Wall clock time and date at job start Tue Mar 31 2020 20:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47346 * 2 1 4 4 C 1.53000 * 109.47036 * 120.00143 * 2 1 3 5 5 C 1.53005 * 109.46632 * 184.99902 * 4 2 1 6 6 N 1.46505 * 109.46784 * 179.97438 * 5 4 2 7 7 C 1.34777 * 120.00115 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99620 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 N 1.30259 * 125.61892 * 90.02396 * 11 10 9 13 13 C 1.34476 * 108.70058 * 179.97438 * 12 11 10 14 14 C 1.34328 * 107.66854 * 359.97438 * 13 12 11 15 15 C 1.50699 * 126.43977 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47171 * 60.00318 * 15 14 13 17 17 C 1.53001 * 109.46880 * 180.02562 * 15 14 13 18 18 C 1.53004 * 109.47448 * 300.00385 * 15 14 13 19 19 O 1.33961 * 125.62239 * 269.71520 * 11 10 9 20 20 N 1.46502 * 109.46969 * 239.99964 * 2 1 3 21 21 C 1.36936 * 120.00204 * 85.00190 * 20 2 1 22 22 H 1.08004 * 119.99794 * 359.97438 * 21 20 2 23 23 C 1.38812 * 119.99914 * 180.02562 * 21 20 2 24 24 N 1.31620 * 120.00018 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99603 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47231 * 59.99644 * 25 23 21 27 27 H 1.48507 * 109.47040 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47139 * 299.99494 * 25 23 21 29 29 H 1.09001 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47181 * 300.00074 * 1 2 3 31 31 H 1.09000 * 109.47599 * 59.99740 * 1 2 3 32 32 H 1.08992 * 109.47399 * 64.99623 * 4 2 1 33 33 H 1.09001 * 109.47194 * 304.99450 * 4 2 1 34 34 H 1.09002 * 109.47193 * 60.00246 * 5 4 2 35 35 H 1.08992 * 109.47333 * 299.99245 * 5 4 2 36 36 H 0.97003 * 120.00244 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.47120 * 59.99760 * 9 7 6 38 38 H 1.08998 * 109.46862 * 300.00562 * 9 7 6 39 39 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 40 40 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 41 41 H 1.08003 * 126.16212 * 180.02562 * 13 12 11 42 42 H 1.09008 * 109.47260 * 60.00046 * 16 15 14 43 43 H 1.08998 * 109.47294 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.47431 * 300.00304 * 16 15 14 45 45 H 1.08997 * 109.47289 * 60.00302 * 17 15 14 46 46 H 1.08998 * 109.47132 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.46938 * 300.00342 * 17 15 14 48 48 H 1.09002 * 109.46843 * 59.99943 * 18 15 14 49 49 H 1.08992 * 109.47216 * 180.02562 * 18 15 14 50 50 H 1.09006 * 109.46963 * 300.00085 * 18 15 14 51 51 H 0.97006 * 119.99493 * 265.00153 * 20 2 1 52 52 H 0.97005 * 119.99558 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0531 -1.3034 2.5101 7 6 5.3741 -1.3396 2.7753 8 8 6.1585 -0.8012 2.0231 9 6 5.8765 -2.0499 4.0057 10 6 7.4013 -1.9419 4.0702 11 6 7.9035 -2.6517 5.3010 12 7 8.2439 -3.9074 5.3668 13 6 8.6409 -4.1812 6.6221 14 6 8.5367 -3.0499 7.3387 15 6 8.8733 -2.8802 8.7978 16 6 10.3488 -3.2161 9.0231 17 6 8.6095 -1.4326 9.2170 18 6 8.0028 -3.8198 9.6347 19 8 8.0791 -2.0941 6.5063 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0075 -2.3758 22 1 1.8919 1.0403 -2.4244 23 6 2.6113 -0.6621 -3.5093 24 7 2.9242 -1.9392 -3.4501 25 14 2.7890 0.2696 -5.1185 26 1 3.7443 1.3920 -4.9378 27 1 3.2981 -0.6488 -6.1687 28 1 1.4665 0.8063 -5.5284 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4370 1.3573 35 1 3.9994 -1.0729 0.4260 36 1 3.4258 -1.7344 3.1115 37 1 5.5878 -3.1001 3.9623 38 1 5.4421 -1.5902 4.8934 39 1 7.6896 -0.8916 4.1139 40 1 7.8359 -2.4014 3.1825 41 1 8.9828 -5.1382 6.9879 42 1 10.9691 -2.5467 8.4269 43 1 10.5924 -3.0930 10.0784 44 1 10.5364 -4.2475 8.7245 45 1 7.5582 -1.1937 9.0566 46 1 8.8534 -1.3098 10.2722 47 1 9.2294 -0.7630 8.6208 48 1 8.1904 -4.8512 9.3361 49 1 8.2460 -3.6967 10.6900 50 1 6.9515 -3.5805 9.4742 51 1 2.2489 -1.6319 -1.1526 52 1 3.2476 -2.3965 -4.2422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317396145.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:56 Heat of formation + Delta-G solvation = -58.900803 kcal Electronic energy + Delta-G solvation = -28299.179509 eV Core-core repulsion = 24298.693260 eV Total energy + Delta-G solvation = -4000.486249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.42276 -40.79258 -38.18626 -38.01046 -35.92672 -35.79559 -34.72037 -34.10410 -31.20448 -30.21453 -29.32524 -28.27318 -28.19675 -26.42162 -25.70191 -23.84989 -23.70110 -22.30396 -21.74474 -20.98324 -20.62690 -19.27334 -18.46044 -17.76566 -17.53663 -17.05964 -16.82120 -16.67058 -16.16382 -15.79035 -15.46106 -15.31765 -15.00500 -14.97875 -14.81965 -14.36341 -14.23957 -14.15786 -13.90545 -13.53907 -13.41219 -13.22859 -13.18209 -13.12334 -12.78542 -12.63157 -12.62865 -12.60346 -12.35188 -12.31216 -12.22579 -12.19746 -12.10250 -12.01374 -11.91312 -11.63765 -11.58356 -11.42513 -10.98476 -10.88481 -10.06890 -9.66276 -8.96539 -7.91624 -5.18253 0.40221 1.46115 1.49239 1.54347 1.54672 1.63184 1.64234 2.23935 2.57873 3.02452 3.42335 3.56303 3.67250 3.80350 3.92908 3.93584 3.95366 3.98077 4.03848 4.15901 4.20189 4.26994 4.39533 4.47457 4.61591 4.68591 4.70440 4.72606 4.77279 4.79534 4.82553 4.85831 4.91068 4.91629 4.95328 5.01608 5.04573 5.07835 5.12556 5.25030 5.25586 5.29994 5.34944 5.37342 5.41582 5.48788 5.54983 5.63043 6.31253 6.58209 6.72198 7.28638 7.37221 8.15793 8.36766 9.31632 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021319 B = 0.001655 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.078182 B =16911.251352 C =17603.159128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.042 0.958 4 C -0.116 4.116 5 C 0.132 3.868 6 N -0.713 5.713 7 C 0.508 3.492 8 O -0.588 6.588 9 C -0.120 4.120 10 C -0.004 4.004 11 C 0.183 3.817 12 N -0.504 5.504 13 C -0.055 4.055 14 C -0.031 4.031 15 C 0.017 3.983 16 C -0.139 4.139 17 C -0.144 4.144 18 C -0.138 4.138 19 O -0.203 6.203 20 N -0.735 5.735 21 C -0.234 4.234 22 H 0.074 0.926 23 C -0.079 4.079 24 N -0.969 5.969 25 Si 0.967 3.033 26 H -0.282 1.282 27 H -0.298 1.298 28 H -0.276 1.276 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.418 0.582 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.200 0.800 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.053 0.947 51 H 0.371 0.629 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.657 -2.827 34.175 35.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.061 0.939 4 C -0.154 4.154 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.296 3.704 8 O -0.469 6.469 9 C -0.160 4.160 10 C -0.043 4.043 11 C -0.023 4.023 12 N -0.234 5.234 13 C -0.193 4.193 14 C -0.085 4.085 15 C 0.017 3.983 16 C -0.196 4.196 17 C -0.202 4.202 18 C -0.195 4.195 19 O -0.090 6.090 20 N -0.375 5.375 21 C -0.367 4.367 22 H 0.092 0.908 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.797 3.203 26 H -0.209 1.209 27 H -0.224 1.224 28 H -0.202 1.202 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.255 0.745 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.217 0.783 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.108 0.892 50 H 0.072 0.928 51 H 0.203 0.797 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.156 -2.651 33.022 34.371 hybrid contribution 0.088 0.182 -0.962 0.983 sum 9.244 -2.469 32.060 33.458 Atomic orbital electron populations 1.22261 0.97172 1.01010 1.00833 1.20476 0.93138 0.95233 0.85751 0.93950 1.21910 0.92582 1.02037 0.98861 1.21101 0.95291 0.96194 0.86653 1.45899 1.07477 1.56478 1.26672 1.21040 0.82350 0.79714 0.87309 1.90742 1.56468 1.48071 1.51592 1.21543 0.94601 1.03417 0.96470 1.19717 0.94969 1.00847 0.88730 1.26231 1.00936 0.88555 0.86596 1.70462 1.16306 1.14301 1.22285 1.23367 1.06335 1.01055 0.88568 1.24043 1.02440 0.86969 0.95007 1.19351 0.97841 0.98456 0.82681 1.21951 0.91832 1.02252 1.03597 1.21883 1.01878 0.93580 1.02829 1.21941 0.98704 0.98597 1.00239 1.84397 1.64095 1.40385 1.20135 1.42642 1.78389 1.10218 1.06291 1.19575 1.34482 0.94101 0.88498 0.90813 1.25496 1.03352 0.96881 1.01357 1.69804 1.52868 1.10140 1.29253 0.85301 0.77914 0.77295 0.79829 1.20864 1.22444 1.20249 0.93670 0.90563 0.94959 0.91037 0.87593 0.92995 0.94680 0.74484 0.86646 0.85595 0.88076 0.88190 0.78297 0.93231 0.89113 0.91379 0.92740 0.89498 0.93182 0.91389 0.89197 0.92812 0.79665 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.49 71.98 0.68 -4.29 16 2 C 0.16 6.01 2.89 44.99 0.13 6.14 16 3 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 4 C -0.12 -3.22 4.87 30.60 0.15 -3.07 16 5 C 0.13 4.28 5.56 86.38 0.48 4.76 16 6 N -0.71 -17.35 5.56 -463.05 -2.57 -19.92 16 7 C 0.51 13.80 7.83 87.66 0.69 14.49 16 8 O -0.59 -22.33 15.98 -3.04 -0.05 -22.37 16 9 C -0.12 -2.17 5.68 29.85 0.17 -2.00 16 10 C 0.00 -0.09 5.13 29.85 0.15 0.07 16 11 C 0.18 4.11 7.60 88.34 0.67 4.78 16 12 N -0.50 -12.29 11.29 -303.83 -3.43 -15.72 16 13 C -0.06 -1.04 11.24 83.39 0.94 -0.10 16 14 C -0.03 -0.54 5.70 24.79 0.14 -0.39 16 15 C 0.02 0.18 0.93 -52.93 -0.05 0.13 16 16 C -0.14 -1.04 8.35 71.98 0.60 -0.44 16 17 C -0.14 -1.42 8.06 71.98 0.58 -0.84 16 18 C -0.14 -0.93 8.35 71.98 0.60 -0.33 16 19 O -0.20 -4.25 10.24 -3.63 -0.04 -4.29 16 20 N -0.73 -36.46 4.57 -322.94 -1.48 -37.94 16 21 C -0.23 -13.14 9.93 84.03 0.83 -12.31 16 22 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 24 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 25 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 26 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.03 1.51 7.75 -2.39 -0.02 1.49 16 36 H 0.42 6.61 8.47 -92.71 -0.79 5.83 16 37 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 2.12 8.10 -2.39 -0.02 2.10 16 40 H 0.10 2.45 8.10 -2.39 -0.02 2.43 16 41 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 42 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 0.45 8.02 -2.39 -0.02 0.43 16 45 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.41 8.02 -2.39 -0.02 0.39 16 49 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 51 H 0.37 19.97 7.80 -92.70 -0.72 19.25 16 52 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -78.07 429.35 1.37 -76.70 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.61 Total: 32.02 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 7.24 Total: 2.41 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -7.20 Total: -134.11 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.09 Total: -26.67 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -78.07 1.37 -76.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317396145.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.799 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds