Wall clock time and date at job start Tue Mar 31 2020 20:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47095 * 2 1 4 4 C 1.50697 * 109.46961 * 240.00043 * 2 1 3 5 5 O 1.21288 * 119.99741 * 262.25503 * 4 2 1 6 6 N 1.34767 * 120.00081 * 82.25843 * 4 2 1 7 7 C 1.46921 * 120.63363 * 4.56903 * 6 4 2 8 8 C 1.53624 * 108.54984 * 126.36692 * 7 6 4 9 9 C 1.53035 * 109.24004 * 54.85273 * 8 7 6 10 10 C 1.53000 * 109.45087 * 178.49888 * 9 8 7 11 11 C 1.52997 * 109.47491 * 295.06770 * 10 9 8 12 12 N 1.46498 * 109.47474 * 179.97438 * 11 10 9 13 13 C 1.36937 * 120.00227 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99895 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00151 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99762 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99921 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47524 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46900 * 120.00449 * 17 15 13 20 20 H 1.48501 * 109.47174 * 240.00169 * 17 15 13 21 21 C 1.53042 * 109.54354 * 298.51703 * 9 8 7 22 22 C 1.46929 * 120.63263 * 184.84251 * 6 4 2 23 23 C 1.53005 * 109.46919 * 120.00047 * 2 1 3 24 24 H 1.09000 * 110.21364 * 60.69840 * 23 2 1 25 25 C 1.54480 * 110.24315 * 298.77258 * 23 2 1 26 26 C 1.54858 * 101.65962 * 266.38947 * 25 23 2 27 27 C 1.51282 * 104.20815 * 335.19636 * 26 25 23 28 28 O 1.21286 * 124.94110 * 196.24543 * 27 26 25 29 29 N 1.34418 * 110.11616 * 16.26165 * 27 26 25 30 30 H 1.09000 * 109.47026 * 66.10247 * 1 2 3 31 31 H 1.09000 * 109.46979 * 306.10424 * 1 2 3 32 32 H 1.08992 * 109.47363 * 186.10311 * 1 2 3 33 33 H 1.09003 * 109.59184 * 246.20150 * 7 6 4 34 34 H 1.09002 * 109.58766 * 6.62716 * 7 6 4 35 35 H 1.09011 * 109.63129 * 294.86866 * 8 7 6 36 36 H 1.08991 * 109.46196 * 174.74317 * 8 7 6 37 37 H 1.09002 * 109.46283 * 58.54007 * 9 8 7 38 38 H 1.09008 * 109.47028 * 55.06883 * 10 9 8 39 39 H 1.09004 * 109.47286 * 175.06211 * 10 9 8 40 40 H 1.09001 * 109.46880 * 299.99441 * 11 10 9 41 41 H 1.09004 * 109.47313 * 59.99457 * 11 10 9 42 42 H 0.97007 * 119.99716 * 359.97438 * 12 11 10 43 43 H 0.97000 * 119.99510 * 179.97438 * 16 15 13 44 44 H 1.09003 * 109.49645 * 301.41175 * 21 9 8 45 45 H 1.08996 * 109.52474 * 181.33097 * 21 9 8 46 46 H 1.09004 * 109.58682 * 353.38200 * 22 6 4 47 47 H 1.09003 * 109.58700 * 113.65488 * 22 6 4 48 48 H 1.08999 * 110.97338 * 24.53301 * 25 23 2 49 49 H 1.08997 * 110.96941 * 148.30207 * 25 23 2 50 50 H 1.08997 * 110.46958 * 216.51992 * 26 25 23 51 51 H 1.09003 * 110.60385 * 93.93827 * 26 25 23 52 52 H 0.97007 * 124.34769 * 180.42791 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3679 -1.8740 -1.1643 6 7 2.1087 -0.0527 -2.4043 7 6 1.8015 1.3820 -2.4799 8 6 2.9881 2.1019 -3.1384 9 6 3.2852 1.4510 -4.4912 10 6 4.4424 2.1882 -5.1681 11 6 4.0147 3.6210 -5.4918 12 7 5.1230 4.3271 -6.1394 13 6 4.9719 5.6328 -6.5233 14 1 4.0356 6.1421 -6.3489 15 6 6.0223 6.3020 -7.1365 16 7 7.1632 5.6812 -7.3493 17 14 5.8159 8.0829 -7.6607 18 1 4.4489 8.5465 -7.3118 19 1 6.8178 8.9248 -6.9587 20 1 6.0172 8.1936 -9.1278 21 6 3.6686 -0.0156 -4.2805 22 6 2.4951 -0.7581 -3.6339 23 6 2.0400 -0.7213 1.2493 24 1 1.6936 -1.7548 1.2553 25 6 1.5604 0.0107 2.5223 26 6 2.7590 0.9464 2.8156 27 6 3.9374 0.2550 2.1661 28 8 5.1020 0.5052 2.3946 29 7 3.5061 -0.6767 1.2985 30 1 -0.3633 0.4163 -0.9396 31 1 -0.3633 0.6056 0.8303 32 1 -0.3634 -1.0217 0.1092 33 1 0.9023 1.5322 -3.0774 34 1 1.6452 1.7757 -1.4755 35 1 3.8658 2.0238 -2.4965 36 1 2.7385 3.1524 -3.2871 37 1 2.3993 1.5074 -5.1237 38 1 5.3021 2.2081 -4.4981 39 1 4.7122 1.6725 -6.0898 40 1 3.1552 3.6010 -6.1618 41 1 3.7450 4.1367 -4.5701 42 1 5.9639 3.8696 -6.2963 43 1 7.8970 6.1487 -7.7782 44 1 4.5398 -0.0737 -3.6279 45 1 3.9030 -0.4726 -5.2418 46 1 2.7965 -1.7771 -3.3912 47 1 1.6505 -0.7812 -4.3226 48 1 0.6552 0.5847 2.3247 49 1 1.4042 -0.6920 3.3408 50 1 2.9161 1.0391 3.8902 51 1 2.5983 1.9273 2.3684 52 1 4.0890 -1.2467 0.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318918643.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:47 Heat of formation + Delta-G solvation = -77.781218 kcal Electronic energy + Delta-G solvation = -30102.668638 eV Core-core repulsion = 26101.363673 eV Total energy + Delta-G solvation = -4001.304965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31225 -40.06818 -38.17300 -36.95206 -35.38433 -33.94602 -33.20601 -31.68475 -31.23745 -30.98424 -28.47825 -27.22360 -25.74113 -24.53216 -23.53519 -22.96114 -21.74377 -20.84716 -20.75974 -20.17167 -19.15117 -18.08062 -17.28503 -17.00188 -16.77411 -15.90754 -15.65685 -15.26997 -14.80034 -14.70389 -14.43353 -14.23202 -14.19263 -13.88756 -13.75626 -13.70377 -13.51243 -13.35030 -13.15690 -12.99841 -12.70532 -12.51287 -12.34160 -12.25317 -12.09952 -11.70544 -11.43672 -11.31561 -11.23228 -11.17634 -11.02206 -10.80992 -10.63265 -10.33501 -10.22936 -10.13362 -9.93928 -9.90628 -9.67855 -9.44562 -8.88478 -8.84681 -6.90878 -5.76128 -3.04763 2.31125 2.32539 2.67663 3.04904 3.43087 3.48084 3.50833 3.81109 4.01073 4.06660 4.25264 4.45551 4.51869 4.56476 4.63471 4.73246 4.74281 4.78021 4.83892 4.92285 5.08155 5.09615 5.15317 5.20643 5.22083 5.33365 5.35416 5.40948 5.51229 5.54204 5.56475 5.63278 5.66426 5.68957 5.79081 5.81111 5.99212 6.02300 6.14114 6.31398 6.34269 6.40663 6.43415 6.50953 6.77372 6.85819 6.90995 7.12271 7.69791 7.86232 7.98466 8.43061 9.53781 10.13145 10.47118 11.47029 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014030 B = 0.002289 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.294564 B =12228.511551 C =13073.293745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 H 0.100 0.900 4 C 0.523 3.477 5 O -0.547 6.547 6 N -0.606 5.606 7 C 0.103 3.897 8 C -0.133 4.133 9 C -0.081 4.081 10 C -0.122 4.122 11 C 0.154 3.846 12 N -0.735 5.735 13 C -0.239 4.239 14 H 0.070 0.930 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.129 4.129 22 C 0.111 3.889 23 C 0.149 3.851 24 H 0.100 0.900 25 C -0.131 4.131 26 C -0.159 4.159 27 C 0.516 3.484 28 O -0.534 6.534 29 N -0.723 5.723 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.019 0.981 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.067 0.933 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.734 -15.443 18.898 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 H 0.118 0.882 4 C 0.311 3.689 5 O -0.425 6.425 6 N -0.339 5.339 7 C -0.019 4.019 8 C -0.171 4.171 9 C -0.100 4.100 10 C -0.159 4.159 11 C 0.026 3.974 12 N -0.379 5.379 13 C -0.370 4.370 14 H 0.088 0.912 15 C -0.212 4.212 16 N -0.583 5.583 17 Si 0.738 3.262 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.167 4.167 22 C -0.011 4.011 23 C 0.042 3.958 24 H 0.118 0.882 25 C -0.168 4.168 26 C -0.199 4.199 27 C 0.302 3.698 28 O -0.410 6.410 29 N -0.378 5.378 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.036 0.964 42 H 0.216 0.784 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.095 0.905 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -18.077 -15.690 19.092 30.618 hybrid contribution 0.511 0.757 -0.871 1.262 sum -17.565 -14.933 18.221 29.386 Atomic orbital electron populations 1.21779 0.91452 1.03452 1.03320 1.21861 0.98440 1.01447 0.93340 0.88191 1.20450 0.77362 0.86871 0.84214 1.90679 1.49564 1.17085 1.85167 1.48143 1.67430 1.10160 1.08127 1.22017 0.98567 0.79462 1.01892 1.22137 0.97848 1.00310 0.96816 1.21071 0.99263 0.93778 0.95922 1.21766 0.97270 0.96733 1.00171 1.20686 0.91684 0.89945 0.95071 1.42404 1.12800 1.11284 1.71422 1.19277 0.98044 0.88167 1.31496 0.91189 1.24761 0.96099 0.98437 1.01881 1.69675 1.03537 1.36271 1.48767 0.86115 0.77192 0.84884 0.77998 1.20560 1.21848 1.21859 1.21977 0.97847 0.95750 1.01137 1.21647 0.97442 0.97075 0.84924 1.21467 0.80212 1.00953 0.93133 0.88229 1.22798 0.98473 0.98781 0.96773 1.22410 0.93775 1.00322 1.03380 1.20960 0.89905 0.79656 0.79310 1.90786 1.19718 1.65995 1.64506 1.46341 1.07930 1.39382 1.44134 0.91465 0.90654 0.91419 0.90933 0.89785 0.91439 0.89610 0.90986 0.92045 0.91882 0.96674 0.96370 0.78351 0.93557 0.91530 0.90537 0.89178 0.91458 0.88482 0.89395 0.87894 0.87655 0.74662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 8.80 37.16 0.33 -0.23 16 2 C -0.13 -0.80 1.68 -91.77 -0.15 -0.95 16 3 H 0.10 0.58 6.20 -51.93 -0.32 0.26 16 4 C 0.52 5.05 6.55 -10.99 -0.07 4.97 16 5 O -0.55 -6.91 15.19 5.55 0.08 -6.82 16 6 N -0.61 -5.62 2.97 -172.50 -0.51 -6.13 16 7 C 0.10 0.82 6.01 -3.49 -0.02 0.80 16 8 C -0.13 -1.41 5.16 -26.39 -0.14 -1.54 16 9 C -0.08 -0.95 2.15 -90.58 -0.19 -1.14 16 10 C -0.12 -1.91 4.80 -26.73 -0.13 -2.03 16 11 C 0.15 3.03 6.02 -4.04 -0.02 3.00 16 12 N -0.74 -18.95 5.60 -59.91 -0.34 -19.29 16 13 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 14 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 15 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 16 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 17 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 C -0.13 -1.37 5.36 -26.61 -0.14 -1.52 16 22 C 0.11 1.08 6.44 -3.71 -0.02 1.06 16 23 C 0.15 0.93 2.57 -67.01 -0.17 0.76 16 24 H 0.10 0.65 7.89 -51.93 -0.41 0.24 16 25 C -0.13 -0.48 6.54 -24.97 -0.16 -0.65 16 26 C -0.16 -0.94 6.86 -26.62 -0.18 -1.13 16 27 C 0.52 5.48 8.43 -10.86 -0.09 5.39 16 28 O -0.53 -8.34 18.03 5.55 0.10 -8.24 16 29 N -0.72 -6.60 5.47 -52.77 -0.29 -6.89 16 30 H 0.07 0.28 7.82 -51.93 -0.41 -0.13 16 31 H 0.07 0.14 6.40 -51.93 -0.33 -0.19 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.52 5.42 -51.93 -0.28 0.23 16 35 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.09 0.95 6.50 -51.93 -0.34 0.61 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.02 0.36 6.53 -51.93 -0.34 0.02 16 42 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 0.97 7.00 -51.93 -0.36 0.61 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 0.16 5.98 -51.93 -0.31 -0.15 16 49 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.41 4.29 8.77 -40.82 -0.36 3.93 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -36.12 402.20 -9.43 -45.55 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.81 Total: 6.91 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.43 Total: -0.70 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.41 Total: -60.31 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.18 Total: -15.06 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.12 -9.43 -45.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318918643.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.227 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds