Wall clock time and date at job start Tue Mar 31 2020 20:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46743 * 2 1 4 4 N 1.46901 * 109.47159 * 120.00381 * 2 1 3 5 5 C 1.46899 * 110.99718 * 275.00074 * 4 2 1 6 6 C 1.50697 * 109.47145 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99773 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00266 * 180.02562 * 6 5 4 9 9 C 1.37101 * 120.00133 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00028 * 359.97438 * 9 8 6 11 11 C 1.38955 * 120.00013 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00023 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99865 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47199 * 90.00052 * 13 11 9 15 15 H 1.48499 * 109.47095 * 209.99954 * 13 11 9 16 16 H 1.48495 * 109.47165 * 330.00005 * 13 11 9 17 17 C 1.53002 * 109.47075 * 240.00403 * 2 1 3 18 18 H 1.09000 * 110.88950 * 296.11668 * 17 2 1 19 19 C 1.55160 * 111.00107 * 172.19560 * 17 2 1 20 20 C 1.54323 * 102.94127 * 206.42505 * 19 17 2 21 21 N 1.47192 * 107.29513 * 22.28167 * 20 19 17 22 22 C 1.34775 * 125.73680 * 181.03325 * 21 20 19 23 23 O 1.21281 * 119.99856 * 179.86042 * 22 21 20 24 24 C 1.50701 * 119.99726 * 359.86049 * 22 21 20 25 25 C 1.53003 * 109.46543 * 180.02562 * 24 22 21 26 26 C 1.53010 * 109.46920 * 179.97438 * 25 24 22 27 27 C 1.52998 * 117.49808 * 243.74578 * 26 25 24 28 28 C 1.52997 * 117.49720 * 175.08414 * 26 25 24 29 29 C 1.47425 * 108.61291 * 0.91225 * 21 20 19 30 30 H 1.09003 * 109.47429 * 59.99918 * 1 2 3 31 31 H 1.09007 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47463 * 299.99559 * 1 2 3 33 33 H 1.00898 * 110.99974 * 38.95405 * 4 2 1 34 34 H 1.09000 * 109.47462 * 300.00172 * 5 4 2 35 35 H 1.08995 * 109.47533 * 60.00372 * 5 4 2 36 36 H 0.96997 * 120.00489 * 359.97438 * 8 6 5 37 37 H 0.96997 * 119.99937 * 180.02562 * 12 11 9 38 38 H 1.09004 * 110.71965 * 324.78457 * 19 17 2 39 39 H 1.09001 * 110.72402 * 88.06163 * 19 17 2 40 40 H 1.08999 * 109.88854 * 141.60703 * 20 19 17 41 41 H 1.09001 * 109.88086 * 262.62061 * 20 19 17 42 42 H 1.09002 * 109.47259 * 299.99929 * 24 22 21 43 43 H 1.08992 * 109.47562 * 60.00154 * 24 22 21 44 44 H 1.09000 * 109.47654 * 299.99667 * 25 24 22 45 45 H 1.09004 * 109.47503 * 60.00003 * 25 24 22 46 46 H 1.09001 * 115.54486 * 29.42155 * 26 25 24 47 47 H 1.09002 * 117.49992 * 0.02562 * 27 26 25 48 48 H 1.08998 * 117.49696 * 145.02218 * 27 26 25 49 49 H 1.08999 * 117.49958 * 214.97750 * 28 26 25 50 50 H 1.08999 * 117.50335 * 0.02562 * 28 26 25 51 51 H 1.09002 * 110.36696 * 217.11260 * 29 21 20 52 52 H 1.08995 * 110.36608 * 94.90096 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5885 -0.5216 3.5557 7 8 2.8697 -1.6983 3.4696 8 7 2.7286 0.1204 4.7323 9 6 3.1895 -0.5565 5.8319 10 1 3.4399 -1.6043 5.7553 11 6 3.3344 0.1056 7.0450 12 7 3.0303 1.3806 7.1381 13 14 3.9617 -0.8169 8.5433 14 1 5.4427 -0.7226 8.5984 15 1 3.3816 -0.2179 9.7721 16 1 3.5596 -2.2433 8.4506 17 6 2.0400 -0.7212 -1.2493 18 1 1.7469 -1.7710 -1.2389 19 6 3.5784 -0.5738 -1.3874 20 6 3.8036 -0.7109 -2.9079 21 7 2.5326 -0.3761 -3.5705 22 6 2.3087 -0.3953 -4.8994 23 8 1.2154 -0.1012 -5.3344 24 6 3.4168 -0.7820 -5.8447 25 6 2.9029 -0.7222 -7.2846 26 6 4.0281 -1.1143 -8.2444 27 6 4.5206 -0.0505 -9.2277 28 6 3.6815 -1.2281 -9.7303 29 6 1.5433 -0.0187 -2.5376 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.4496 -1.4980 1.4099 34 1 2.7587 1.0461 2.1183 35 1 1.0871 0.6161 2.5526 36 1 2.5041 1.0615 4.8012 37 1 3.1318 1.8428 7.9848 38 1 3.9051 0.4049 -1.0359 39 1 4.0921 -1.3697 -0.8481 40 1 4.5817 -0.0196 -3.2314 41 1 4.0931 -1.7338 -3.1490 42 1 4.2516 -0.0908 -5.7282 43 1 3.7498 -1.7950 -5.6192 44 1 2.0680 -1.4131 -7.4014 45 1 2.5702 0.2911 -7.5099 46 1 4.7655 -1.8104 -7.8448 47 1 4.0433 0.9287 -9.1905 48 1 5.5820 -0.0471 -9.4753 49 1 4.1914 -1.9987 -10.3084 50 1 2.6521 -1.0233 -10.0241 51 1 0.5557 -0.3879 -2.8142 52 1 1.5174 1.0615 -2.3947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278991814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:07 Heat of formation + Delta-G solvation = -61.769045 kcal Electronic energy + Delta-G solvation = -28450.499083 eV Core-core repulsion = 24449.888458 eV Total energy + Delta-G solvation = -4000.610625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.39388 -38.74434 -38.12353 -37.61733 -35.92830 -33.92623 -32.79290 -31.77374 -31.19090 -30.35984 -28.31409 -26.47624 -25.68918 -24.19673 -23.14720 -22.74692 -21.97094 -20.79598 -20.35699 -19.36113 -19.18622 -17.89930 -17.29342 -16.78131 -16.09978 -15.89990 -15.65776 -15.27895 -15.10255 -14.68930 -14.53541 -14.18135 -13.95966 -13.84053 -13.61268 -13.55001 -13.27419 -12.85285 -12.76872 -12.63192 -12.42758 -12.29946 -12.14697 -11.97349 -11.72603 -11.59655 -11.56931 -11.55601 -11.29619 -11.06952 -10.96858 -10.88663 -10.70864 -10.66447 -10.40625 -10.27972 -10.22929 -10.00211 -9.52074 -8.86290 -8.47641 -8.05724 -7.96782 -6.42996 -3.83834 2.42351 2.72906 3.16851 3.25629 3.31306 3.39789 3.89707 3.98070 4.11857 4.24335 4.37546 4.45092 4.49621 4.54296 4.59188 4.76643 4.86864 4.93882 5.00494 5.08029 5.12093 5.14598 5.19846 5.24736 5.25209 5.25281 5.27817 5.40103 5.44378 5.51629 5.58387 5.64043 5.65292 5.70122 5.73865 5.75272 5.78937 5.86315 5.96546 5.99316 6.03591 6.08244 6.12996 6.23171 6.28787 7.21288 7.29689 7.53930 7.65008 7.94515 8.05169 8.60000 9.16749 9.53263 10.04615 10.74715 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030222 B = 0.001560 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.261873 B =17946.178181 C =18438.847684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.095 3.905 3 H 0.079 0.921 4 N -0.661 5.661 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.085 4.085 18 H 0.086 0.914 19 C -0.114 4.114 20 C 0.096 3.904 21 N -0.619 5.619 22 C 0.526 3.474 23 O -0.546 6.546 24 C -0.132 4.132 25 C -0.074 4.074 26 C -0.155 4.155 27 C -0.182 4.182 28 C -0.181 4.181 29 C 0.110 3.890 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.350 0.650 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.077 0.923 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 -0.380 -27.031 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.016 4.016 3 H 0.098 0.902 4 N -0.292 5.292 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.468 6.468 8 N -0.201 5.201 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.105 4.105 18 H 0.104 0.896 19 C -0.152 4.152 20 C -0.027 4.027 21 N -0.354 5.354 22 C 0.316 3.684 23 O -0.423 6.423 24 C -0.172 4.172 25 C -0.111 4.111 26 C -0.173 4.173 27 C -0.219 4.219 28 C -0.218 4.218 29 C -0.012 4.012 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.123 0.877 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.095 0.905 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.043 -0.813 -27.385 27.417 hybrid contribution -0.658 0.369 1.180 1.400 sum 0.385 -0.445 -26.206 26.213 Atomic orbital electron populations 1.22587 0.97309 1.02438 1.02327 1.21481 0.92361 0.97719 0.90052 0.90238 1.60120 1.57642 1.09093 1.02391 1.21685 0.99876 0.95684 0.90874 1.19820 0.85145 0.88237 0.84180 1.90522 1.55334 1.16297 1.84633 1.41867 1.57747 1.12475 1.07967 1.19704 1.39977 0.96471 0.86794 0.87933 1.25255 0.97633 0.95771 0.99236 1.69608 1.48615 1.08875 1.27206 0.85862 0.78819 0.79485 0.80150 1.20395 1.20948 1.19435 1.22292 0.95514 1.00353 0.92350 0.89590 1.22560 0.96068 1.03986 0.92598 1.22216 0.85815 1.00587 0.94044 1.48612 1.13692 1.67776 1.05294 1.20419 0.89658 0.77144 0.81217 1.90704 1.25889 1.49352 1.76398 1.21631 0.97496 1.03664 0.94423 1.20928 0.96397 1.02730 0.91078 1.22355 1.01108 1.02604 0.91214 1.23067 1.00073 0.94477 1.04265 1.22973 1.01133 1.01119 0.96554 1.22273 0.92832 0.99544 0.86597 0.92049 0.92213 0.92314 0.82986 0.89706 0.93880 0.77487 0.91880 0.90489 0.88919 0.91417 0.91295 0.88833 0.88854 0.90803 0.91062 0.87695 0.88745 0.88909 0.88848 0.88727 0.90506 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 8.94 37.16 0.33 -1.56 16 2 C 0.09 1.04 2.12 -67.71 -0.14 0.90 16 3 H 0.08 0.85 7.74 -51.93 -0.40 0.45 16 4 N -0.66 -9.66 5.73 -107.99 -0.62 -10.27 16 5 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 6 C 0.44 10.08 7.82 -10.99 -0.09 10.00 16 7 O -0.58 -15.42 15.78 5.55 0.09 -15.33 16 8 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 9 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 10 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 13 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.09 -0.85 2.79 -88.47 -0.25 -1.09 16 18 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.11 -1.07 6.28 -24.89 -0.16 -1.22 16 20 C 0.10 0.75 6.50 -2.97 -0.02 0.73 16 21 N -0.62 -6.13 3.33 -170.39 -0.57 -6.70 16 22 C 0.53 5.74 7.85 -10.99 -0.09 5.65 16 23 O -0.55 -7.98 16.24 5.56 0.09 -7.89 16 24 C -0.13 -0.97 4.86 -27.88 -0.14 -1.10 16 25 C -0.07 -0.57 4.79 -26.72 -0.13 -0.70 16 26 C -0.15 -0.97 5.73 -90.62 -0.52 -1.49 16 27 C -0.18 -1.08 10.18 -26.69 -0.27 -1.35 16 28 C -0.18 -1.09 10.25 -26.69 -0.27 -1.36 16 29 C 0.11 1.11 5.27 -2.53 -0.01 1.10 16 30 H 0.06 0.55 7.23 -51.93 -0.38 0.18 16 31 H 0.06 0.60 8.13 -51.92 -0.42 0.18 16 32 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 33 H 0.35 5.45 8.17 -39.29 -0.32 5.13 16 34 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 35 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 36 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.08 0.74 7.99 -51.93 -0.42 0.32 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.07 0.63 7.83 -51.93 -0.41 0.22 16 46 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 47 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 52 H 0.07 0.67 8.03 -51.93 -0.42 0.25 16 LS Contribution 421.67 15.07 6.35 6.35 Total: -1.00 -32.30 421.67 -10.29 -42.59 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -9.26 Total: 11.65 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.02 Total: 1.41 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.52 Total: -54.60 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.18 Total: -23.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.30 -10.29 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278991814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.184 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds