Wall clock time and date at job start Tue Mar 31 2020 19:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46901 * 2 1 4 4 C 1.53001 * 109.47450 * 120.00556 * 2 1 3 5 5 C 1.52996 * 109.47274 * 184.99930 * 4 2 1 6 6 C 1.52999 * 109.47034 * 179.97438 * 5 4 2 7 7 N 1.46905 * 109.46931 * 179.97438 * 6 5 4 8 8 C 1.46900 * 111.00049 * 180.02562 * 7 6 5 9 9 C 1.50693 * 109.47318 * 180.02562 * 8 7 6 10 10 O 1.21296 * 119.99615 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00012 * 180.02562 * 9 8 7 12 12 C 1.37106 * 119.99775 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99969 * 359.97438 * 12 11 9 14 14 C 1.38954 * 119.99722 * 180.02562 * 12 11 9 15 15 N 1.31413 * 120.00069 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99637 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47386 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47170 * 120.00237 * 16 14 12 19 19 H 1.48509 * 109.46998 * 239.99413 * 16 14 12 20 20 N 1.46504 * 109.46736 * 240.00489 * 2 1 3 21 21 C 1.34781 * 119.99984 * 85.00099 * 20 2 1 22 22 O 1.21277 * 120.00073 * 359.97438 * 21 20 2 23 23 C 1.50704 * 119.99479 * 179.97438 * 21 20 2 24 24 H 1.08991 * 109.64098 * 59.57939 * 23 21 20 25 25 C 1.53020 * 109.81515 * 299.04663 * 23 21 20 26 26 C 1.50076 * 110.14324 * 190.77919 * 25 23 21 27 27 C 1.29444 * 124.07409 * 17.13456 * 26 25 23 28 28 C 1.50065 * 124.07627 * 359.53081 * 27 26 25 29 29 C 1.53020 * 110.14790 * 17.12844 * 28 27 26 30 30 H 1.08993 * 109.47005 * 59.99811 * 1 2 3 31 31 H 1.08995 * 109.46736 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46476 * 299.99314 * 1 2 3 33 33 H 1.09003 * 109.46673 * 305.00111 * 4 2 1 34 34 H 1.09001 * 109.46949 * 64.99743 * 4 2 1 35 35 H 1.08999 * 109.46921 * 300.00276 * 5 4 2 36 36 H 1.09003 * 109.47069 * 59.99514 * 5 4 2 37 37 H 1.08995 * 109.47175 * 299.99613 * 6 5 4 38 38 H 1.08992 * 109.46900 * 60.00234 * 6 5 4 39 39 H 1.00903 * 110.99623 * 56.04844 * 7 6 5 40 40 H 1.09002 * 109.46542 * 300.00407 * 8 7 6 41 41 H 1.09000 * 109.47130 * 59.99917 * 8 7 6 42 42 H 0.96990 * 120.00266 * 359.97438 * 11 9 8 43 43 H 0.97000 * 120.00191 * 180.02562 * 15 14 12 44 44 H 0.97000 * 119.99834 * 264.99413 * 20 2 1 45 45 H 1.08999 * 109.35480 * 70.57947 * 25 23 21 46 46 H 1.08995 * 109.36342 * 310.98488 * 25 23 21 47 47 H 1.08002 * 117.96076 * 197.40876 * 26 25 23 48 48 H 1.07995 * 117.95736 * 179.55009 * 27 26 25 49 49 H 1.08999 * 109.35990 * 137.33904 * 28 27 26 50 50 H 1.09000 * 109.35584 * 256.92547 * 28 27 26 51 51 H 1.09005 * 109.64107 * 70.25597 * 29 28 27 52 52 H 1.08998 * 109.64233 * 190.66554 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0402 -0.7214 1.2492 5 6 3.5649 -0.6134 1.3136 6 6 4.0749 -1.3342 2.5630 7 7 5.5390 -1.2311 2.6245 8 6 6.0654 -1.9140 3.8139 9 6 7.5667 -1.7866 3.8431 10 8 8.1416 -1.1863 2.9597 11 7 8.2705 -2.3404 4.8502 12 6 9.6364 -2.2249 4.8764 13 1 10.1484 -1.6905 4.0899 14 6 10.3621 -2.7965 5.9145 15 7 9.7392 -3.4472 6.8713 16 14 12.2232 -2.6397 5.9498 17 1 12.6774 -1.8660 4.7665 18 1 12.6372 -1.9364 7.1904 19 1 12.8345 -3.9928 5.9205 20 7 2.0183 -0.6905 -1.1963 21 6 2.1470 -0.0181 -2.3572 22 8 1.8582 1.1586 -2.4117 23 6 2.6498 -0.7284 -3.5876 24 1 1.9836 -1.5559 -3.8308 25 6 4.0623 -1.2613 -3.3380 26 6 4.6711 -1.7347 -4.6255 27 6 4.2281 -1.4132 -5.7985 28 6 3.0379 -0.5303 -6.0349 29 6 2.7029 0.2540 -4.7645 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 1.6055 -0.2619 2.1369 34 1 1.7518 -1.7716 1.2054 35 1 3.9995 -1.0728 0.4257 36 1 3.8533 0.4369 1.3572 37 1 3.6404 -0.8744 3.4506 38 1 3.7866 -2.3844 2.5197 39 1 5.8349 -0.2667 2.6003 40 1 5.6449 -1.4582 4.7103 41 1 5.7905 -2.9681 3.7790 42 1 7.8108 -2.8207 5.5564 43 1 10.2457 -3.8458 7.5961 44 1 2.2491 -1.6317 -1.1528 45 1 4.0159 -2.0918 -2.6336 46 1 4.6791 -0.4673 -2.9173 47 1 5.5295 -2.3877 -4.5698 48 1 4.7473 -1.8050 -6.6607 49 1 3.2603 0.1674 -6.8423 50 1 2.1826 -1.1447 -6.3164 51 1 3.4736 1.0030 -4.5823 52 1 1.7362 0.7441 -4.8807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283128110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:18 Heat of formation + Delta-G solvation = -89.262344 kcal Electronic energy + Delta-G solvation = -28486.799591 eV Core-core repulsion = 24484.996767 eV Total energy + Delta-G solvation = -4001.802824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.54870 -38.40110 -38.17839 -36.93902 -35.47957 -33.88979 -32.78694 -31.61489 -31.21573 -31.07850 -30.12893 -27.32804 -25.20839 -24.43694 -23.56057 -23.12507 -21.53023 -21.09479 -20.54316 -19.20695 -18.25038 -17.87897 -17.59209 -16.70635 -16.20099 -15.94776 -15.64995 -15.03527 -14.81448 -14.59675 -14.49354 -14.25270 -14.05047 -13.90167 -13.71701 -13.59859 -13.31692 -13.28750 -13.11602 -12.75610 -12.58249 -12.50037 -12.36885 -12.01313 -11.67436 -11.56779 -11.44167 -11.36432 -11.27890 -11.10779 -11.07602 -10.91910 -10.75812 -10.67535 -10.34449 -10.22511 -9.87570 -9.52136 -9.32051 -9.29656 -8.45942 -8.05110 -7.95803 -6.42004 -3.82727 1.98800 2.42895 2.92661 3.16181 3.26720 3.34226 3.90907 4.05087 4.21736 4.26686 4.33655 4.49372 4.57567 4.75950 4.84427 4.85106 4.89872 4.99428 5.05067 5.09051 5.16405 5.19965 5.24405 5.27387 5.32329 5.34243 5.38963 5.52307 5.52866 5.57777 5.60903 5.64867 5.67352 5.77026 5.80577 5.87498 5.92524 5.97767 5.98616 6.07596 6.17973 6.28434 6.30164 6.33668 6.63524 7.23434 7.26904 7.55297 7.67263 8.01450 8.06674 8.61274 9.17911 9.54382 10.05889 10.75843 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.001868 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.923110 B =14985.995206 C =16809.629090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.565 5.565 12 C -0.298 4.298 13 H 0.104 0.896 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.281 1.281 20 N -0.723 5.723 21 C 0.520 3.480 22 O -0.540 6.540 23 C -0.107 4.107 24 H 0.097 0.903 25 C -0.083 4.083 26 C -0.151 4.151 27 C -0.159 4.159 28 C -0.092 4.092 29 C -0.100 4.100 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.349 0.651 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.400 0.600 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.718 1.777 -18.002 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.071 4.071 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.207 1.207 20 N -0.375 5.375 21 C 0.306 3.694 22 O -0.417 6.417 23 C -0.129 4.129 24 H 0.115 0.885 25 C -0.120 4.120 26 C -0.169 4.169 27 C -0.178 4.178 28 C -0.129 4.129 29 C -0.137 4.137 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.168 0.832 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.235 0.765 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.126 0.874 48 H 0.121 0.879 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.090 0.910 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.340 2.408 -18.866 27.847 hybrid contribution 0.565 -0.327 1.384 1.531 sum -19.775 2.081 -17.481 26.476 Atomic orbital electron populations 1.22170 0.95370 1.02042 1.02511 1.20993 0.93739 0.97739 0.83889 0.89368 1.21874 0.96302 1.01105 0.97097 1.21555 0.93977 1.01058 0.98889 1.21973 0.88289 1.00465 0.96332 1.60073 1.08043 1.21482 1.40693 1.21665 0.94990 1.00089 0.91448 1.19834 0.88138 0.84952 0.84477 1.90524 1.71173 1.46284 1.38732 1.41875 1.07429 1.48485 1.22343 1.19761 0.81515 1.32677 1.08834 0.87868 1.25272 1.00723 0.96597 0.95456 1.69621 1.36601 1.35955 1.12181 0.85796 0.82215 0.78006 0.78305 1.19207 1.20777 1.20740 1.46137 1.67499 1.14135 1.09700 1.20623 0.77003 0.87235 0.84509 1.90694 1.49952 1.16018 1.85005 1.21407 0.98228 0.99547 0.93673 0.88487 1.20426 0.93772 1.01199 0.96595 1.22012 1.00416 1.00592 0.93861 1.22074 0.98447 0.99742 0.97489 1.20489 0.96594 0.97781 0.98022 1.21418 1.03073 0.96911 0.92343 0.92215 0.92503 0.91610 0.90349 0.91208 0.90840 0.91922 0.95691 0.91267 0.83222 0.93973 0.89679 0.77472 0.91939 0.76511 0.90270 0.89967 0.87369 0.87864 0.90729 0.90896 0.91034 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.49 37.16 0.35 -0.84 16 2 C 0.14 1.14 2.57 -67.92 -0.17 0.96 16 3 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16 4 C -0.13 -0.90 4.75 -26.73 -0.13 -1.03 16 5 C -0.12 -1.13 5.36 -26.73 -0.14 -1.28 16 6 C 0.06 0.68 5.69 -3.82 -0.02 0.66 16 7 N -0.67 -10.79 6.13 -115.06 -0.70 -11.49 16 8 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 9 C 0.44 10.50 7.82 -10.99 -0.09 10.41 16 10 O -0.58 -16.02 15.78 5.54 0.09 -15.93 16 11 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 12 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 13 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 14 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 15 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 16 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 N -0.72 -5.59 4.45 -53.80 -0.24 -5.83 16 21 C 0.52 5.10 7.10 -10.98 -0.08 5.02 16 22 O -0.54 -7.35 15.57 5.56 0.09 -7.26 16 23 C -0.11 -0.83 2.57 -91.56 -0.24 -1.06 16 24 H 0.10 0.61 8.12 -51.93 -0.42 0.19 16 25 C -0.08 -0.64 5.30 -28.17 -0.15 -0.79 16 26 C -0.15 -1.16 9.80 -35.90 -0.35 -1.51 16 27 C -0.16 -1.15 9.80 -35.90 -0.35 -1.50 16 28 C -0.09 -0.61 6.11 -28.18 -0.17 -0.78 16 29 C -0.10 -0.82 4.69 -26.52 -0.12 -0.94 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.35 5.88 8.43 -39.29 -0.33 5.55 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.40 2.31 8.36 -40.82 -0.34 1.96 16 45 H 0.08 0.51 7.96 -51.93 -0.41 0.10 16 46 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.11 0.79 8.06 -52.49 -0.42 0.36 16 48 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 52 H 0.07 0.64 7.91 -51.93 -0.41 0.23 16 LS Contribution 423.06 15.07 6.38 6.38 Total: -1.00 -33.29 423.06 -10.00 -43.28 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -9.31 Total: 12.96 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.94 Total: 0.14 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.28 Total: -55.66 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.29 -10.00 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283128110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.979 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds