Wall clock time and date at job start Tue Mar 31 2020 20:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47095 * 2 1 4 4 C 1.50697 * 109.46961 * 240.00043 * 2 1 3 5 5 O 1.21288 * 119.99741 * 262.25503 * 4 2 1 6 6 N 1.34767 * 120.00081 * 82.25843 * 4 2 1 7 7 C 1.46921 * 120.63363 * 4.56903 * 6 4 2 8 8 C 1.53624 * 108.54984 * 126.36692 * 7 6 4 9 9 C 1.53035 * 109.24004 * 54.85273 * 8 7 6 10 10 C 1.53000 * 109.45087 * 178.49888 * 9 8 7 11 11 C 1.52997 * 109.47491 * 295.06770 * 10 9 8 12 12 N 1.46498 * 109.47474 * 179.97438 * 11 10 9 13 13 C 1.36937 * 120.00227 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99895 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00151 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99762 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 119.99921 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47524 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46900 * 120.00449 * 17 15 13 20 20 H 1.48501 * 109.47174 * 240.00169 * 17 15 13 21 21 C 1.53042 * 109.54354 * 298.51703 * 9 8 7 22 22 C 1.46929 * 120.63263 * 184.84251 * 6 4 2 23 23 C 1.53005 * 109.46919 * 120.00047 * 2 1 3 24 24 H 1.09000 * 110.21364 * 60.69840 * 23 2 1 25 25 C 1.54480 * 110.24315 * 298.77258 * 23 2 1 26 26 C 1.54858 * 101.65962 * 266.38947 * 25 23 2 27 27 C 1.51282 * 104.20815 * 335.19636 * 26 25 23 28 28 O 1.21286 * 124.94110 * 196.24543 * 27 26 25 29 29 N 1.34418 * 110.11616 * 16.26165 * 27 26 25 30 30 H 1.09000 * 109.47026 * 66.10247 * 1 2 3 31 31 H 1.09000 * 109.46979 * 306.10424 * 1 2 3 32 32 H 1.08992 * 109.47363 * 186.10311 * 1 2 3 33 33 H 1.09003 * 109.59184 * 246.20150 * 7 6 4 34 34 H 1.09002 * 109.58766 * 6.62716 * 7 6 4 35 35 H 1.09011 * 109.63129 * 294.86866 * 8 7 6 36 36 H 1.08991 * 109.46196 * 174.74317 * 8 7 6 37 37 H 1.09002 * 109.46283 * 58.54007 * 9 8 7 38 38 H 1.09008 * 109.47028 * 55.06883 * 10 9 8 39 39 H 1.09004 * 109.47286 * 175.06211 * 10 9 8 40 40 H 1.09001 * 109.46880 * 299.99441 * 11 10 9 41 41 H 1.09004 * 109.47313 * 59.99457 * 11 10 9 42 42 H 0.97007 * 119.99716 * 359.97438 * 12 11 10 43 43 H 0.97000 * 119.99510 * 179.97438 * 16 15 13 44 44 H 1.09003 * 109.49645 * 301.41175 * 21 9 8 45 45 H 1.08996 * 109.52474 * 181.33097 * 21 9 8 46 46 H 1.09004 * 109.58682 * 353.38200 * 22 6 4 47 47 H 1.09003 * 109.58700 * 113.65488 * 22 6 4 48 48 H 1.08999 * 110.97338 * 24.53301 * 25 23 2 49 49 H 1.08997 * 110.96941 * 148.30207 * 25 23 2 50 50 H 1.08997 * 110.46958 * 216.51992 * 26 25 23 51 51 H 1.09003 * 110.60385 * 93.93827 * 26 25 23 52 52 H 0.97007 * 124.34769 * 180.42791 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3679 -1.8740 -1.1643 6 7 2.1087 -0.0527 -2.4043 7 6 1.8015 1.3820 -2.4799 8 6 2.9881 2.1019 -3.1384 9 6 3.2852 1.4510 -4.4912 10 6 4.4424 2.1882 -5.1681 11 6 4.0147 3.6210 -5.4918 12 7 5.1230 4.3271 -6.1394 13 6 4.9719 5.6328 -6.5233 14 1 4.0356 6.1421 -6.3489 15 6 6.0223 6.3020 -7.1365 16 7 7.1632 5.6812 -7.3493 17 14 5.8159 8.0829 -7.6607 18 1 4.4489 8.5465 -7.3118 19 1 6.8178 8.9248 -6.9587 20 1 6.0172 8.1936 -9.1278 21 6 3.6686 -0.0156 -4.2805 22 6 2.4951 -0.7581 -3.6339 23 6 2.0400 -0.7213 1.2493 24 1 1.6936 -1.7548 1.2553 25 6 1.5604 0.0107 2.5223 26 6 2.7590 0.9464 2.8156 27 6 3.9374 0.2550 2.1661 28 8 5.1020 0.5052 2.3946 29 7 3.5061 -0.6767 1.2985 30 1 -0.3633 0.4163 -0.9396 31 1 -0.3633 0.6056 0.8303 32 1 -0.3634 -1.0217 0.1092 33 1 0.9023 1.5322 -3.0774 34 1 1.6452 1.7757 -1.4755 35 1 3.8658 2.0238 -2.4965 36 1 2.7385 3.1524 -3.2871 37 1 2.3993 1.5074 -5.1237 38 1 5.3021 2.2081 -4.4981 39 1 4.7122 1.6725 -6.0898 40 1 3.1552 3.6010 -6.1618 41 1 3.7450 4.1367 -4.5701 42 1 5.9639 3.8696 -6.2963 43 1 7.8970 6.1487 -7.7782 44 1 4.5398 -0.0737 -3.6279 45 1 3.9030 -0.4726 -5.2418 46 1 2.7965 -1.7771 -3.3912 47 1 1.6505 -0.7812 -4.3226 48 1 0.6552 0.5847 2.3247 49 1 1.4042 -0.6920 3.3408 50 1 2.9161 1.0391 3.8902 51 1 2.5983 1.9273 2.3684 52 1 4.0890 -1.2467 0.7727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318918643.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:46 Heat of formation + Delta-G solvation = -103.592383 kcal Electronic energy + Delta-G solvation = -30103.787894 eV Core-core repulsion = 26101.363673 eV Total energy + Delta-G solvation = -4002.424221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.97767 -40.84520 -39.11138 -37.77472 -36.87946 -35.16002 -34.12124 -32.89675 -32.21723 -31.83841 -29.91381 -27.72995 -26.84006 -25.59939 -24.38136 -24.31113 -22.74579 -21.86144 -21.47676 -21.05755 -19.86388 -19.15698 -18.75257 -17.98858 -17.44649 -16.71910 -16.58568 -16.34593 -16.12250 -15.75968 -15.51658 -15.36678 -15.17227 -14.92992 -14.87321 -14.57493 -14.39328 -14.14739 -14.05113 -13.89460 -13.71295 -13.22516 -13.08868 -12.95517 -12.86805 -12.72385 -12.56369 -12.49438 -12.32706 -12.19865 -12.13435 -12.06894 -11.96819 -11.72546 -11.64888 -11.38180 -11.21854 -10.96368 -10.91233 -10.63892 -10.17488 -9.65127 -9.01083 -7.96917 -5.26309 1.46384 1.47851 1.53928 1.57980 1.59919 1.99721 2.38223 2.55096 3.27123 3.37195 3.50850 3.63158 3.66693 3.70313 3.74778 3.90438 4.09015 4.10445 4.14228 4.20616 4.28735 4.33516 4.38997 4.42821 4.51797 4.56935 4.60761 4.74292 4.76572 4.81156 4.84248 4.87789 4.90938 4.93551 4.98228 5.02953 5.06385 5.13698 5.19520 5.21532 5.26947 5.37681 5.41625 5.48088 5.52401 5.57445 5.78971 6.04451 6.25890 6.41164 7.13849 7.18271 7.31029 8.08543 8.30143 9.27393 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014030 B = 0.002289 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.294564 B =12228.511551 C =13073.293745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 H 0.109 0.891 4 C 0.514 3.486 5 O -0.584 6.584 6 N -0.609 5.609 7 C 0.108 3.892 8 C -0.132 4.132 9 C -0.072 4.072 10 C -0.110 4.110 11 C 0.153 3.847 12 N -0.753 5.753 13 C -0.244 4.244 14 H 0.079 0.921 15 C -0.081 4.081 16 N -0.974 5.974 17 Si 0.976 3.024 18 H -0.262 1.262 19 H -0.294 1.294 20 H -0.293 1.293 21 C -0.122 4.122 22 C 0.114 3.886 23 C 0.143 3.857 24 H 0.096 0.904 25 C -0.115 4.115 26 C -0.151 4.151 27 C 0.502 3.498 28 O -0.598 6.598 29 N -0.725 5.725 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.027 0.973 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.131 0.869 49 H 0.101 0.899 50 H 0.113 0.887 51 H 0.122 0.878 52 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.633 -14.491 20.022 33.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 H 0.127 0.873 4 C 0.304 3.696 5 O -0.465 6.465 6 N -0.341 5.341 7 C -0.014 4.014 8 C -0.170 4.170 9 C -0.091 4.091 10 C -0.148 4.148 11 C 0.027 3.973 12 N -0.395 5.395 13 C -0.375 4.375 14 H 0.097 0.903 15 C -0.273 4.273 16 N -0.625 5.625 17 Si 0.805 3.195 18 H -0.186 1.186 19 H -0.221 1.221 20 H -0.220 1.220 21 C -0.161 4.161 22 C -0.008 4.008 23 C 0.038 3.962 24 H 0.114 0.886 25 C -0.152 4.152 26 C -0.191 4.191 27 C 0.291 3.709 28 O -0.480 6.480 29 N -0.376 5.376 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.045 0.955 42 H 0.202 0.798 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.149 0.851 49 H 0.119 0.881 50 H 0.131 0.869 51 H 0.140 0.860 52 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -22.079 -14.745 20.227 33.377 hybrid contribution 1.723 0.361 -1.247 2.157 sum -20.357 -14.384 18.979 31.329 Atomic orbital electron populations 1.21829 0.88970 1.03996 1.04814 1.21912 1.00246 1.01054 0.91180 0.87322 1.21169 0.76632 0.86662 0.85127 1.90665 1.51156 1.18893 1.85744 1.48260 1.67094 1.10750 1.07956 1.22118 0.97743 0.78128 1.03430 1.22090 0.98476 1.00511 0.95904 1.20998 0.97873 0.93734 0.96511 1.21648 0.98382 0.94914 0.99880 1.20881 0.90110 0.91555 0.94770 1.42706 1.13829 1.11060 1.71895 1.19722 0.98164 0.89293 1.30366 0.90295 1.25655 0.95973 1.02900 1.02791 1.69842 1.04394 1.38001 1.50242 0.85026 0.77788 0.79599 0.77082 1.18585 1.22112 1.22006 1.21887 0.97699 0.95352 1.01127 1.21569 0.97482 0.96210 0.85570 1.21727 0.78271 1.01472 0.94763 0.88559 1.22879 0.98441 0.98419 0.95454 1.22470 0.92175 1.00901 1.03563 1.21890 0.90286 0.79635 0.79135 1.90739 1.22600 1.68018 1.66599 1.46584 1.09432 1.38464 1.43168 0.91188 0.87586 0.91770 0.88754 0.87432 0.93372 0.89780 0.89519 0.93670 0.92630 0.96004 0.95506 0.79820 0.94035 0.93532 0.90057 0.90581 0.89577 0.85139 0.88066 0.86899 0.86034 0.76097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.50 8.80 71.98 0.63 0.14 16 2 C -0.12 -1.18 1.68 -11.54 -0.02 -1.20 16 3 H 0.11 0.88 6.20 -2.39 -0.01 0.87 16 4 C 0.51 9.28 6.55 87.66 0.57 9.85 16 5 O -0.58 -14.77 15.19 -3.05 -0.05 -14.82 16 6 N -0.61 -10.27 2.97 -818.07 -2.43 -12.69 16 7 C 0.11 1.38 6.01 86.51 0.52 1.90 16 8 C -0.13 -2.59 5.16 30.82 0.16 -2.43 16 9 C -0.07 -1.61 2.15 -10.77 -0.02 -1.63 16 10 C -0.11 -3.48 4.80 30.59 0.15 -3.33 16 11 C 0.15 5.94 6.02 86.38 0.52 6.46 16 12 N -0.75 -39.18 5.60 -343.45 -1.92 -41.10 16 13 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 14 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 15 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 16 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 17 Si 0.98 46.42 29.55 68.60 2.03 48.44 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 21 C -0.12 -2.57 5.36 30.67 0.16 -2.41 16 22 C 0.11 2.10 6.44 86.36 0.56 2.66 16 23 C 0.14 1.50 2.57 45.45 0.12 1.62 16 24 H 0.10 1.11 7.89 -2.39 -0.02 1.10 16 25 C -0.11 -0.41 6.54 31.73 0.21 -0.20 16 26 C -0.15 -1.42 6.86 30.67 0.21 -1.21 16 27 C 0.50 10.72 8.43 87.90 0.74 11.46 16 28 O -0.60 -19.75 18.03 -3.05 -0.05 -19.80 16 29 N -0.72 -13.29 5.47 -439.44 -2.40 -15.70 16 30 H 0.07 0.27 7.82 -2.39 -0.02 0.25 16 31 H 0.11 -0.24 6.40 -2.39 -0.02 -0.25 16 32 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.90 5.42 -2.39 -0.01 0.89 16 35 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 1.70 6.50 -2.39 -0.02 1.68 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.03 1.02 6.53 -2.38 -0.02 1.00 16 42 H 0.37 20.78 7.67 -92.70 -0.71 20.07 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.65 7.00 -2.38 -0.02 1.63 16 47 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.13 -0.34 5.98 -2.39 -0.01 -0.36 16 49 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 50 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.40 8.93 8.77 -92.70 -0.81 8.12 16 Total: -1.00 -82.37 402.20 0.68 -81.70 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.59 Total: 30.30 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.81 Total: 4.45 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -6.47 Total: -130.27 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.10 Total: -34.62 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -82.37 0.68 -81.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318918643.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.896 kcal (2) G-P(sol) polarization free energy of solvation -82.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds