Wall clock time and date at job start Tue Mar 31 2020 20:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47346 * 2 1 4 4 C 1.53000 * 109.47036 * 120.00143 * 2 1 3 5 5 C 1.53005 * 109.46632 * 184.99902 * 4 2 1 6 6 N 1.46505 * 109.46784 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00115 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99620 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 N 1.30259 * 125.61892 * 90.02396 * 11 10 9 13 13 C 1.34476 * 108.70058 * 179.97438 * 12 11 10 14 14 C 1.34328 * 107.66854 * 359.97438 * 13 12 11 15 15 C 1.50699 * 126.43977 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47171 * 60.00318 * 15 14 13 17 17 C 1.53001 * 109.46880 * 180.02562 * 15 14 13 18 18 C 1.53004 * 109.47448 * 300.00385 * 15 14 13 19 19 O 1.33961 * 125.62239 * 269.71520 * 11 10 9 20 20 N 1.46502 * 109.46969 * 239.99964 * 2 1 3 21 21 C 1.36936 * 120.00204 * 85.00190 * 20 2 1 22 22 H 1.08004 * 119.99794 * 359.97438 * 21 20 2 23 23 C 1.38812 * 119.99914 * 180.02562 * 21 20 2 24 24 N 1.31620 * 120.00018 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99603 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47231 * 59.99644 * 25 23 21 27 27 H 1.48507 * 109.47040 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47139 * 299.99494 * 25 23 21 29 29 H 1.09001 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47181 * 300.00074 * 1 2 3 31 31 H 1.09000 * 109.47599 * 59.99740 * 1 2 3 32 32 H 1.08992 * 109.47399 * 64.99623 * 4 2 1 33 33 H 1.09001 * 109.47194 * 304.99450 * 4 2 1 34 34 H 1.09002 * 109.47193 * 60.00246 * 5 4 2 35 35 H 1.08992 * 109.47333 * 299.99245 * 5 4 2 36 36 H 0.97003 * 120.00244 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.47120 * 59.99760 * 9 7 6 38 38 H 1.08998 * 109.46862 * 300.00562 * 9 7 6 39 39 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 40 40 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 41 41 H 1.08003 * 126.16212 * 180.02562 * 13 12 11 42 42 H 1.09008 * 109.47260 * 60.00046 * 16 15 14 43 43 H 1.08998 * 109.47294 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.47431 * 300.00304 * 16 15 14 45 45 H 1.08997 * 109.47289 * 60.00302 * 17 15 14 46 46 H 1.08998 * 109.47132 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.46938 * 300.00342 * 17 15 14 48 48 H 1.09002 * 109.46843 * 59.99943 * 18 15 14 49 49 H 1.08992 * 109.47216 * 180.02562 * 18 15 14 50 50 H 1.09006 * 109.46963 * 300.00085 * 18 15 14 51 51 H 0.97006 * 119.99493 * 265.00153 * 20 2 1 52 52 H 0.97005 * 119.99558 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0531 -1.3034 2.5101 7 6 5.3741 -1.3396 2.7753 8 8 6.1585 -0.8012 2.0231 9 6 5.8765 -2.0499 4.0057 10 6 7.4013 -1.9419 4.0702 11 6 7.9035 -2.6517 5.3010 12 7 8.2439 -3.9074 5.3668 13 6 8.6409 -4.1812 6.6221 14 6 8.5367 -3.0499 7.3387 15 6 8.8733 -2.8802 8.7978 16 6 10.3488 -3.2161 9.0231 17 6 8.6095 -1.4326 9.2170 18 6 8.0028 -3.8198 9.6347 19 8 8.0791 -2.0941 6.5063 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0075 -2.3758 22 1 1.8919 1.0403 -2.4244 23 6 2.6113 -0.6621 -3.5093 24 7 2.9242 -1.9392 -3.4501 25 14 2.7890 0.2696 -5.1185 26 1 3.7443 1.3920 -4.9378 27 1 3.2981 -0.6488 -6.1687 28 1 1.4665 0.8063 -5.5284 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4370 1.3573 35 1 3.9994 -1.0729 0.4260 36 1 3.4258 -1.7344 3.1115 37 1 5.5878 -3.1001 3.9623 38 1 5.4421 -1.5902 4.8934 39 1 7.6896 -0.8916 4.1139 40 1 7.8359 -2.4014 3.1825 41 1 8.9828 -5.1382 6.9879 42 1 10.9691 -2.5467 8.4269 43 1 10.5924 -3.0930 10.0784 44 1 10.5364 -4.2475 8.7245 45 1 7.5582 -1.1937 9.0566 46 1 8.8534 -1.3098 10.2722 47 1 9.2294 -0.7630 8.6208 48 1 8.1904 -4.8512 9.3361 49 1 8.2460 -3.6967 10.6900 50 1 6.9515 -3.5805 9.4742 51 1 2.2489 -1.6319 -1.1526 52 1 3.2476 -2.3965 -4.2422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317396145.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:57 Heat of formation + Delta-G solvation = -34.343990 kcal Electronic energy + Delta-G solvation = -28298.114646 eV Core-core repulsion = 24298.693260 eV Total energy + Delta-G solvation = -3999.421385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.64264 -39.62098 -37.56164 -36.62512 -35.05723 -34.39111 -33.81415 -32.23049 -29.78214 -28.94088 -28.07456 -27.85452 -27.80450 -25.44035 -23.76248 -23.05995 -22.46368 -21.42428 -20.49296 -20.03633 -19.59740 -17.61616 -17.19081 -16.97367 -16.61579 -15.97452 -15.66664 -15.42335 -14.97986 -14.71346 -14.55369 -14.24222 -14.05376 -13.74138 -13.54641 -13.50146 -13.18874 -12.91286 -12.75858 -12.72891 -12.52123 -12.44026 -12.24129 -12.07820 -12.01872 -11.60654 -11.53418 -11.50842 -11.47466 -11.40569 -11.05155 -10.89153 -10.71628 -10.66605 -10.62043 -10.28677 -10.02183 -9.70916 -9.60485 -8.92837 -8.89631 -8.79885 -6.92561 -5.72105 -3.00877 1.16475 2.29758 2.43019 2.74139 3.28212 3.47949 3.52512 3.53250 3.81099 4.11262 4.30475 4.34284 4.56148 4.60777 4.63500 4.75372 4.85772 4.94226 5.04631 5.05146 5.20410 5.22951 5.26326 5.31325 5.33294 5.34536 5.40994 5.47574 5.52286 5.57342 5.58681 5.69770 5.70394 5.70534 5.78454 5.84823 5.89565 6.06782 6.08333 6.18998 6.35922 6.41124 6.49326 6.68508 6.72357 6.87990 7.07628 7.51329 7.62398 7.74094 8.34215 8.46201 9.57470 10.14100 10.48671 11.50404 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021319 B = 0.001655 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.078182 B =16911.251352 C =17603.159128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.728 5.728 7 C 0.511 3.489 8 O -0.536 6.536 9 C -0.137 4.137 10 C -0.008 4.008 11 C 0.193 3.807 12 N -0.477 5.477 13 C -0.039 4.039 14 C -0.038 4.038 15 C 0.019 3.981 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.140 4.140 19 O -0.195 6.195 20 N -0.723 5.723 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.180 0.820 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.069 0.931 50 H 0.060 0.940 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 -3.081 30.962 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.002 4.002 6 N -0.379 5.379 7 C 0.296 3.704 8 O -0.413 6.413 9 C -0.178 4.178 10 C -0.046 4.046 11 C -0.014 4.014 12 N -0.206 5.206 13 C -0.178 4.178 14 C -0.091 4.091 15 C 0.018 3.982 16 C -0.198 4.198 17 C -0.202 4.202 18 C -0.197 4.197 19 O -0.082 6.082 20 N -0.365 5.365 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.230 0.770 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.134 0.866 41 H 0.197 0.803 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.079 0.921 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.054 -2.929 29.739 31.529 hybrid contribution -0.191 0.225 -0.099 0.311 sum 9.864 -2.705 29.640 31.355 Atomic orbital electron populations 1.22426 0.99169 1.00814 0.99934 1.20154 0.91862 0.95583 0.86060 0.93305 1.22059 0.93931 1.01800 0.99310 1.21475 0.94407 0.97165 0.87105 1.46110 1.07134 1.57042 1.27580 1.20329 0.82663 0.80554 0.86814 1.90759 1.55168 1.45774 1.49599 1.21620 0.95360 1.03071 0.97724 1.19822 0.94326 1.01089 0.89369 1.26300 1.00153 0.88629 0.86286 1.70493 1.15617 1.13687 1.20812 1.22983 1.05787 0.99779 0.89208 1.23361 1.04149 0.87624 0.93998 1.19123 0.96724 0.97830 0.84533 1.21937 0.93101 1.02283 1.02457 1.21875 1.02607 0.94024 1.01717 1.21936 0.99550 0.98832 0.99420 1.84395 1.63935 1.39811 1.20093 1.42441 1.78103 1.10637 1.05330 1.19177 1.36672 0.93824 0.87360 0.91270 1.24727 1.02147 0.95960 0.98040 1.69646 1.50811 1.08643 1.28962 0.86291 0.77699 0.78659 0.83671 1.21270 1.21755 1.21372 0.93538 0.94613 0.92734 0.91601 0.91974 0.91809 0.89633 0.76999 0.88029 0.88634 0.88052 0.86553 0.80335 0.92074 0.91157 0.91850 0.91993 0.91572 0.92009 0.91850 0.91162 0.92054 0.78287 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.31 2.89 -67.93 -0.20 3.11 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.12 1.97 5.56 -4.04 -0.02 1.95 16 6 N -0.73 -9.30 5.56 -60.29 -0.33 -9.63 16 7 C 0.51 7.01 7.83 -10.99 -0.09 6.92 16 8 O -0.54 -9.81 15.98 5.56 0.09 -9.72 16 9 C -0.14 -1.32 5.68 -27.89 -0.16 -1.48 16 10 C -0.01 -0.08 5.13 -27.88 -0.14 -0.22 16 11 C 0.19 2.18 7.60 -12.94 -0.10 2.08 16 12 N -0.48 -5.88 11.29 -11.10 -0.13 -6.01 16 13 C -0.04 -0.38 11.24 -17.77 -0.20 -0.58 16 14 C -0.04 -0.34 5.70 -35.69 -0.20 -0.55 16 15 C 0.02 0.11 0.93 -155.66 -0.15 -0.03 16 16 C -0.14 -0.67 8.35 37.15 0.31 -0.36 16 17 C -0.14 -0.83 8.06 37.16 0.30 -0.53 16 18 C -0.14 -0.65 8.35 37.16 0.31 -0.34 16 19 O -0.20 -2.10 10.24 5.39 0.06 -2.05 16 20 N -0.72 -17.69 4.57 -53.42 -0.24 -17.94 16 21 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 25 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.76 7.75 -51.93 -0.40 1.36 16 36 H 0.40 3.70 8.47 -40.82 -0.35 3.36 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 40 H 0.12 1.34 8.10 -51.93 -0.42 0.92 16 41 H 0.18 1.30 8.06 -52.48 -0.42 0.87 16 42 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.06 0.28 8.02 -51.93 -0.42 -0.14 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.27 8.02 -51.93 -0.42 -0.15 16 49 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 52 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 429.35 15.07 6.47 6.47 Total: -1.00 -34.40 429.35 -8.22 -42.62 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -9.47 Total: 8.05 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.36 Total: -1.86 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.02 Total: -61.23 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.14 Total: -11.77 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -34.40 -8.22 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317396145.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.272 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds