Wall clock time and date at job start Tue Mar 31 2020 20:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47141 * 175.00155 * 4 2 1 6 6 O 1.21276 * 120.00108 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99667 * 179.97438 * 5 4 2 8 8 C 1.46500 * 119.99649 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.64375 * 323.31246 * 8 7 5 10 10 C 1.55162 * 110.71975 * 199.97636 * 8 7 5 11 11 C 1.54905 * 101.58033 * 277.13941 * 10 8 7 12 12 N 1.47426 * 104.83632 * 322.98997 * 11 10 8 13 13 C 1.36933 * 125.64946 * 204.09406 * 12 11 10 14 14 H 1.08004 * 119.99780 * 180.02562 * 13 12 11 15 15 C 1.38809 * 120.00145 * 0.03861 * 13 12 11 16 16 N 1.31620 * 120.00240 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47268 * 120.00014 * 17 15 13 20 20 H 1.48498 * 109.47461 * 240.00197 * 17 15 13 21 21 C 1.47020 * 108.70077 * 24.12856 * 12 11 10 22 22 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 23 23 C 1.34777 * 120.00199 * 275.00460 * 22 2 1 24 24 O 1.21283 * 119.99750 * 359.97438 * 23 22 2 25 25 C 1.50702 * 119.99928 * 180.27479 * 23 22 2 26 26 C 1.54266 * 110.02967 * 297.62805 * 25 23 22 27 27 C 1.54964 * 104.15867 * 217.13705 * 26 25 23 28 28 C 1.54887 * 102.77603 * 37.89089 * 27 26 25 29 29 C 1.53875 * 110.02943 * 180.41285 * 25 23 22 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 33 33 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 34 34 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 35 35 H 0.96999 * 120.00123 * 0.02562 * 7 5 4 36 36 H 1.08998 * 111.00268 * 35.21360 * 10 8 7 37 37 H 1.08993 * 111.00573 * 159.06175 * 10 8 7 38 38 H 1.08998 * 110.36840 * 204.14720 * 11 10 8 39 39 H 1.09004 * 110.36608 * 81.82808 * 11 10 8 40 40 H 0.97000 * 120.00618 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.88347 * 239.52697 * 21 12 11 42 42 H 1.09000 * 109.88663 * 118.35904 * 21 12 11 43 43 H 0.97000 * 119.99484 * 94.99557 * 22 2 1 44 44 H 1.09003 * 110.01781 * 59.01906 * 25 23 22 45 45 H 1.09000 * 110.48704 * 335.78918 * 26 25 23 46 46 H 1.09006 * 110.48336 * 98.42724 * 26 25 23 47 47 H 1.08997 * 110.71776 * 279.57562 * 27 26 25 48 48 H 1.09000 * 110.91947 * 156.30097 * 27 26 25 49 49 H 1.09004 * 110.48597 * 203.40578 * 28 27 26 50 50 H 1.08994 * 110.48692 * 80.76213 * 28 27 26 51 51 H 1.08998 * 110.02852 * 238.56228 * 29 25 23 52 52 H 1.08999 * 110.03303 * 359.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 8 4.1449 -0.0204 -0.4445 7 7 4.2149 -1.1804 -2.3343 8 6 5.6749 -1.0765 -2.3963 9 1 6.0066 -0.1028 -2.0357 10 6 6.1828 -1.3339 -3.8396 11 6 6.2245 -2.8818 -3.8832 12 7 6.6705 -3.2855 -2.5373 13 6 7.2911 -4.4648 -2.2225 14 1 7.5797 -4.6675 -1.2017 15 6 7.5496 -5.3997 -3.2155 16 7 7.1986 -5.1525 -4.4597 17 14 8.3968 -7.0082 -2.7862 18 1 8.6864 -7.0420 -1.3301 19 1 7.5094 -8.1451 -3.1404 20 1 9.6677 -7.1167 -3.5467 21 6 6.3379 -2.2125 -1.5889 22 7 2.0183 -0.6906 1.1962 23 6 2.1470 -0.0182 2.3572 24 8 1.8589 1.1586 2.4115 25 6 2.6553 -0.7271 3.5861 26 6 1.6863 -1.8607 3.9809 27 6 1.6901 -1.8402 5.5304 28 6 1.7578 -0.3267 5.8527 29 6 2.7011 0.2477 4.7757 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.7326 -1.6555 -3.0289 36 1 5.4821 -0.9410 -4.5763 37 1 7.1772 -0.9121 -3.9849 38 1 6.9357 -3.2211 -4.6363 39 1 5.2320 -3.2823 -4.0900 40 1 7.3796 -5.8056 -5.1537 41 1 7.2460 -1.8459 -1.1104 42 1 5.6441 -2.5855 -0.8355 43 1 2.2490 -1.6317 1.1526 44 1 3.6489 -1.1339 3.3980 45 1 0.6857 -1.6574 3.5993 46 1 2.0494 -2.8193 3.6103 47 1 2.5663 -2.3578 5.9207 48 1 0.7750 -2.2793 5.9277 49 1 2.1728 -0.1668 6.8479 50 1 0.7688 0.1247 5.7737 51 1 3.7168 0.3133 5.1657 52 1 2.3562 1.2336 4.4641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316994875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:49 Heat of formation + Delta-G solvation = -68.895912 kcal Electronic energy + Delta-G solvation = -30175.539698 eV Core-core repulsion = 26174.620029 eV Total energy + Delta-G solvation = -4000.919669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.40793 -39.55947 -37.64657 -37.07255 -35.57743 -33.83293 -32.13211 -31.61690 -29.41948 -29.05211 -28.78122 -28.27755 -26.90585 -24.52039 -23.02723 -21.46813 -20.87792 -20.38527 -20.23604 -19.79065 -19.56944 -17.56984 -17.16257 -16.72262 -16.47650 -15.87806 -15.74171 -14.97992 -14.77678 -14.76630 -14.58390 -14.06064 -13.85332 -13.61198 -13.43021 -13.29779 -13.02894 -12.74688 -12.64850 -12.20610 -12.06488 -11.90384 -11.82458 -11.65992 -11.46389 -11.32611 -11.26406 -11.14480 -11.09629 -10.96719 -10.93660 -10.79503 -10.66428 -10.44429 -10.13842 -9.93853 -9.67210 -9.66894 -9.55587 -9.04653 -8.76788 -8.63754 -6.88854 -5.71355 -3.12337 2.72183 2.83840 3.18415 3.35524 3.39268 3.42090 3.44116 4.29609 4.40197 4.44782 4.49527 4.60228 4.77219 4.99773 5.03717 5.20327 5.22607 5.24789 5.29738 5.31135 5.35878 5.40473 5.40857 5.43981 5.45941 5.47347 5.54869 5.62161 5.71406 5.72117 5.82964 5.84676 5.92396 5.98221 6.04825 6.11196 6.20385 6.23350 6.32857 6.45070 6.51536 6.53132 6.67798 7.02234 7.37572 7.52288 7.57691 7.75230 7.81402 8.29420 8.29520 8.47152 9.16908 9.77606 10.41953 11.32941 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011982 B = 0.002718 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.203193 B =10300.236867 C =11760.685234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.507 3.493 6 O -0.536 6.536 7 N -0.712 5.712 8 C 0.132 3.868 9 H 0.086 0.914 10 C -0.153 4.153 11 C 0.152 3.848 12 N -0.603 5.603 13 C -0.220 4.220 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.924 5.924 17 Si 0.914 3.086 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.130 3.870 22 N -0.713 5.713 23 C 0.529 3.471 24 O -0.545 6.545 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.119 4.119 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.010 0.990 40 H 0.251 0.749 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.398 0.602 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.066 0.934 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.809 8.287 10.613 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.113 0.887 4 C -0.194 4.194 5 C 0.293 3.707 6 O -0.413 6.413 7 N -0.363 5.363 8 C 0.027 3.973 9 H 0.104 0.896 10 C -0.192 4.192 11 C 0.027 3.973 12 N -0.330 5.330 13 C -0.348 4.348 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.573 5.573 17 Si 0.745 3.255 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.003 3.997 22 N -0.363 5.363 23 C 0.316 3.684 24 O -0.422 6.422 25 C -0.137 4.137 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.161 4.161 29 C -0.156 4.156 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.234 0.766 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.232 0.768 44 H 0.117 0.883 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.484 9.383 11.174 20.559 hybrid contribution 0.364 -1.727 -0.348 1.799 sum -14.121 7.656 10.826 19.370 Atomic orbital electron populations 1.22191 0.94990 1.02185 1.02732 1.20621 0.93159 0.98060 0.82773 0.88711 1.22066 0.93555 1.03600 1.00158 1.20488 0.89591 0.78880 0.81786 1.90729 1.70159 1.42339 1.38036 1.46028 1.07956 1.55875 1.26393 1.21969 0.78745 0.98944 0.97671 0.89634 1.23334 1.00577 1.01582 0.93740 1.21942 0.98994 0.86518 0.89851 1.44524 1.68972 1.16283 1.03200 1.19131 1.29726 0.91894 0.94045 0.90502 1.24772 1.01567 0.98879 0.95523 1.69786 1.52712 1.34974 0.99802 0.85997 0.78860 0.83171 0.77477 1.20537 1.21783 1.21712 1.21658 0.96386 0.88913 0.92771 1.45846 1.67360 1.13749 1.09366 1.20409 0.76631 0.86987 0.84392 1.90630 1.50645 1.16048 1.84869 1.21953 1.00994 0.96999 0.93710 1.22363 0.98982 0.97369 0.96536 1.22510 1.01896 0.96683 0.95066 1.22360 0.99855 0.95332 0.98560 1.22152 1.00054 1.00070 0.93373 0.92369 0.91833 0.91526 0.88384 0.87530 0.76646 0.91758 0.90673 0.87432 0.97185 0.93791 0.95284 0.95812 0.76826 0.88264 0.91271 0.90830 0.91210 0.91452 0.91619 0.91677 0.91512 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.48 37.16 0.35 -1.06 16 2 C 0.16 1.74 2.13 -67.93 -0.15 1.59 16 3 H 0.09 1.32 7.39 -51.93 -0.38 0.94 16 4 C -0.15 -1.47 5.24 -27.88 -0.15 -1.62 16 5 C 0.51 7.15 7.69 -10.98 -0.08 7.07 16 6 O -0.54 -9.60 15.08 5.56 0.08 -9.52 16 7 N -0.71 -10.35 5.11 -52.03 -0.27 -10.62 16 8 C 0.13 2.29 3.25 -66.09 -0.21 2.08 16 9 H 0.09 1.51 7.69 -51.93 -0.40 1.11 16 10 C -0.15 -2.69 6.64 -24.58 -0.16 -2.86 16 11 C 0.15 3.45 5.87 -2.53 -0.01 3.43 16 12 N -0.60 -15.00 3.39 -170.08 -0.58 -15.58 16 13 C -0.22 -6.02 10.27 -15.06 -0.15 -6.17 16 14 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 15 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 16 N -0.92 -26.11 10.09 55.49 0.56 -25.55 16 17 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.13 2.75 6.98 -3.06 -0.02 2.73 16 22 N -0.71 -8.17 4.16 -53.81 -0.22 -8.39 16 23 C 0.53 6.99 6.96 -10.98 -0.08 6.92 16 24 O -0.54 -9.02 14.87 5.55 0.08 -8.93 16 25 C -0.12 -1.23 3.29 -90.65 -0.30 -1.53 16 26 C -0.11 -0.97 6.30 -25.03 -0.16 -1.12 16 27 C -0.12 -0.95 6.91 -24.70 -0.17 -1.12 16 28 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 29 C -0.12 -1.25 6.40 -25.61 -0.16 -1.41 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 5.13 8.62 -40.82 -0.35 4.78 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.11 2.80 5.87 -51.93 -0.30 2.50 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.02 0.53 8.04 -51.93 -0.42 0.11 16 43 H 0.40 3.99 8.59 -40.82 -0.35 3.64 16 44 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 52 H 0.09 1.13 6.39 -51.93 -0.33 0.80 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -33.38 410.19 -10.17 -43.55 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -9.26 Total: 6.91 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.73 Total: 5.27 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.51 Total: -60.14 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.17 Total: -18.45 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.38 -10.17 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316994875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.350 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds