Wall clock time and date at job start Tue Mar 31 2020 19:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47354 * 2 1 4 4 C 1.52997 * 109.47216 * 240.00051 * 2 1 3 5 5 C 1.53007 * 109.47290 * 174.99984 * 4 2 1 6 6 C 1.52997 * 109.47290 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47125 * 179.97438 * 6 5 4 8 8 C 1.46898 * 110.99614 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46984 * 180.02562 * 8 7 6 10 10 O 1.21295 * 119.99863 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.37105 * 119.99873 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99509 * 359.71860 * 12 11 9 14 14 C 1.38950 * 120.00048 * 179.72298 * 12 11 9 15 15 N 1.31413 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47112 * 89.99702 * 16 14 12 18 18 H 1.48498 * 109.47011 * 209.99970 * 16 14 12 19 19 H 1.48499 * 109.47134 * 329.99591 * 16 14 12 20 20 N 1.46501 * 109.47037 * 120.00046 * 2 1 3 21 21 C 1.34771 * 120.00018 * 274.99731 * 20 2 1 22 22 O 1.21276 * 120.00209 * 0.02562 * 21 20 2 23 23 C 1.50706 * 120.00004 * 180.02562 * 21 20 2 24 24 H 1.08997 * 109.64080 * 60.00045 * 23 21 20 25 25 C 1.53028 * 109.64013 * 299.58171 * 23 21 20 26 26 C 1.50070 * 110.14364 * 190.87979 * 25 23 21 27 27 C 1.29444 * 124.07696 * 17.13311 * 26 25 23 28 28 C 1.50066 * 124.07586 * 359.50475 * 27 26 25 29 29 C 1.52977 * 110.28660 * 17.02608 * 28 27 26 30 30 H 1.09001 * 109.47214 * 59.99671 * 1 2 3 31 31 H 1.08999 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46953 * 299.99993 * 1 2 3 33 33 H 1.09002 * 109.46945 * 55.00008 * 4 2 1 34 34 H 1.08996 * 109.47478 * 294.99910 * 4 2 1 35 35 H 1.08998 * 109.46615 * 60.00144 * 5 4 2 36 36 H 1.08996 * 109.46800 * 300.00341 * 5 4 2 37 37 H 1.09002 * 109.46945 * 60.00024 * 6 5 4 38 38 H 1.09000 * 109.47247 * 300.00386 * 6 5 4 39 39 H 1.00897 * 110.99725 * 56.05049 * 7 6 5 40 40 H 1.09004 * 109.47320 * 60.00702 * 8 7 6 41 41 H 1.09001 * 109.47291 * 299.99999 * 8 7 6 42 42 H 0.96996 * 119.99858 * 359.72084 * 11 9 8 43 43 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 44 44 H 0.97005 * 119.99871 * 95.00178 * 20 2 1 45 45 H 1.08997 * 109.35899 * 311.08668 * 25 23 21 46 46 H 1.09001 * 109.35482 * 70.67480 * 25 23 21 47 47 H 1.08006 * 117.95880 * 197.10818 * 26 25 23 48 48 H 1.07994 * 117.96004 * 179.53088 * 27 26 25 49 49 H 1.08997 * 109.35621 * 137.36272 * 28 27 26 50 50 H 1.09002 * 109.36135 * 256.95068 * 28 27 26 51 51 H 1.09003 * 109.79127 * 191.07763 * 29 28 27 52 52 H 1.08996 * 109.47484 * 70.46025 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0749 -1.3339 -2.5632 7 7 5.5388 -1.2297 -2.6254 8 6 6.0651 -1.9125 -3.8149 9 6 7.5665 -1.7851 -3.8441 10 8 8.1414 -1.1842 -2.9612 11 7 8.2701 -2.3380 -4.8519 12 6 9.6361 -2.2225 -4.8782 13 1 10.1476 -1.6846 -4.0938 14 6 10.3621 -2.7974 -5.9141 15 7 9.7395 -3.4522 -6.8683 16 14 12.2230 -2.6394 -5.9503 17 1 12.8310 -3.7818 -5.2220 18 1 12.6929 -2.6439 -7.3590 19 1 12.6246 -1.3669 -5.2987 20 7 2.0183 -0.6906 1.1962 21 6 2.1471 -0.0183 2.3571 22 8 1.8583 1.1583 2.4117 23 6 2.6499 -0.7286 3.5875 24 1 3.6493 -1.1216 3.4009 25 6 1.7031 -1.8776 3.9411 26 6 2.0367 -2.4229 5.2989 27 6 2.7565 -1.7980 6.1747 28 6 3.3667 -0.4454 5.9507 29 6 2.6930 0.2511 4.7670 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6054 -0.2617 -2.1369 34 1 1.7517 -1.7715 -1.2056 35 1 3.9994 -1.0728 -0.4260 36 1 3.8532 0.4370 -1.3573 37 1 3.6402 -0.8740 -3.4507 38 1 3.7864 -2.3842 -2.5201 39 1 5.9631 -1.5909 -1.7842 40 1 5.6440 -1.4572 -4.7113 41 1 5.7909 -2.9669 -3.7797 42 1 7.8106 -2.8213 -5.5562 43 1 10.2463 -3.8532 -7.5917 44 1 2.2490 -1.6318 1.1526 45 1 0.6761 -1.5126 3.9407 46 1 1.8033 -2.6697 3.1990 47 1 1.6520 -3.3973 5.5618 48 1 2.9288 -2.2801 7.1255 49 1 3.2400 0.1611 6.8475 50 1 4.4304 -0.5591 5.7412 51 1 3.2630 1.1370 4.4869 52 1 1.6781 0.5369 5.0432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283128111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:21 Heat of formation + Delta-G solvation = -89.033889 kcal Electronic energy + Delta-G solvation = -28305.457082 eV Core-core repulsion = 24303.664165 eV Total energy + Delta-G solvation = -4001.792917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58158 -38.42190 -38.20497 -36.95083 -35.48597 -33.88789 -32.81899 -31.64733 -31.24090 -31.11190 -30.17923 -27.32474 -25.20263 -24.49110 -23.59909 -23.15380 -21.53583 -21.11082 -20.57009 -19.20479 -18.32861 -17.87772 -17.62380 -16.78114 -16.18593 -15.85805 -15.65392 -15.25859 -14.76572 -14.64633 -14.46978 -14.27511 -14.09525 -13.86754 -13.76110 -13.70170 -13.41461 -13.27477 -13.10965 -12.73191 -12.66355 -12.49936 -12.38241 -11.92761 -11.81048 -11.56183 -11.43293 -11.37504 -11.31976 -11.16960 -11.04812 -10.87520 -10.78189 -10.74146 -10.39185 -10.21533 -9.89929 -9.50817 -9.41130 -9.32625 -8.45653 -8.04624 -7.95543 -6.41609 -3.82396 1.88063 2.41301 2.90308 3.17931 3.26520 3.32843 3.91196 4.05127 4.17328 4.23982 4.27092 4.42885 4.58998 4.77213 4.80036 4.81375 4.83367 4.90573 5.03098 5.07498 5.14295 5.15076 5.22109 5.25122 5.27339 5.31884 5.42700 5.43518 5.51962 5.52652 5.54222 5.57823 5.68996 5.76935 5.80826 5.84843 5.91023 5.93517 5.99050 6.07837 6.18712 6.23160 6.28071 6.30434 6.52709 7.23038 7.25308 7.55393 7.67651 7.99622 8.06730 8.61625 9.18110 9.54590 10.06216 10.76155 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.001720 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.204927 B =16272.285736 C =17638.317974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.670 5.670 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.564 5.564 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 N -0.723 5.723 21 C 0.520 3.480 22 O -0.539 6.539 23 C -0.110 4.110 24 H 0.101 0.899 25 C -0.079 4.079 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.095 4.095 29 C -0.099 4.099 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.024 0.976 39 H 0.348 0.652 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.399 0.601 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.076 0.924 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.632 0.085 19.222 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.429 4.429 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.758 3.242 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 N -0.375 5.375 21 C 0.306 3.694 22 O -0.415 6.415 23 C -0.131 4.131 24 H 0.119 0.881 25 C -0.116 4.116 26 C -0.176 4.176 27 C -0.169 4.169 28 C -0.132 4.132 29 C -0.137 4.137 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.233 0.767 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.372 1.878 19.364 28.900 hybrid contribution 0.634 -1.893 -0.398 2.035 sum -20.738 -0.015 18.966 28.103 Atomic orbital electron populations 1.22166 0.95345 1.01998 1.02553 1.21005 0.93757 0.97829 0.83799 0.89228 1.21873 0.96325 1.00915 0.97236 1.21554 0.93946 1.02285 0.97681 1.21977 0.88788 0.97781 0.98488 1.60067 1.03679 1.61083 1.05430 1.21670 0.95203 0.96609 0.94706 1.19836 0.88066 0.84762 0.84761 1.90523 1.71151 1.45932 1.39128 1.41868 1.07425 1.48348 1.22453 1.19710 0.81513 1.32539 1.09100 0.87925 1.25269 1.00722 0.96595 0.95426 1.69614 1.36682 1.35712 1.12352 0.85848 0.82166 0.78912 0.77315 1.20434 1.20920 1.19394 1.46138 1.67597 1.14034 1.09749 1.20604 0.77165 0.87211 0.84418 1.90699 1.49728 1.16037 1.85043 1.21431 1.01146 0.97057 0.93461 0.88140 1.20389 0.99180 0.96397 0.95676 1.21957 1.00414 0.99952 0.95307 1.22114 0.98863 0.96855 0.99110 1.20510 0.99979 0.94012 0.98689 1.21404 1.02081 0.97384 0.92793 0.91554 0.92552 0.92220 0.90098 0.91455 0.92036 0.90763 0.91179 0.95774 0.83310 0.89645 0.93991 0.77466 0.91890 0.76650 0.90459 0.90547 0.87604 0.87820 0.90614 0.90548 0.90484 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.14 1.13 2.57 -67.93 -0.17 0.96 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -0.90 4.75 -26.73 -0.13 -1.03 16 5 C -0.12 -1.15 5.36 -26.73 -0.14 -1.29 16 6 C 0.06 0.69 5.68 -3.83 -0.02 0.67 16 7 N -0.67 -10.90 6.13 -115.05 -0.70 -11.60 16 8 C 0.05 0.91 6.17 -4.97 -0.03 0.87 16 9 C 0.44 10.54 7.82 -10.98 -0.09 10.45 16 10 O -0.58 -16.09 15.78 5.54 0.09 -16.00 16 11 N -0.56 -14.44 5.29 -10.96 -0.06 -14.49 16 12 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 13 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 14 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 15 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 16 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 N -0.72 -5.47 4.44 -53.81 -0.24 -5.71 16 21 C 0.52 5.02 7.10 -10.98 -0.08 4.94 16 22 O -0.54 -7.30 15.56 5.56 0.09 -7.21 16 23 C -0.11 -0.82 2.57 -91.55 -0.24 -1.05 16 24 H 0.10 0.70 8.13 -51.93 -0.42 0.28 16 25 C -0.08 -0.47 5.29 -28.17 -0.15 -0.62 16 26 C -0.16 -0.97 9.80 -35.90 -0.35 -1.32 16 27 C -0.15 -0.96 9.81 -35.90 -0.35 -1.31 16 28 C -0.09 -0.62 6.11 -28.20 -0.17 -0.79 16 29 C -0.10 -0.79 4.70 -26.54 -0.12 -0.92 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.40 2.17 8.30 -40.82 -0.34 1.84 16 45 H 0.08 0.50 8.10 -51.93 -0.42 0.07 16 46 H 0.08 0.34 7.91 -51.93 -0.41 -0.07 16 47 H 0.11 0.54 8.06 -52.48 -0.42 0.11 16 48 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.08 0.71 7.90 -51.93 -0.41 0.29 16 52 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 422.93 15.07 6.37 6.37 Total: -1.00 -33.50 422.93 -9.99 -43.50 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -9.30 Total: 12.26 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.94 Total: 0.66 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.28 Total: -55.69 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -33.50 -9.99 -43.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283128111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.538 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds