Wall clock time and date at job start Tue Mar 31 2020 20:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47076 * 2 1 4 4 C 1.53000 * 109.46816 * 240.00281 * 2 1 3 5 5 C 1.53005 * 109.46632 * 175.00226 * 4 2 1 6 6 N 1.46505 * 109.46784 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00115 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99620 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 N 1.30259 * 125.61892 * 90.02396 * 11 10 9 13 13 C 1.34476 * 108.70058 * 179.97438 * 12 11 10 14 14 C 1.34328 * 107.66854 * 359.97438 * 13 12 11 15 15 C 1.50699 * 126.43977 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47171 * 60.00318 * 15 14 13 17 17 C 1.53001 * 109.46880 * 180.02562 * 15 14 13 18 18 C 1.53004 * 109.47448 * 300.00385 * 15 14 13 19 19 O 1.33961 * 125.62239 * 269.71520 * 11 10 9 20 20 N 1.46497 * 109.47231 * 120.00387 * 2 1 3 21 21 C 1.36938 * 119.99735 * 275.00118 * 20 2 1 22 22 H 1.08006 * 120.00352 * 359.97438 * 21 20 2 23 23 C 1.38810 * 120.00035 * 179.97438 * 21 20 2 24 24 N 1.31624 * 120.00083 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00120 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46791 * 60.00267 * 25 23 21 27 27 H 1.48500 * 109.47187 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47446 * 299.99964 * 25 23 21 29 29 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47306 * 300.00282 * 1 2 3 31 31 H 1.09001 * 109.47240 * 59.99331 * 1 2 3 32 32 H 1.08992 * 109.47399 * 54.99947 * 4 2 1 33 33 H 1.09001 * 109.47194 * 294.99774 * 4 2 1 34 34 H 1.09002 * 109.47193 * 60.00246 * 5 4 2 35 35 H 1.08992 * 109.47333 * 299.99245 * 5 4 2 36 36 H 0.97003 * 120.00244 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.47120 * 59.99760 * 9 7 6 38 38 H 1.08998 * 109.46862 * 300.00562 * 9 7 6 39 39 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 40 40 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 41 41 H 1.08003 * 126.16212 * 180.02562 * 13 12 11 42 42 H 1.09008 * 109.47260 * 60.00046 * 16 15 14 43 43 H 1.08998 * 109.47294 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.47431 * 300.00304 * 16 15 14 45 45 H 1.08997 * 109.47289 * 60.00302 * 17 15 14 46 46 H 1.08998 * 109.47132 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.46938 * 300.00342 * 17 15 14 48 48 H 1.09002 * 109.46843 * 59.99943 * 18 15 14 49 49 H 1.08992 * 109.47216 * 180.02562 * 18 15 14 50 50 H 1.09006 * 109.46963 * 300.00085 * 18 15 14 51 51 H 0.96995 * 120.00608 * 95.00002 * 20 2 1 52 52 H 0.97003 * 119.99944 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3137 6 7 4.0531 -1.3044 -2.5096 7 6 5.3740 -1.3398 -2.7753 8 8 6.1582 -0.7992 -2.0245 9 6 5.8763 -2.0502 -4.0057 10 6 7.4011 -1.9424 -4.0701 11 6 7.9035 -2.6534 -5.3003 12 7 8.0699 -2.1132 -6.4738 13 6 8.5312 -3.0519 -7.3190 14 6 8.6477 -4.1991 -6.6300 15 6 9.1288 -5.5218 -7.1686 16 6 10.5569 -5.3688 -7.6956 17 6 9.1064 -6.5661 -6.0506 18 6 8.2110 -5.9736 -8.3064 19 8 8.2580 -3.9435 -5.3657 20 7 2.0183 -0.6907 1.1961 21 6 2.1490 -0.0076 2.3757 22 1 1.8925 1.0405 2.4242 23 6 2.6113 -0.6621 3.5092 24 7 2.9234 -1.9394 3.4503 25 14 2.7903 0.2699 5.1182 26 1 1.4683 0.8076 5.5284 27 1 3.2980 -0.6488 6.1686 28 1 3.7463 1.3917 4.9368 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -0.2617 -2.1369 33 1 1.7515 -1.7715 -1.2057 34 1 3.9993 -1.0729 -0.4260 35 1 3.8531 0.4369 -1.3574 36 1 3.4258 -1.7364 -3.1103 37 1 5.4414 -1.5909 -4.8934 38 1 5.5881 -3.1005 -3.9619 39 1 7.8357 -2.4020 -3.1824 40 1 7.6896 -0.8922 -4.1137 41 1 8.7666 -2.9089 -8.3634 42 1 11.2109 -5.0470 -6.8850 43 1 10.9051 -6.3256 -8.0847 44 1 10.5726 -4.6249 -8.4920 45 1 8.0888 -6.6751 -5.6755 46 1 9.4548 -7.5227 -6.4400 47 1 9.7600 -6.2444 -5.2398 48 1 8.2267 -5.2296 -9.1029 49 1 8.5588 -6.9304 -8.6955 50 1 7.1935 -6.0826 -7.9309 51 1 2.2490 -1.6318 1.1526 52 1 3.2467 -2.3967 4.2424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317396142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:53 Heat of formation + Delta-G solvation = -58.909906 kcal Electronic energy + Delta-G solvation = -28330.077502 eV Core-core repulsion = 24329.590859 eV Total energy + Delta-G solvation = -4000.486643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.42273 -40.79331 -38.18846 -38.01372 -35.92783 -35.79546 -34.71812 -34.10494 -31.20505 -30.21474 -29.32590 -28.28220 -28.19786 -26.42100 -25.70315 -23.85131 -23.69733 -22.30363 -21.74631 -20.98456 -20.63076 -19.27502 -18.46201 -17.76535 -17.53190 -17.05915 -16.84166 -16.65721 -16.14328 -15.84087 -15.42288 -15.31706 -15.00788 -14.98337 -14.83811 -14.36117 -14.27912 -14.07604 -13.94322 -13.54017 -13.41397 -13.22771 -13.18550 -13.13413 -12.78747 -12.63748 -12.62755 -12.60954 -12.35031 -12.30751 -12.23728 -12.19001 -12.10409 -12.01958 -11.91855 -11.63870 -11.58545 -11.43595 -10.98584 -10.88603 -10.06977 -9.65917 -8.96608 -7.91835 -5.18363 0.40369 1.46095 1.49105 1.54481 1.55687 1.62593 1.64681 2.23789 2.57704 3.02139 3.42071 3.55989 3.67297 3.79765 3.92403 3.93440 3.95701 3.97927 4.03759 4.15917 4.20309 4.26370 4.39890 4.47547 4.61197 4.68468 4.70658 4.71970 4.76539 4.79535 4.82083 4.85141 4.90895 4.91559 4.94811 5.01494 5.04494 5.07551 5.12550 5.24572 5.25400 5.30548 5.34746 5.36602 5.41412 5.48687 5.54914 5.62878 6.31197 6.58127 6.71496 7.28550 7.37167 8.15605 8.36744 9.31419 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.001705 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.162646 B =16417.682983 C =17003.337410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.042 0.958 4 C -0.116 4.116 5 C 0.132 3.868 6 N -0.713 5.713 7 C 0.508 3.492 8 O -0.588 6.588 9 C -0.120 4.120 10 C -0.004 4.004 11 C 0.182 3.818 12 N -0.499 5.499 13 C -0.053 4.053 14 C -0.033 4.033 15 C 0.017 3.983 16 C -0.139 4.139 17 C -0.146 4.146 18 C -0.137 4.137 19 O -0.207 6.207 20 N -0.734 5.734 21 C -0.234 4.234 22 H 0.074 0.926 23 C -0.079 4.079 24 N -0.969 5.969 25 Si 0.967 3.033 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.282 1.282 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.051 0.949 36 H 0.418 0.582 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.203 0.797 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.052 0.948 51 H 0.372 0.628 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 -9.079 -30.381 33.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.060 0.940 4 C -0.154 4.154 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.296 3.704 8 O -0.469 6.469 9 C -0.160 4.160 10 C -0.043 4.043 11 C -0.024 4.024 12 N -0.229 5.229 13 C -0.191 4.191 14 C -0.086 4.086 15 C 0.016 3.984 16 C -0.196 4.196 17 C -0.203 4.203 18 C -0.194 4.194 19 O -0.094 6.094 20 N -0.375 5.375 21 C -0.366 4.366 22 H 0.091 0.909 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.796 3.204 26 H -0.203 1.203 27 H -0.224 1.224 28 H -0.209 1.209 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.255 0.745 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.071 0.929 51 H 0.204 0.796 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.692 -7.937 -29.824 32.348 hybrid contribution 0.156 -0.606 1.473 1.600 sum 9.848 -8.543 -28.351 31.205 Atomic orbital electron populations 1.22259 0.97167 1.01026 1.00821 1.20473 0.93141 0.95225 0.85764 0.93998 1.21909 0.92579 1.02064 0.98834 1.21101 0.95296 0.96169 0.86673 1.45899 1.07481 1.56405 1.26742 1.21041 0.82356 0.79787 0.87231 1.90742 1.56490 1.47978 1.51666 1.21542 0.94633 1.03469 0.96382 1.19719 0.94870 1.00246 0.89455 1.26243 1.00312 0.79112 0.96752 1.70449 1.17699 1.33781 1.00969 1.23378 1.05370 0.88300 1.02042 1.24045 1.03401 0.99989 0.81213 1.19350 0.97111 0.85908 0.96023 1.21946 0.92410 1.04027 1.01180 1.21889 1.02112 0.98955 0.97327 1.21937 0.98328 1.02940 0.96222 1.84411 1.63246 1.29867 1.31829 1.42632 1.78381 1.10224 1.06267 1.19572 1.34456 0.94080 0.88500 0.90854 1.25493 1.03373 0.96896 1.01341 1.69801 1.52906 1.10095 1.29256 0.85304 0.77909 0.77304 0.79841 1.20289 1.22416 1.20870 0.93628 0.94959 0.90602 0.87670 0.90956 0.94583 0.93095 0.74483 0.85882 0.86371 0.88757 0.87545 0.78047 0.93304 0.89183 0.91149 0.92931 0.89516 0.93309 0.91144 0.89268 0.92918 0.79636 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.49 71.98 0.68 -4.29 16 2 C 0.16 6.01 2.89 44.99 0.13 6.14 16 3 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 4 C -0.12 -3.22 4.87 30.60 0.15 -3.07 16 5 C 0.13 4.28 5.56 86.38 0.48 4.76 16 6 N -0.71 -17.36 5.56 -463.05 -2.57 -19.94 16 7 C 0.51 13.82 7.83 87.66 0.69 14.51 16 8 O -0.59 -22.34 15.98 -3.04 -0.05 -22.39 16 9 C -0.12 -2.17 5.68 29.85 0.17 -2.00 16 10 C 0.00 -0.09 5.13 29.85 0.15 0.06 16 11 C 0.18 4.08 7.60 88.34 0.67 4.75 16 12 N -0.50 -11.65 11.29 -303.83 -3.43 -15.08 16 13 C -0.05 -0.96 11.24 83.39 0.94 -0.02 16 14 C -0.03 -0.58 5.70 24.79 0.14 -0.44 16 15 C 0.02 0.18 0.93 -52.93 -0.05 0.13 16 16 C -0.14 -1.09 8.35 71.98 0.60 -0.49 16 17 C -0.15 -1.66 8.06 71.98 0.58 -1.08 16 18 C -0.14 -0.99 8.35 71.98 0.60 -0.39 16 19 O -0.21 -4.54 10.24 -3.63 -0.04 -4.57 16 20 N -0.73 -36.32 4.57 -322.95 -1.48 -37.80 16 21 C -0.23 -13.09 9.93 84.03 0.83 -12.25 16 22 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 24 N -0.97 -60.50 13.06 21.65 0.28 -60.21 16 25 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 28 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.54 7.75 -2.39 -0.02 1.52 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.42 6.62 8.47 -92.71 -0.79 5.84 16 37 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 40 H 0.11 2.44 8.10 -2.39 -0.02 2.42 16 41 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 42 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.07 0.46 8.02 -2.39 -0.02 0.44 16 45 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.07 0.42 8.02 -2.39 -0.02 0.40 16 49 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 51 H 0.37 19.87 7.80 -92.71 -0.72 19.15 16 52 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -77.48 429.35 1.37 -76.11 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -0.61 Total: 32.24 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 7.24 Total: 2.13 kcal Atomic # 7 Polarization: -125.84 SS G_CDS: -7.20 Total: -133.03 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.09 Total: -26.96 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -77.48 1.37 -76.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317396142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.198 kcal (2) G-P(sol) polarization free energy of solvation -77.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds