Wall clock time and date at job start Tue Mar 31 2020 19:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47354 * 2 1 4 4 C 1.52997 * 109.47216 * 240.00051 * 2 1 3 5 5 C 1.53007 * 109.47290 * 174.99984 * 4 2 1 6 6 C 1.52997 * 109.47290 * 180.02562 * 5 4 2 7 7 N 1.46901 * 109.47125 * 179.97438 * 6 5 4 8 8 C 1.46898 * 110.99614 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46984 * 180.02562 * 8 7 6 10 10 O 1.21295 * 119.99863 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.37105 * 119.99873 * 180.02562 * 11 9 8 13 13 H 1.08000 * 119.99509 * 359.71860 * 12 11 9 14 14 C 1.38950 * 120.00048 * 179.72298 * 12 11 9 15 15 N 1.31413 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47112 * 89.99702 * 16 14 12 18 18 H 1.48498 * 109.47011 * 209.99970 * 16 14 12 19 19 H 1.48499 * 109.47134 * 329.99591 * 16 14 12 20 20 N 1.46501 * 109.47037 * 120.00046 * 2 1 3 21 21 C 1.34771 * 120.00018 * 274.99731 * 20 2 1 22 22 O 1.21276 * 120.00209 * 0.02562 * 21 20 2 23 23 C 1.50706 * 120.00004 * 180.02562 * 21 20 2 24 24 H 1.08997 * 109.64080 * 60.00045 * 23 21 20 25 25 C 1.53028 * 109.64013 * 299.58171 * 23 21 20 26 26 C 1.50070 * 110.14364 * 190.87979 * 25 23 21 27 27 C 1.29444 * 124.07696 * 17.13311 * 26 25 23 28 28 C 1.50066 * 124.07586 * 359.50475 * 27 26 25 29 29 C 1.52977 * 110.28660 * 17.02608 * 28 27 26 30 30 H 1.09001 * 109.47214 * 59.99671 * 1 2 3 31 31 H 1.08999 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46953 * 299.99993 * 1 2 3 33 33 H 1.09002 * 109.46945 * 55.00008 * 4 2 1 34 34 H 1.08996 * 109.47478 * 294.99910 * 4 2 1 35 35 H 1.08998 * 109.46615 * 60.00144 * 5 4 2 36 36 H 1.08996 * 109.46800 * 300.00341 * 5 4 2 37 37 H 1.09002 * 109.46945 * 60.00024 * 6 5 4 38 38 H 1.09000 * 109.47247 * 300.00386 * 6 5 4 39 39 H 1.00897 * 110.99725 * 56.05049 * 7 6 5 40 40 H 1.09004 * 109.47320 * 60.00702 * 8 7 6 41 41 H 1.09001 * 109.47291 * 299.99999 * 8 7 6 42 42 H 0.96996 * 119.99858 * 359.72084 * 11 9 8 43 43 H 0.96999 * 119.99993 * 179.97438 * 15 14 12 44 44 H 0.97005 * 119.99871 * 95.00178 * 20 2 1 45 45 H 1.08997 * 109.35899 * 311.08668 * 25 23 21 46 46 H 1.09001 * 109.35482 * 70.67480 * 25 23 21 47 47 H 1.08006 * 117.95880 * 197.10818 * 26 25 23 48 48 H 1.07994 * 117.96004 * 179.53088 * 27 26 25 49 49 H 1.08997 * 109.35621 * 137.36272 * 28 27 26 50 50 H 1.09002 * 109.36135 * 256.95068 * 28 27 26 51 51 H 1.09003 * 109.79127 * 191.07763 * 29 28 27 52 52 H 1.08996 * 109.47484 * 70.46025 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0749 -1.3339 -2.5632 7 7 5.5388 -1.2297 -2.6254 8 6 6.0651 -1.9125 -3.8149 9 6 7.5665 -1.7851 -3.8441 10 8 8.1414 -1.1842 -2.9612 11 7 8.2701 -2.3380 -4.8519 12 6 9.6361 -2.2225 -4.8782 13 1 10.1476 -1.6846 -4.0938 14 6 10.3621 -2.7974 -5.9141 15 7 9.7395 -3.4522 -6.8683 16 14 12.2230 -2.6394 -5.9503 17 1 12.8310 -3.7818 -5.2220 18 1 12.6929 -2.6439 -7.3590 19 1 12.6246 -1.3669 -5.2987 20 7 2.0183 -0.6906 1.1962 21 6 2.1471 -0.0183 2.3571 22 8 1.8583 1.1583 2.4117 23 6 2.6499 -0.7286 3.5875 24 1 3.6493 -1.1216 3.4009 25 6 1.7031 -1.8776 3.9411 26 6 2.0367 -2.4229 5.2989 27 6 2.7565 -1.7980 6.1747 28 6 3.3667 -0.4454 5.9507 29 6 2.6930 0.2511 4.7670 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6054 -0.2617 -2.1369 34 1 1.7517 -1.7715 -1.2056 35 1 3.9994 -1.0728 -0.4260 36 1 3.8532 0.4370 -1.3573 37 1 3.6402 -0.8740 -3.4507 38 1 3.7864 -2.3842 -2.5201 39 1 5.9631 -1.5909 -1.7842 40 1 5.6440 -1.4572 -4.7113 41 1 5.7909 -2.9669 -3.7797 42 1 7.8106 -2.8213 -5.5562 43 1 10.2463 -3.8532 -7.5917 44 1 2.2490 -1.6318 1.1526 45 1 0.6761 -1.5126 3.9407 46 1 1.8033 -2.6697 3.1990 47 1 1.6520 -3.3973 5.5618 48 1 2.9288 -2.2801 7.1255 49 1 3.2400 0.1611 6.8475 50 1 4.4304 -0.5591 5.7412 51 1 3.2630 1.1370 4.4869 52 1 1.6781 0.5369 5.0432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283128111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:20 Heat of formation + Delta-G solvation = -112.162469 kcal Electronic energy + Delta-G solvation = -28306.460012 eV Core-core repulsion = 24303.664165 eV Total energy + Delta-G solvation = -4002.795848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29846 -40.16483 -38.91162 -37.84904 -36.62894 -35.85162 -33.67871 -33.25527 -32.32967 -31.74286 -30.87353 -28.64596 -26.67869 -25.29007 -24.70277 -23.86057 -22.42392 -21.79537 -21.29039 -21.03121 -19.90636 -18.86578 -18.28203 -17.84585 -17.45286 -17.02235 -16.53692 -16.44074 -16.00694 -15.95538 -15.63062 -15.32627 -15.19354 -14.96931 -14.68002 -14.47240 -14.20234 -14.15400 -14.07885 -13.84029 -13.51703 -13.34314 -13.21434 -13.15505 -13.00026 -12.94803 -12.76256 -12.43054 -12.38588 -12.14598 -12.08314 -11.97579 -11.76033 -11.65544 -11.55872 -11.50967 -11.32244 -10.65781 -10.36049 -10.04793 -10.02392 -9.87592 -9.29639 -8.47381 -5.96246 1.37698 1.41635 1.41791 1.54508 1.65882 2.04298 2.24623 2.28955 2.92992 3.19731 3.50426 3.58525 3.71594 3.80365 3.87188 4.07167 4.11666 4.22390 4.29459 4.31974 4.37669 4.40273 4.44927 4.48208 4.51113 4.58628 4.60287 4.66371 4.71352 4.72805 4.84096 4.88583 4.91528 4.92934 5.01311 5.04542 5.12242 5.24875 5.27236 5.30820 5.32668 5.40124 5.42641 5.61963 5.77173 5.90709 6.06073 6.13410 6.43244 6.59347 6.59628 7.11861 7.29788 7.55373 8.10924 8.69924 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.001720 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.204927 B =16272.285736 C =17638.317974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.060 0.940 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.061 3.939 7 N -0.691 5.691 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.625 6.625 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.274 1.274 20 N -0.711 5.711 21 C 0.516 3.484 22 O -0.585 6.585 23 C -0.105 4.105 24 H 0.109 0.891 25 C -0.076 4.076 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.093 4.093 29 C -0.099 4.099 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.342 0.658 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.413 0.587 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.115 0.885 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.058 0.942 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.566 -1.967 18.799 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.067 4.067 7 N -0.323 5.323 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.465 4.465 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.199 1.199 20 N -0.363 5.363 21 C 0.303 3.697 22 O -0.465 6.465 23 C -0.126 4.126 24 H 0.127 0.873 25 C -0.113 4.113 26 C -0.179 4.179 27 C -0.180 4.180 28 C -0.129 4.129 29 C -0.137 4.137 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.161 0.839 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.250 0.750 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.139 0.861 48 H 0.133 0.867 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.076 0.924 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.338 -0.222 18.912 29.270 hybrid contribution 0.884 -1.219 -0.259 1.528 sum -21.455 -1.441 18.652 28.466 Atomic orbital electron populations 1.22098 0.94343 1.02929 1.02008 1.20964 0.94467 0.96605 0.84377 0.92169 1.21780 0.94071 1.02260 0.96898 1.21479 0.95836 1.00512 0.97010 1.22070 0.85832 0.99344 0.99449 1.60079 1.06372 1.61302 1.04547 1.21529 0.90274 0.98626 0.96224 1.20962 0.90690 0.82834 0.83232 1.90490 1.72867 1.47381 1.40477 1.41936 1.06888 1.48953 1.23218 1.19664 0.83070 1.34149 1.09581 0.90433 1.26049 1.04964 0.95682 0.94606 1.69669 1.38282 1.35531 1.12520 0.84922 0.76803 0.78705 0.77871 1.19492 1.19478 1.19933 1.46065 1.66595 1.14579 1.09068 1.21019 0.76496 0.86731 0.85425 1.90678 1.51928 1.18096 1.85797 1.21427 1.01881 0.97235 0.92107 0.87334 1.20400 0.98299 0.96132 0.96436 1.22123 1.00163 1.00507 0.95088 1.22234 0.99273 0.96633 0.99836 1.20491 0.99942 0.94385 0.98123 1.21359 1.01213 0.97198 0.93924 0.90603 0.90782 0.94318 0.89123 0.89077 0.92030 0.93194 0.90554 0.93580 0.83917 0.87928 0.91357 0.76904 0.91259 0.75033 0.90930 0.88443 0.86145 0.86688 0.90019 0.90318 0.92367 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 71.98 0.68 -1.36 16 2 C 0.14 2.13 2.57 44.99 0.12 2.25 16 3 H 0.06 1.30 7.58 -2.39 -0.02 1.28 16 4 C -0.11 -1.33 4.75 30.60 0.15 -1.18 16 5 C -0.11 -2.00 5.36 30.60 0.16 -1.83 16 6 C 0.06 1.28 5.68 86.30 0.49 1.77 16 7 N -0.69 -21.52 6.13 -517.92 -3.17 -24.69 16 8 C 0.07 2.23 6.17 85.56 0.53 2.76 16 9 C 0.44 20.90 7.82 87.66 0.69 21.58 16 10 O -0.63 -35.26 15.78 -3.08 -0.05 -35.31 16 11 N -0.57 -29.54 5.29 -306.97 -1.62 -31.16 16 12 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 15 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 16 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 N -0.71 -10.02 4.44 -442.54 -1.97 -11.98 16 21 C 0.52 10.08 7.10 87.66 0.62 10.70 16 22 O -0.58 -16.78 15.56 -3.02 -0.05 -16.82 16 23 C -0.11 -1.54 2.57 -11.40 -0.03 -1.57 16 24 H 0.11 1.42 8.13 -2.39 -0.02 1.40 16 25 C -0.08 -0.78 5.29 29.66 0.16 -0.63 16 26 C -0.16 -1.69 9.80 27.04 0.27 -1.42 16 27 C -0.16 -1.85 9.81 27.04 0.27 -1.58 16 28 C -0.09 -1.18 6.11 29.64 0.18 -0.99 16 29 C -0.10 -1.66 4.70 30.72 0.14 -1.52 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.11 7.75 -2.39 -0.02 1.09 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.34 11.20 8.43 -89.70 -0.76 10.44 16 40 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 43 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.41 3.53 8.30 -92.70 -0.77 2.76 16 45 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16 46 H 0.10 0.60 7.91 -2.39 -0.02 0.58 16 47 H 0.12 0.92 8.06 -2.91 -0.02 0.90 16 48 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 49 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.06 1.17 7.90 -2.39 -0.02 1.15 16 52 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 Total: -1.00 -74.56 422.93 -0.19 -74.75 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -1.34 Total: 40.99 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.70 Total: 8.38 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -6.48 Total: -117.03 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.10 Total: -52.13 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -74.56 -0.19 -74.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283128111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.409 kcal (2) G-P(sol) polarization free energy of solvation -74.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds