 23 23 O 1.21278 * 120.00386 * 179.69053 * 22 21 20 24 24 C 1.50707 * 119.99690 * 359.68630 * 22 21 20 25 25 C 1.53003 * 109.46952 * 179.97438 * 24 22 21 26 26 C 1.52995 * 109.46741 * 180.02562 * 25 24 22 27 27 C 1.52999 * 117.50059 * 243.61939 * 26 25 24 28 28 C 1.52991 * 60.00327 * 252.51725 * 27 26 25 29 29 C 1.47426 * 108.70449 * 358.94057 * 21 20 19 30 30 H 1.09000 * 109.47508 * 299.99981 * 1 2 3 31 31 H 1.09001 * 109.46976 * 60.00458 * 1 2 3 32 32 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 33 33 H 1.00906 * 111.00403 * 321.04204 * 4 2 1 34 34 H 1.08996 * 109.47341 * 299.99678 * 5 4 2 35 35 H 1.08999 * 109.47519 * 60.00281 * 5 4 2 36 36 H 0.97001 * 120.00279 * 359.97438 * 8 6 5 37 37 H 0.97006 * 119.99858 * 179.97438 * 12 11 9 38 38 H 1.08999 * 110.71965 * 271.93488 * 19 17 2 39 39 H 1.09000 * 110.72417 * 35.03508 * 19 17 2 40 40 H 1.08995 * 109.88184 * 218.39040 * 20 19 17 41 41 H 1.09002 * 109.88385 * 97.22047 * 20 19 17 42 42 H 1.08997 * 109.47117 * 300.00376 * 24 22 21 43 43 H 1.09002 * 109.46743 * 60.00082 * 24 22 21 44 44 H 1.09000 * 109.47351 * 300.00645 * 25 24 22 45 45 H 1.09000 * 109.46511 * 60.00276 * 25 24 22 46 46 H 1.08997 * 115.55496 * 29.34110 * 26 25 24 47 47 H 1.09000 * 117.50012 * 0.02562 * 27 26 25 48 48 H 1.09002 * 117.49897 * 145.01768 * 27 26 25 49 49 H 1.09007 * 117.50045 * 252.50886 * 28 27 26 50 50 H 1.08998 * 117.50109 * 107.49195 * 28 27 26 51 51 H 1.09002 * 110.36518 * 142.96440 * 29 21 20 52 52 H 1.08995 * 110.36673 * 265.17549 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2226 -2.3468 6 6 2.5874 -0.5218 -3.5560 7 8 2.8678 -1.6987 -3.4702 8 7 2.7284 0.1205 -4.7324 9 6 3.1882 -0.5566 -5.8323 10 1 3.4371 -1.6048 -5.7561 11 6 3.3330 0.1054 -7.0453 12 7 3.0297 1.3807 -7.1382 13 14 3.9588 -0.8173 -8.5441 14 1 3.0368 -1.9390 -8.8555 15 1 4.0230 0.1079 -9.7039 16 1 5.3148 -1.3542 -8.2643 17 6 2.0400 -0.7212 1.2492 18 1 1.7468 -1.7711 1.2388 19 6 3.5783 -0.5738 1.3875 20 6 3.8035 -0.7111 2.9080 21 7 2.5331 -0.3787 3.5691 22 6 2.3116 -0.3947 4.8985 23 8 1.2205 -0.0953 5.3352 24 6 3.4200 -0.7846 5.8423 25 6 2.9091 -0.7202 7.2831 26 6 4.0345 -1.1155 8.2413 27 6 3.8361 -2.3788 9.0812 28 6 3.7575 -1.0010 9.7417 29 6 1.5433 -0.0189 2.5375 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4496 -1.4980 -1.4100 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1182 36 1 2.5045 1.0618 -4.8010 37 1 3.1311 1.8430 -7.9849 38 1 4.0920 -1.3697 0.8482 39 1 3.9055 0.4037 1.0332 40 1 4.5816 -0.0198 3.2314 41 1 4.0903 -1.7347 3.1494 42 1 3.7481 -1.7995 5.6178 43 1 4.2574 -0.0972 5.7230 44 1 2.5811 0.2948 7.5073 45 1 2.0715 -1.4074 7.4026 46 1 5.0446 -0.8927 7.8976 47 1 2.9040 -2.9286 8.9509 48 1 4.7158 -2.9877 9.2899 49 1 4.5856 -0.7033 10.3851 50 1 2.7737 -0.6442 10.0461 51 1 0.5557 -0.3881 2.8142 52 1 1.5178 1.0617 2.3968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278991812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:00 Heat of formation + Delta-G solvation = -82.569530 kcal Electronic energy + Delta-G solvation = -28455.919379 eV Core-core repulsion = 24454.406778 eV Total energy + Delta-G solvation = -4001.512602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21777 -40.18865 -39.23071 -38.28876 -37.02307 -35.87748 -33.60156 -33.24078 -32.59471 -31.22170 -29.20625 -27.90735 -26.56696 -25.71255 -23.99120 -23.19671 -22.82983 -21.42035 -21.29370 -20.82860 -20.10434 -19.86696 -18.09764 -17.87984 -17.20107 -16.91812 -16.68283 -16.35390 -16.16975 -16.04189 -15.78266 -15.45059 -15.04656 -14.85478 -14.56528 -14.49696 -14.33004 -13.94526 -13.68514 -13.62825 -13.46424 -13.38482 -13.19027 -13.03325 -12.97450 -12.73888 -12.45416 -12.41405 -12.25927 -12.18835 -12.12348 -12.11277 -11.80621 -11.70850 -11.50235 -11.47359 -11.22720 -10.86767 -10.74623 -10.30988 -9.99203 -9.65482 -9.25303 -8.44692 -5.93293 1.41137 1.43110 1.53715 1.61441 1.98251 2.08688 2.30653 2.90410 2.92519 3.22974 3.39621 3.56518 3.68738 3.77432 3.81261 3.97705 4.05221 4.10028 4.23731 4.27773 4.32049 4.36545 4.40034 4.41111 4.43665 4.50034 4.55978 4.59661 4.64135 4.68817 4.78859 4.81771 4.82993 4.89123 5.01578 5.04908 5.05330 5.07432 5.14002 5.23058 5.25254 5.28828 5.34889 5.42559 5.44240 5.45844 5.93613 6.15382 6.43955 6.53111 6.62545 7.13624 7.14889 7.59284 8.14554 8.72352 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.001563 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.288005 B =17914.773902 C =18423.855225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.088 0.912 4 N -0.669 5.669 5 C 0.067 3.933 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.574 5.574 9 C -0.335 4.335 10 H 0.079 0.921 11 C -0.012 4.012 12 N -0.920 5.920 13 Si 0.991 3.009 14 H -0.272 1.272 15 H -0.271 1.271 16 H -0.272 1.272 17 C -0.078 4.078 18 H 0.078 0.922 19 C -0.113 4.113 20 C 0.099 3.901 21 N -0.620 5.620 22 C 0.519 3.481 23 O -0.592 6.592 24 C -0.124 4.124 25 C -0.070 4.070 26 C -0.154 4.154 27 C -0.183 4.183 28 C -0.186 4.186 29 C 0.113 3.887 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.343 0.657 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.121 0.879 47 H 0.088 0.912 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.064 0.936 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -0.392 27.600 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.107 0.893 4 N -0.300 5.300 5 C -0.065 4.065 6 C 0.226 3.774 7 O -0.509 6.509 8 N -0.212 5.212 9 C -0.464 4.464 10 H 0.097 0.903 11 C -0.212 4.212 12 N -0.561 5.561 13 Si 0.815 3.185 14 H -0.198 1.198 15 H -0.196 1.196 16 H -0.197 1.197 17 C -0.098 4.098 18 H 0.097 0.903 19 C -0.151 4.151 20 C -0.023 4.023 21 N -0.353 5.353 22 C 0.310 3.690 23 O -0.473 6.473 24 C -0.163 4.163 25 C -0.108 4.108 26 C -0.172 4.172 27 C -0.220 4.220 28 C -0.223 4.223 29 C -0.010 4.010 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.138 0.862 47 H 0.107 0.893 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.106 0.894 51 H 0.083 0.917 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.185 -0.800 27.958 28.055 hybrid contribution -1.089 0.218 -1.321 1.726 sum 1.096 -0.583 26.637 26.666 Atomic orbital electron populations 1.22532 0.96529 1.02452 1.02713 1.21517 0.92961 0.97853 0.88754 0.89338 1.60116 1.58335 1.08927 1.02642 1.21536 1.00913 0.95387 0.88701 1.20908 0.83316 0.88008 0.85137 1.90490 1.56602 1.18316 1.85466 1.41935 1.58389 1.12587 1.08239 1.19634 1.42222 0.95969 0.88588 0.90301 1.26005 0.97241 0.96586 1.01323 1.69667 1.48647 1.09668 1.28145 0.85013 0.78740 0.77824 0.76910 1.19772 1.19593 1.19705 1.22164 0.96140 0.99723 0.91757 0.90332 1.22520 0.95190 1.03625 0.93749 1.22291 0.85249 1.02107 0.92654 1.48685 1.14341 1.67131 1.05170 1.21087 0.89858 0.76356 0.81708 1.90681 1.28066 1.51453 1.77102 1.21656 0.96581 1.05161 0.92893 1.20837 0.96418 1.01493 0.92044 1.22342 1.00081 1.02660 0.92128 1.23110 1.03534 0.90895 1.04429 1.23033 1.03287 1.00709 0.95227 1.22204 0.92519 0.99643 0.86666 0.90826 0.92693 0.92451 0.83762 0.91924 0.87749 0.77028 0.91361 0.89951 0.90431 0.89279 0.89828 0.86981 0.86568 0.92354 0.92842 0.86152 0.89320 0.87755 0.87743 0.89390 0.91717 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 8.94 71.98 0.64 -2.82 16 2 C 0.10 2.03 2.12 44.91 0.10 2.12 16 3 H 0.09 1.69 7.74 -2.39 -0.02 1.67 16 4 N -0.67 -18.88 5.73 -495.60 -2.84 -21.72 16 5 C 0.07 2.14 5.97 85.56 0.51 2.65 16 6 C 0.44 20.15 7.82 87.66 0.69 20.83 16 7 O -0.62 -33.46 15.78 -3.06 -0.05 -33.50 16 8 N -0.57 -28.84 5.29 -306.98 -1.62 -30.46 16 9 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 10 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 11 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 12 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 13 Si 0.99 42.43 29.55 68.60 2.03 44.46 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 C -0.08 -1.45 2.79 -9.40 -0.03 -1.48 16 18 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 19 C -0.11 -1.91 6.28 31.78 0.20 -1.71 16 20 C 0.10 1.29 6.49 86.73 0.56 1.86 16 21 N -0.62 -11.29 3.33 -811.77 -2.70 -13.99 16 22 C 0.52 10.80 7.85 87.66 0.69 11.49 16 23 O -0.59 -17.50 16.24 -3.02 -0.05 -17.55 16 24 C -0.12 -1.56 4.85 29.85 0.14 -1.42 16 25 C -0.07 -1.04 4.78 30.59 0.15 -0.89 16 26 C -0.15 -1.68 5.74 -10.79 -0.06 -1.74 16 27 C -0.18 -1.95 10.18 30.59 0.31 -1.63 16 28 C -0.19 -2.02 10.25 30.59 0.31 -1.71 16 29 C 0.11 2.15 5.27 86.86 0.46 2.60 16 30 H 0.07 1.22 7.23 -2.39 -0.02 1.20 16 31 H 0.05 1.08 7.45 -2.39 -0.02 1.07 16 32 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.34 10.58 8.17 -89.69 -0.73 9.85 16 34 H 0.06 1.79 7.44 -2.39 -0.02 1.77 16 35 H 0.10 2.97 8.06 -2.39 -0.02 2.95 16 36 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 37 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.08 1.31 7.99 -2.39 -0.02 1.30 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 45 H 0.05 0.97 7.83 -2.39 -0.02 0.95 16 46 H 0.12 0.96 8.07 -2.39 -0.02 0.94 16 47 H 0.09 1.04 8.03 -2.39 -0.02 1.02 16 48 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.06 1.40 7.95 -2.39 -0.02 1.38 16 52 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 Total: -1.00 -70.80 421.65 0.45 -70.35 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.55 Total: 41.18 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.95 Total: 10.07 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -6.88 Total: -115.00 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.10 Total: -51.06 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -70.80 0.45 -70.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278991812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.221 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds