Wall clock time and date at job start Tue Mar 31 2020 20:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46743 * 2 1 4 4 N 1.46901 * 109.47159 * 120.00381 * 2 1 3 5 5 C 1.46899 * 110.99718 * 275.00074 * 4 2 1 6 6 C 1.50697 * 109.47145 * 180.02562 * 5 4 2 7 7 O 1.21292 * 119.99773 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00266 * 180.02562 * 6 5 4 9 9 C 1.37101 * 120.00133 * 180.02562 * 8 6 5 10 10 H 1.08001 * 120.00028 * 359.97438 * 9 8 6 11 11 C 1.38955 * 120.00013 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00023 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99865 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47199 * 90.00052 * 13 11 9 15 15 H 1.48499 * 109.47095 * 209.99954 * 13 11 9 16 16 H 1.48495 * 109.47165 * 330.00005 * 13 11 9 17 17 C 1.53002 * 109.47075 * 240.00403 * 2 1 3 18 18 H 1.09000 * 110.88950 * 296.11668 * 17 2 1 19 19 C 1.55160 * 111.00107 * 172.19560 * 17 2 1 20 20 C 1.54323 * 102.94127 * 206.42505 * 19 17 2 21 21 N 1.47192 * 107.29513 * 22.28167 * 20 19 17 22 22 C 1.34775 * 125.73680 * 181.03325 * 21 20 19 23 23 O 1.21281 * 119.99856 * 179.86042 * 22 21 20 24 24 C 1.50701 * 119.99726 * 359.86049 * 22 21 20 25 25 C 1.53003 * 109.46543 * 180.02562 * 24 22 21 26 26 C 1.53010 * 109.46920 * 179.97438 * 25 24 22 27 27 C 1.52998 * 117.49808 * 243.74578 * 26 25 24 28 28 C 1.52997 * 117.49720 * 175.08414 * 26 25 24 29 29 C 1.47425 * 108.61291 * 0.91225 * 21 20 19 30 30 H 1.09003 * 109.47429 * 59.99918 * 1 2 3 31 31 H 1.09007 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47463 * 299.99559 * 1 2 3 33 33 H 1.00898 * 110.99974 * 38.95405 * 4 2 1 34 34 H 1.09000 * 109.47462 * 300.00172 * 5 4 2 35 35 H 1.08995 * 109.47533 * 60.00372 * 5 4 2 36 36 H 0.96997 * 120.00489 * 359.97438 * 8 6 5 37 37 H 0.96997 * 119.99937 * 180.02562 * 12 11 9 38 38 H 1.09004 * 110.71965 * 324.78457 * 19 17 2 39 39 H 1.09001 * 110.72402 * 88.06163 * 19 17 2 40 40 H 1.08999 * 109.88854 * 141.60703 * 20 19 17 41 41 H 1.09001 * 109.88086 * 262.62061 * 20 19 17 42 42 H 1.09002 * 109.47259 * 299.99929 * 24 22 21 43 43 H 1.08992 * 109.47562 * 60.00154 * 24 22 21 44 44 H 1.09000 * 109.47654 * 299.99667 * 25 24 22 45 45 H 1.09004 * 109.47503 * 60.00003 * 25 24 22 46 46 H 1.09001 * 115.54486 * 29.42155 * 26 25 24 47 47 H 1.09002 * 117.49992 * 0.02562 * 27 26 25 48 48 H 1.08998 * 117.49696 * 145.02218 * 27 26 25 49 49 H 1.08999 * 117.49958 * 214.97750 * 28 26 25 50 50 H 1.08999 * 117.50335 * 0.02562 * 28 26 25 51 51 H 1.09002 * 110.36696 * 217.11260 * 29 21 20 52 52 H 1.08995 * 110.36608 * 94.90096 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5885 -0.5216 3.5557 7 8 2.8697 -1.6983 3.4696 8 7 2.7286 0.1204 4.7323 9 6 3.1895 -0.5565 5.8319 10 1 3.4399 -1.6043 5.7553 11 6 3.3344 0.1056 7.0450 12 7 3.0303 1.3806 7.1381 13 14 3.9617 -0.8169 8.5433 14 1 5.4427 -0.7226 8.5984 15 1 3.3816 -0.2179 9.7721 16 1 3.5596 -2.2433 8.4506 17 6 2.0400 -0.7212 -1.2493 18 1 1.7469 -1.7710 -1.2389 19 6 3.5784 -0.5738 -1.3874 20 6 3.8036 -0.7109 -2.9079 21 7 2.5326 -0.3761 -3.5705 22 6 2.3087 -0.3953 -4.8994 23 8 1.2154 -0.1012 -5.3344 24 6 3.4168 -0.7820 -5.8447 25 6 2.9029 -0.7222 -7.2846 26 6 4.0281 -1.1143 -8.2444 27 6 4.5206 -0.0505 -9.2277 28 6 3.6815 -1.2281 -9.7303 29 6 1.5433 -0.0187 -2.5376 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.4496 -1.4980 1.4099 34 1 2.7587 1.0461 2.1183 35 1 1.0871 0.6161 2.5526 36 1 2.5041 1.0615 4.8012 37 1 3.1318 1.8428 7.9848 38 1 3.9051 0.4049 -1.0359 39 1 4.0921 -1.3697 -0.8481 40 1 4.5817 -0.0196 -3.2314 41 1 4.0931 -1.7338 -3.1490 42 1 4.2516 -0.0908 -5.7282 43 1 3.7498 -1.7950 -5.6192 44 1 2.0680 -1.4131 -7.4014 45 1 2.5702 0.2911 -7.5099 46 1 4.7655 -1.8104 -7.8448 47 1 4.0433 0.9287 -9.1905 48 1 5.5820 -0.0471 -9.4753 49 1 4.1914 -1.9987 -10.3084 50 1 2.6521 -1.0233 -10.0241 51 1 0.5557 -0.3879 -2.8142 52 1 1.5174 1.0615 -2.3947 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278991814.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:06 Heat of formation + Delta-G solvation = -82.608967 kcal Electronic energy + Delta-G solvation = -28451.402770 eV Core-core repulsion = 24449.888458 eV Total energy + Delta-G solvation = -4001.514312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21008 -40.18923 -39.22858 -38.28426 -37.01782 -35.87825 -33.59892 -33.24202 -32.59305 -31.22462 -29.20253 -27.90867 -26.56721 -25.71344 -23.99145 -23.19919 -22.82642 -21.42255 -21.29008 -20.82785 -20.10538 -19.86880 -18.09474 -17.87865 -17.25891 -16.84584 -16.61670 -16.35622 -16.29314 -16.04011 -15.77935 -15.40762 -15.08115 -14.75334 -14.57831 -14.50871 -14.39127 -13.96501 -13.65041 -13.59338 -13.46286 -13.42115 -13.19833 -13.03088 -12.97515 -12.74247 -12.45469 -12.40054 -12.26246 -12.17432 -12.12809 -12.11038 -11.80736 -11.70867 -11.50394 -11.47844 -11.22406 -10.86922 -10.74667 -10.31038 -9.99211 -9.65623 -9.25329 -8.45000 -5.93456 1.39256 1.43136 1.55497 1.61443 1.97956 2.08522 2.30541 2.90293 2.92490 3.22778 3.39435 3.56543 3.68615 3.76905 3.81943 3.97905 4.04732 4.10100 4.24411 4.26764 4.32635 4.36372 4.39870 4.41310 4.43437 4.50005 4.56225 4.59974 4.64169 4.68424 4.78878 4.81867 4.83018 4.89110 5.01268 5.04114 5.07138 5.07717 5.12873 5.23100 5.25323 5.28955 5.34725 5.42711 5.44234 5.45642 5.93610 6.15370 6.44021 6.53044 6.62413 7.13587 7.14902 7.59232 8.14479 8.72330 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030222 B = 0.001560 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.261873 B =17946.178181 C =18438.847684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.088 0.912 4 N -0.669 5.669 5 C 0.067 3.933 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.574 5.574 9 C -0.334 4.334 10 H 0.079 0.921 11 C -0.012 4.012 12 N -0.921 5.921 13 Si 0.991 3.009 14 H -0.271 1.271 15 H -0.272 1.272 16 H -0.273 1.273 17 C -0.078 4.078 18 H 0.079 0.921 19 C -0.113 4.113 20 C 0.099 3.901 21 N -0.620 5.620 22 C 0.519 3.481 23 O -0.592 6.592 24 C -0.124 4.124 25 C -0.070 4.070 26 C -0.154 4.154 27 C -0.181 4.181 28 C -0.186 4.186 29 C 0.113 3.887 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.344 0.656 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.120 0.880 47 H 0.089 0.911 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.064 0.936 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 -0.079 -27.633 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.106 0.894 4 N -0.300 5.300 5 C -0.065 4.065 6 C 0.227 3.773 7 O -0.509 6.509 8 N -0.212 5.212 9 C -0.463 4.463 10 H 0.097 0.903 11 C -0.212 4.212 12 N -0.562 5.562 13 Si 0.815 3.185 14 H -0.197 1.197 15 H -0.197 1.197 16 H -0.198 1.198 17 C -0.098 4.098 18 H 0.097 0.903 19 C -0.151 4.151 20 C -0.023 4.023 21 N -0.353 5.353 22 C 0.310 3.690 23 O -0.473 6.473 24 C -0.163 4.163 25 C -0.108 4.108 26 C -0.172 4.172 27 C -0.218 4.218 28 C -0.223 4.223 29 C -0.011 4.011 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.162 0.838 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.138 0.862 47 H 0.108 0.892 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.106 0.894 51 H 0.083 0.917 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.273 -0.489 -27.993 28.089 hybrid contribution -1.069 0.270 1.319 1.719 sum 1.204 -0.219 -26.674 26.703 Atomic orbital electron populations 1.22532 0.96526 1.02460 1.02709 1.21519 0.92963 0.97848 0.88758 0.89353 1.60119 1.58329 1.08924 1.02635 1.21535 1.00911 0.95391 0.88707 1.20907 0.83309 0.88006 0.85129 1.90492 1.56589 1.18324 1.85461 1.41939 1.58374 1.12621 1.08240 1.19668 1.42079 0.95986 0.88587 0.90312 1.26006 0.97257 0.96587 1.01325 1.69668 1.48664 1.09700 1.28119 0.84949 0.78496 0.78037 0.76995 1.19656 1.19671 1.19795 1.22166 0.96132 0.99736 0.91748 0.90306 1.22524 0.95202 1.03603 0.93740 1.22318 0.85215 1.02136 0.92643 1.48719 1.14345 1.67115 1.05163 1.21081 0.89865 0.76333 0.81711 1.90682 1.27912 1.51547 1.77169 1.21653 0.96532 1.05237 0.92863 1.20840 0.96555 1.01324 0.92070 1.22342 1.00838 1.03124 0.90945 1.23123 1.00670 0.94164 1.03873 1.23045 1.01049 1.01618 0.96632 1.22199 0.92537 0.99650 0.86668 0.90841 0.92437 0.92687 0.83759 0.87757 0.91910 0.77030 0.91367 0.90460 0.89901 0.89353 0.89748 0.86788 0.86769 0.92485 0.92713 0.86229 0.89225 0.87732 0.87791 0.89394 0.91708 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 8.94 71.98 0.64 -2.82 16 2 C 0.10 2.03 2.12 44.92 0.10 2.12 16 3 H 0.09 1.69 7.74 -2.39 -0.02 1.67 16 4 N -0.67 -18.86 5.73 -495.58 -2.84 -21.70 16 5 C 0.07 2.14 5.96 85.56 0.51 2.65 16 6 C 0.44 20.15 7.82 87.66 0.69 20.84 16 7 O -0.62 -33.46 15.78 -3.07 -0.05 -33.50 16 8 N -0.57 -28.85 5.29 -306.98 -1.62 -30.47 16 9 C -0.33 -18.70 9.68 84.04 0.81 -17.89 16 10 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 11 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 12 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 13 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 C -0.08 -1.45 2.79 -9.40 -0.03 -1.47 16 18 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 19 C -0.11 -1.90 6.28 31.78 0.20 -1.70 16 20 C 0.10 1.29 6.50 86.70 0.56 1.86 16 21 N -0.62 -11.30 3.33 -811.37 -2.70 -14.00 16 22 C 0.52 10.81 7.85 87.66 0.69 11.50 16 23 O -0.59 -17.52 16.24 -3.03 -0.05 -17.56 16 24 C -0.12 -1.56 4.86 29.85 0.14 -1.42 16 25 C -0.07 -1.04 4.79 30.60 0.15 -0.89 16 26 C -0.15 -1.69 5.73 -10.79 -0.06 -1.75 16 27 C -0.18 -1.89 10.18 30.62 0.31 -1.58 16 28 C -0.19 -2.04 10.25 30.62 0.31 -1.73 16 29 C 0.11 2.14 5.27 86.85 0.46 2.60 16 30 H 0.07 1.22 7.23 -2.39 -0.02 1.20 16 31 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 32 H 0.05 1.08 7.45 -2.39 -0.02 1.07 16 33 H 0.34 10.57 8.17 -89.70 -0.73 9.83 16 34 H 0.10 2.97 8.06 -2.39 -0.02 2.95 16 35 H 0.06 1.79 7.44 -2.39 -0.02 1.77 16 36 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 37 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.08 1.31 7.99 -2.39 -0.02 1.29 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 45 H 0.05 0.98 7.83 -2.38 -0.02 0.96 16 46 H 0.12 0.97 8.08 -2.39 -0.02 0.95 16 47 H 0.09 1.01 8.03 -2.39 -0.02 0.99 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.06 1.40 7.94 -2.39 -0.02 1.38 16 52 H 0.07 1.31 8.03 -2.39 -0.02 1.29 16 Total: -1.00 -70.85 421.67 0.45 -70.41 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -0.55 Total: 41.03 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 5.95 Total: 10.15 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -6.88 Total: -115.01 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.10 Total: -51.07 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -70.85 0.45 -70.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278991814.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.202 kcal (2) G-P(sol) polarization free energy of solvation -70.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds